ISTko2

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006624 ND Thermococcus kodakarensis
Thermococcus kodakarensis KOD1
DNA section
IS Length : 1855 bp

Ends


IR Length : 0

IRL : GGGCTGTTTCATAAATAGTTAATAGCGTAAAGTTTAAATGTTTTTGAGTC
IRR : CCGTTCTGGTCAGCCGTAATTTGTGTAAAGTTCGTAAACATCGCTACGGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTACTATTGAAACGGTATT0

DNA sequence

GGGCTGTTTCATAAATAGTTAATAGCGTAAAGTTTAAATGTTTTTGAGTCATATTTTGTTTTGGTGGAGGTCACTATGAAGCTTTATCGGACGGGAAAAG
CCTCAGAACTCTTGGGAATCAGCAAGCCTACACTTCTCAGAAAAATCAAAACAGGCGAAATAAAAGCCTACAAAATAGGCAAAGAATACCGCATTCCAGA
AAGCGAAATAAAGAGACTTCTTGAGGGCAAAGTTCCCGATAAAGTTGTCATTTACGCCAGAGTCTCAAGCAGAGACCAGAAAGAAGACCTTGAACGACAA
GTCGAATACCTCAAAAACTACTGCTCCGCAAAAGGATACCAAGTTGCTAGAATCCTCACTGACATTTCATCAGGCCTAAACGAAAACCGGAAGGGTTTAA
AACAGCTCTTCAAACTCGTGGAAAGCGGAGAGGTAACCAAAGTCGTGATAACCTACAAGGACAGGCTCACCCGCTTTGGCTTCAAATACCTCGAACAATA
CTTCAACTCTCACGGTGTCGAGATTGAAGTAATCTTCAATGATGAAGAGAAAACGCCAGAGAAAGAATTAGTTGAAGACTTGTTAGCTATCGTTACCTCT
TTCGCTGGAAAGCTTTACGGAGCTCGTTCTCACAAGAAAAAACGCCTCGTCGAGGCGGTAAAGAATGCCCTCAGAGACGATTAAGCTCACGGCAAAATTC
AAGCTCAAAAACCCACCAGAGGAGTTAAACGACCTCTTCTCCACTTATCGGGAGATTGTGAACCACCTCATCAGCTATGCTTTCGAGAACAATGTTACGA
GCTTTTACAGGCTCAAAAAGGAAACATACAAAAGCCTCCGCAAGGAGTATCCAGAACTACCAAGCCATTACCACTACACAGCAACTCAAATGGCCACAAT
GATTTACAAGAGTTATCGGAAGCGGAAAAAGAAGGGTAAGGCTAATGGTAGGCCAGTTTTTAAGAAGGATGCCATAATGCTCGACGACCATCTCTTCAAG
CTCGACCTTGAGGCTGGAGTGATAAAACTCTCCACTCCGAGCGGGAGGGTTGAGCTGGAGTTTTATCCATCCAAGTATCACGAGAAGTTTAGGGACTGGA
AAATCGGCCAAGCGTGGTTGGTGAGGACTCCAAAAGGCGTTTTCATCAACGTGGTCTTTTCCAGAGAGGTTGAAGTGAGAGAACCTGAAGCCTTTGTCGG
CGTGGATTTGAACGAGAACAACGTTACGCTCAGCCTTCCAAACGGTGAGTTCGTCCAGATACTCACTCACGAGCGGGAGATAAGGACTGGCTACTTCCTA
AAACGGAGGAAGATTCAGAAAAAGCTTAGGACTAGAAAGAAAAGGAAAGAGCTTCTCGAAAAGTATGGGCAAAGGGAGAGGAACAGGCTGGACGACCTTT
ACCACAAATTAGCCAATAAAATCGTTGAGCTGGCGGAGAGATACAGTGGTATTGCTCTGGAGGATTTGACCGAAATCAGGGATTCGATTAGGTATTCGGC
TGAGGTGAACGGTAGGCTTCATCGTTGGAGTTTTAGGAAGCTTCAAAACATAATCGAATACAAGGCCAAGCTGAAGGGGATAAAGGTTGTTTTTGTTAAT
CCTGCTTACACTTCGTCCCTGTGTCCGGTATGTGGGAGAAAGTTAAGCCCGAATGGGCACAGGGTCTTGAAGTGTCCTAAGTGTGGTTTTGAGGCCGATA
GGGACGTTATTGGCTCTTGGAATATCTCCCTTCGTGCCCTGAAGATGTGGGGAGTTTCCGTTCCCCCCGAAAGCCCCACGATGAAGACGGGAGTGGGGAA
GGTCGGCCGTAGCGATGTTTACGAACTTTACACAAATTACGGCTGACCAGAACGG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
609 bp202 aa76684+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MKLYRTGKASELLGISKPTLLRKIKTGEIKAYKIGKEYRIPESEIKRLLEGKVPDKVVIYARVSSRDQKEDLERQVEYLKNYCSAKGYQVARILTDISSG
LNENRKGLKQLFKLVESGEVTKVVITYKDRLTRFGFKYLEQYFNSHGVEIEVIFNDEEKTPEKELVEDLLAIVTSFAGKLYGARSHKKKRLVEAVKNALR
DD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1182 bp393 aa6651846+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MPSETIKLTAKFKLKNPPEELNDLFSTYREIVNHLISYAFENNVTSFYRLKKETYKSLRKEYPELPSHYHYTATQMATMIYKSYRKRKKKGKANGRPVFK
KDAIMLDDHLFKLDLEAGVIKLSTPSGRVELEFYPSKYHEKFRDWKIGQAWLVRTPKGVFINVVFSREVEVREPEAFVGVDLNENNVTLSLPNGEFVQIL
THEREIRTGYFLKRRKIQKKLRTRKKRKELLEKYGQRERNRLDDLYHKLANKIVELAERYSGIALEDLTEIRDSIRYSAEVNGRLHRWSFRKLQNIIEYK
AKLKGIKVVFVNPAYTSSLCPVCGRKLSPNGHRVLKCPKCGFEADRDVIGSWNISLRALKMWGVSVPPESPTMKTGVGKVGRSDVYELYTNYG

 

Blast result :
Comments
ISTko2 is 97% (ORFA : the resolvase) and 93% (ORFB) aa similar to ISTsi1.
References
1] Isfinder annotation (2009)
2] Fukui,T., Atomi,H., Kanai,T., Matsumi,R., Fujiwara,S. and Imanaka,T. (2005) Genome Res. 15 (3), 352-363