ISPfr3
- Family ISL3
- Group
Isoform Synonym(s) ISMlu6
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1457 bp
Ends
IR Length : 18/24
IRL : GGCTCTTCCCAGATGAGGGTGTAGCGCACGTCGCGCGGCGGGCCGGCGCG
IRR : GGCTCATCCGAATCCAGGGTGTAGTCGGGGTCTGAACCCGCCGGTCTCGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATGTCAGAGCGTCCAAACA | CGAAAAGGCGATCAAACGCG | 0 | |
| CGGACTCCGGTAGGTTCGGA | CCTGAAGGGTTTGATCCAGA | 0 |
DNA sequence
GGCTCTTCCCAGATGAGGGTGTAGCGCACGTCGCGCGGCGGGCCGGCGCGTCGGTGGCCGGATAGAGGTCGAGGTCTCCCGAGGATGAGAGCTCCTACAC
ACTCAGCCCGAAAGACCTCGACGTGCACGACGCTACCGTCGGCGGGCGCGCTGATGCGTTCGCCAGCCCCGACCTGACTGCCTTCTGCCGCCTCGACGAA
CTCGGCCTCGTTGTCACCGGGCAGCGACTCGAGCCGGATCGTGCCGTATTGGCCTGCCAGGTGGTCGAGCCCGACCAGTGGTGCCGGCGCTGCGGCTGCG
AAGGGAGACCACGTGACACCGTGGTCCGACGGCTTGCCCACGAACCACTGGGCTGGCGGCCCACGACGCTGGAGGTCGTCGTGCGCCGTTACCGCTGCAG
CGGCTGCGGGTATGTGTGGCGCCAGGACACCACCGCCGCGGCCGAGCCCCGGGCCAAGTTGTCTCGGCGCGCTCTGCGGTGGGCGCTGGAAGGGATCGTG
GTCCAGCACCTGAGCGTGGCTCGGGTCGCCGAGGGGCTCGCGGTGGCCTGGGACACCGCCAACGACGCCGTTCTGGCCGAGGGCAAGCGGGTGCTGATCG
ACGAGGAGCACCGCTTCGAGGGGGTGAAGGTCGTCGGGGTCGATGAGCACGTGTGGAGGCACACCCGTCGCGGCGACAGGTACGTCACCGTGATCATCGA
CCTCACCCCAGTGCGAGATGGCACCGGCCCGGCACGGCTGCTGGACATGGTCGAAGGACGCTCCAAGCAGGCGTTCAAGACCTGGCTGGCCGACCGCCCG
CAGGAGTGGCGCGACGGCGTGGAGGTGGTCGCGATGGACGGCTTCACCGGGTTCAAGACCGCCGCCGTCGAGGAACTGCCCGACGTGGTGACCGTGCTAG
ATCCCTTCCACGTCACGCGCCTCGCTGGCGAGGCGCTCGATGAGTGCCGACGGCGAGTTCAGCAGGCCATCTGTGGGCACCGCGGCCGCAAGGGCGACCC
GCTCTATGCCGCCCGCCGGACCCTGTCCACCGGCGCCGACCTGCTCAACGACAAGCAGAAGGACCGACTGGACACCCTGTTCGCCGACGACGCCCACGTC
GAGGTCGAGGTCACCTGGAGCGTCTACCAGCGCATGATCGCCGCCTACCGCCACGAGAACCGGCGCCACGGCCGCGAGCTGATGGCCCGGCTCATCGACT
CGATCAGCACCGGCGTCCCCAAGGCCCTGGTCGAGATCACCAAGCTCGGCAGGACGCTGAAGAAGCGCGCCGCCGACGTCCTGGCCTACTTCGACCGGCC
CAGCACCTCCAACGGGCCCACCGAGGCGATCAACGGCAGGCTCGAGCACCTGCGCGGCTCGGCGCTGGGGTTCCGCAACCTGACCAACTACATCGCCAGA
TCCCTGCTCGAGACCGGCGGGTTCAGACCCCGACTACACCCTGGATTCGGATGAGCC
ACTCAGCCCGAAAGACCTCGACGTGCACGACGCTACCGTCGGCGGGCGCGCTGATGCGTTCGCCAGCCCCGACCTGACTGCCTTCTGCCGCCTCGACGAA
CTCGGCCTCGTTGTCACCGGGCAGCGACTCGAGCCGGATCGTGCCGTATTGGCCTGCCAGGTGGTCGAGCCCGACCAGTGGTGCCGGCGCTGCGGCTGCG
AAGGGAGACCACGTGACACCGTGGTCCGACGGCTTGCCCACGAACCACTGGGCTGGCGGCCCACGACGCTGGAGGTCGTCGTGCGCCGTTACCGCTGCAG
