ISMch4

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011757 ND Methylobacterium chloromethanicum
Methylobacterium chloromethanicum CM4
DNA section
IS Length : 1631 bp

Ends


IR Length : 14

IRL : gtagttGCCGTGTTGCCCGCCAGCTCCCGTAATCGAGACGAGGAGACAGG
IRR : ---cccGCCGTGTTGCCGGCGACTTCCTCCGGGCCCTTGCTGCCGCTGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCGGATCCTTGCCTTCTC0

DNA sequence

GTAGTTGCCGTGTTGCCCGCCAGCTCCCGTAATCGAGACGAGGAGACAGGCTCATGCGGGTTGTGGGATTGGACATCCACCGCGTTTTCGCCGAGGCGGT
GATGCTGTAGAACGGCGCGGTCCGGCGTCTTGGTCGGATCGGCATGACGCGCGATCACCTGACGGCGTTCGCCAAGACGCTGACGCACGACGACCATGTC
GTGGTCGAGGCGACCGGCAACGCCAGCGCGGTCGCGGAGGTGATCCGGCCGCATGTCGGCCGGGTGGTGATCGCCAACCCGCGCCAGGTGCGGCTGATCG
CCGAGGCGCGGATCAAGACCGACGTCATCGACGCGACCGTGCTGGCGCGGCTCTATGCCAGTGGCTTTCTGCCGGAGGTCTGGATCCCGGACGAGGCAAC
GCTTGCGCTCCGGCGCCAGGTCACACGCCGCACCCAGATCGTCCGGCAGCGGACGCGGCTGAAGACGATGGTGCAGTCGATCCTGCATGCGCATCTCGTG
CCGCCCTGTCCCCACGCAGATCTGTTCGGGCCGCGGGGACGGACCTGGCTGCTGGCACAGCCGCTGCCCGGCGACGAGAGCGATGCCGTCGCCCGGCACC
TGCGTGAGTACGACCGGCTGAGTGAGGACTTGAAGGTCGTCGAGCGTGAACTGGCGCGCGAGGCCCGCGCCGACGCGAACGTCACGCGGCTGATGACGAT
CCCAGGCATCGACCTGGTGGTCGCCGTCGGGCTGATCGCCGCCATCGGACCCGTGGCGCGGTTCGCCGGCCCGGATCGGCTTGTGGCCTATCTTGGGCTG
AACCCGAGCGTGCATCAGTCCGGATCCGGCAAGCCACGGCATGGACGCATCACCAAGCAGGGGCGCAGCCACGCCCCCACGATGTTGGTCGAGGCGGCTT
GGCAGGCGGCGCGGGGGCCCGGTCCACTGCGCGCCTTCTTCCAGCGCGTGTCGGCGCGACGTGGGCCTCACGTCGCGGCCGTGGCGGTCGCACGCAAGCT
GGCGGTGATCATCTGGCACCTGCTCACACGGGGTGAGGACTACGCCTGGGTGCGTCCTGCGCTCCACGCCAAGAAGCTGCGGGAACTGGAGCTGCGCTCG
GGCGAGCCGGCACGGCGTGGTCAGCGCGGAACGGCCTACGCCTACAACCTGACCCGCGTCCGACAGGAGGAGCGGCGGCGTGTCGAGCAGGCGGAGGTCG
CCTACCGACACCTGACCGAGGGCTGGAGCCGGCGTGGGCGACGCGTACCCACGGGCGCCGCAAAGGAGGAGCGACTATGAAGACGGCGCGGCCGGGCTTG
CGCCTCGAACCCGGCTCTTCGTCACGCGGTCGCCCGTGAGCGGCAACAAAATAGCACGGATCGCAACAAGGGGACTGTTCAACCTCATCCGTCGTCCAAG
GGTGACGCGGCTTGGTGAGGCGATGCTCGATGTCGAGGTCGGCGCAGGCGCCCTCGAAGGAGTGGCACCGAAAGAGAATCTTATCGGCGCGCATCTGCTT
GATCTCGGCCGGCGTCCAAGTCTCGCCGGAGGGATCGGTGAAGTGCGTGCCGTTATCGGTCAGCACGGTGAGGATCTTGTAGGGAACAGCGGCAGCAAGG
GCCCGGAGGAAGTCGCCGGCAACACGGCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa1441280+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTRDHLTAFAKTLTHDDHVVVEATGNASAVAEVIRPHVGRVVIANPRQVRLIAEARIKTDVIDATVLARLYASGFLPEVWIPDEATLALRRQVTRRTQIV
RQRTRLKTMVQSILHAHLVPPCPHADLFGPRGRTWLLAQPLPGDESDAVARHLREYDRLSEDLKVVERELAREARADANVTRLMTIPGIDLVVAVGLIAA
IGPVARFAGPDRLVAYLGLNPSVHQSGSGKPRHGRITKQGRSHAPTMLVEAAWQAARGPGPLRAFFQRVSARRGPHVAAVAVARKLAVIIWHLLTRGEDY
AWVRPALHAKKLRELELRSGEPARRGQRGTAYAYNLTRVRQEERRRVEQAEVAYRHLTEGWSRRGRRVPTGAAKEERL

 

Blast result :
Comments
ISMch4 is 65% aa similar to ISAtu7.
References
1] Ming-Chun Lee and David Robinson, direct submission.