ISMch7

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011758 ND Methylobacterium chloromethanicum
Methylobacterium chloromethanicum CM4 plasmid pMCHL01
DNA section
IS Length : 1412 bp

Ends


IR Length : 18

IRL : CCTAGCATTACAGTTGCAGGGTAAGACTCCTATTTGAGGGTTTTCGGATG
IRR : CCTAGCATTACAGTTGCATTCGCGCTTTGAGATGGGCCTGTCGAGCGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
CTACAGCCCAGCCTGTCGTC0

DNA sequence

CCTAGCATTACAGTTGCAGGGTAAGACTCCTATTTGAGGGTTTTCGGATGGGAGAGTGCGATGCCCTCAGCCTCGCTCGAGTCCACGCTTGAACTCTGGT
CGACGACCCTGCGGCAGACCAAGCAGCGCATCCGCCCGCTGTTTGCCGCCCCGAGTGTCGCCGCCTCGGCCAACGCCTTCCTGGACGGACTGCTCGGCGG
TGAGCGGCGCAAGACCGGCTGGATGCGCGCCGAAGCTGCCGGTGACCCGGGTCCCTGGCGTCAGCAGGCCATCCTCGGTCGCACACACTGGGATGCAGAG
GCGCTGCGCGACGTGGTGCGCGACGACGTCGTCGAGACGCTCGCTTCACCGGATGCGGTTCTCGTGATCGACGAGACTGGCTTTCTCAAACAGGGCAAAG
CCTCGTGCGGGGTGGGCCGGCAGTACACGGGCTCGGCCGGCAAGATCACCAACTGCCAGATCGGAGTGTTTGCCTCCTACGTCTCGGATCAGGGCCATGC
CTTCATCGATCGCCGGCTGTACCTACCCAAGGCTTGGACTGAGGATCCAGCCCGGCTGCGAGCCGCGCATGTGCCCGAGGCTGTCGCGTTCGCCACCAAG
CCGAGATTGGCGCTCGCTATGATCGAGCGGGCCGTCCGGGCAGAGGTGCCGTTCGCGTGGGTAGCGGCCGACAGCATCTACGGCGTGGGCGAGATCGAAC
TGGCGCTGCGGCGGGCCTACAAGGGCTACGTGCTCGGCGTCACCGGTCAGCATCGGTTCTGGTCCTGGGACGCAAATCTCGACCTTGCGGGCACCGCCGA
GAACATCGCCAAGGGTATCTCCGACCAAGACTGGCTGCGCCTCTCGGCCGGAGCGGGCACCAAGGGAGCGCGGCTGTTCGACTGGGCCTATCTACCGCTG
GCCACACTCCGGGCTGACGCGCTCGACGCCGCGCTCGATCAGAGCTTGTGGACGCGCGGCCTGCTGGTGCGGCGCAGCCTGTCGGATGGGGCGCTGGCGT
ACTTCACGACTTGGTGCCCGGCCGGTACCCCGGTCGAGAAGCTGGTGATGGTAGAGGGCCGCCGCTGGGCGATCGAGGACGCGTTCGAGACCGCCAAGAC
GGAACTCGGGCTGGCCCACAACGAGAGCCGTTCGTGGCACGGCTGGCACCGGCACGTCAGCCTGGTGATGCTGGCCTTCGCGATGCTGGCGCGGGTGCGC
CGGCTGGCCAACGGGCCGCCCCCAAAAACGACGCTCATCGCCAAGCTCGCAGGTGCCGTGGTCCATTCAGGAGATCCGGCGCGTGGCGATGCGGCTGGCG
CAACGGCGCATTGAACCCGCCTTCGTGCTCGCATGGTCAGCTTGGCGACGCGCCCACCAAGCTACCGCTCGACAGGCCCATCTCAAAGCGCGAATGCAAC
TGTAATGCTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa611314+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPSASLESTLELWSTTLRQTKQRIRPLFAAPSVAASANAFLDGLLGGERRKTGWMRAEAAGDPGPWRQQAILGRTHWDAEALRDVVRDDVVETLASPDAV
LVIDETGFLKQGKASCGVGRQYTGSAGKITNCQIGVFASYVSDQGHAFIDRRLYLPKAWTEDPARLRAAHVPEAVAFATKPRLALAMIERAVRAEVPFAW
VAADSIYGVGEIELALRRAYKGYVLGVTGQHRFWSWDANLDLAGTAENIAKGISDQDWLRLSAGAGTKGARLFDWAYLPLATLRADALDAALDQSLWTRG
LLVRRSLSDGALAYFTTWCPAGTPVEKLVMVEGRRWAIEDAFETAKTELGLAHNESRSWHGWHRHVSLVMLAFAMLARVRRLANGPPPKTTLIAKLAGAV
VHSGDPARGDAAGATAH

 

Blast result :
Comments
ISMch7 is 80% aa similar to ISRm31.
References
1] Ming-Chun Lee and David Robinson, direct submission.