CGGCTGCGGGTATGTGTGGCGCCAGGACACCACCGCCGCGGCCGAGCCCCGGGCCAAGTTGTCTCGGCGCGCTCTGCGGTGGGCGCTGGAAGGGATCGTG
GTCCAGCACCTGAGCGTGGCTCGGGTCGCCGAGGGGCTCGCGGTGGCCTGGGACACCGCCAACGACGCCGTTCTGGCCGAGGGCAAGCGGGTGCTGATCG
ACGAGGAGCACCGCTTCGAGGGGGTGAAGGTCGTCGGGGTCGATGAGCACGTGTGGAGGCACACCCGTCGCGGCGACAGGTACGTCACCGTGATCATCGA
CCTCACCCCAGTGCGAGATGGCACCGGCCCGGCACGGCTGCTGGACATGGTCGAAGGACGCTCCAAGCAGGCGTTCAAGACCTGGCTGGCCGACCGCCCG
CAGGAGTGGCGCGACGGCGTGGAGGTGGTCGCGATGGACGGCTTCACCGGGTTCAAGACCGCCGCCGTCGAGGAACTGCCCGACGTGGTGACCGTGCTAG
ATCCCTTCCACGTCACGCGCCTCGCTGGCGAGGCGCTCGATGAGTGCCGACGGCGAGTTCAGCAGGCCATCTGTGGGCACCGCGGCCGCAAGGGCGACCC
GCTCTATGCCGCCCGCCGGACCCTGTCCACCGGCGCCGACCTGCTCAACGACAAGCAGAAGGACCGACTGGACACCCTGTTCGCCGACGACGCCCACGTC
GAGGTCGAGGTCACCTGGAGCGTCTACCAGCGCATGATCGCCGCCTACCGCCACGAGAACCGGCGCCACGGCCGCGAGCTGATGGCCCGGCTCATCGACT
CGATCAGCACCGGCGTCCCCAAGGCCCTGGTCGAGATCACCAAGCTCGGCAGGACGCTGAAGAAGCGCGCCGCCGACGTCCTGGCCTACTTCGACCGGCC
CAGCACCTCCAACGGGCCCACCGAGGCGATCAACGGCAGGCTCGAGCACCTGCGCGGCTCGGCGCTGGGGTTCCGCAACCTGACCAACTACATCGCCAGA
TCCCTGCTCGAGACCGGCGGGTTCAGACCCCGACTACACCCTGGATTCGGATGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1332 bp | 443 aa | 123 | 1454 | + | No |
Chemistry : Unknow
ORF sequence :
VHDATVGGRADAFASPDLTAFCRLDELGLVVTGQRLEPDRAVLACQVVEPDQWCRRCGCEGRPRDTVVRRLAHEPLGWRPTTLEVVVRRYRCSGCGYVWR
QDTTAAAEPRAKLSRRALRWALEGIVVQHLSVARVAEGLAVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHVWRHTRRGDRYVTVIIDLTPVRDG
TGPARLLDMVEGRSKQAFKTWLADRPQEWRDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGRKGDPLYAARRT
LSTGADLLNDKQKDRLDTLFADDAHVEVEVTWSVYQRMIAAYRHENRRHGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPT
EAINGRLEHLRGSALGFRNLTNYIARSLLETGGFRPRLHPGFG
QDTTAAAEPRAKLSRRALRWALEGIVVQHLSVARVAEGLAVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHVWRHTRRGDRYVTVIIDLTPVRDG
TGPARLLDMVEGRSKQAFKTWLADRPQEWRDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGRKGDPLYAARRT
LSTGADLLNDKQKDRLDTLFADDAHVEVEVTWSVYQRMIAAYRHENRRHGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPT
EAINGRLEHLRGSALGFRNLTNYIARSLLETGGFRPRLHPGFG
Blast result :
Comments
ISPfr3 is 88 aa similar to ISPfr2.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.