ISTko2
- Family IS607
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006624 | ND | Thermococcus kodakarensis | Thermococcus kodakarensis KOD1 |
DNA section
IS Length : 1855 bp
Ends
IR Length : 0
IRL : GGGCTGTTTCATAAATAGTTAATAGCGTAAAGTTTAAATGTTTTTGAGTC
IRR : CCGTTCTGGTCAGCCGTAATTTGTGTAAAGTTCGTAAACATCGCTACGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTACTATTG | AAACGGTATT | 0 |
DNA sequence
GGGCTGTTTCATAAATAGTTAATAGCGTAAAGTTTAAATGTTTTTGAGTCATATTTTGTTTTGGTGGAGGTCACTATGAAGCTTTATCGGACGGGAAAAG
CCTCAGAACTCTTGGGAATCAGCAAGCCTACACTTCTCAGAAAAATCAAAACAGGCGAAATAAAAGCCTACAAAATAGGCAAAGAATACCGCATTCCAGA
AAGCGAAATAAAGAGACTTCTTGAGGGCAAAGTTCCCGATAAAGTTGTCATTTACGCCAGAGTCTCAAGCAGAGACCAGAAAGAAGACCTTGAACGACAA
GTCGAATACCTCAAAAACTACTGCTCCGCAAAAGGATACCAAGTTGCTAGAATCCTCACTGACATTTCATCAGGCCTAAACGAAAACCGGAAGGGTTTAA
AACAGCTCTTCAAACTCGTGGAAAGCGGAGAGGTAACCAAAGTCGTGATAACCTACAAGGACAGGCTCACCCGCTTTGGCTTCAAATACCTCGAACAATA
CTTCAACTCTCACGGTGTCGAGATTGAAGTAATCTTCAATGATGAAGAGAAAACGCCAGAGAAAGAATTAGTTGAAGACTTGTTAGCTATCGTTACCTCT
TTCGCTGGAAAGCTTTACGGAGCTCGTTCTCACAAGAAAAAACGCCTCGTCGAGGCGGTAAAGAATGCCCTCAGAGACGATTAAGCTCACGGCAAAATTC
AAGCTCAAAAACCCACCAGAGGAGTTAAACGACCTCTTCTCCACTTATCGGGAGATTGTGAACCACCTCATCAGCTATGCTTTCGAGAACAATGTTACGA
GCTTTTACAGGCTCAAAAAGGAAACATACAAAAGCCTCCGCAAGGAGTATCCAGAACTACCAAGCCATTACCACTACACAGCAACTCAAATGGCCACAAT
GATTTACAAGAGTTATCGGAAGCGGAAAAAGAAGGGTAAGGCTAATGGTAGGCCAGTTTTTAAGAAGGATGCCATAATGCTCGACGACCATCTCTTCAAG
CTCGACCTTGAGGCTGGAGTGATAAAACTCTCCACTCCGAGCGGGAGGGTTGAGCTGGAGTTTTATCCATCCAAGTATCACGAGAAGTTTAGGGACTGGA
AAATCGGCCAAGCGTGGTTGGTGAGGACTCCAAAAGGCGTTTTCATCAACGTGGTCTTTTCCAGAGAGGTTGAAGTGAGAGAACCTGAAGCCTTTGTCGG
CGTGGATTTGAACGAGAACAACGTTACGCTCAGCCTTCCAAACGGTGAGTTCGTCCAGATACTCACTCACGAGCGGGAGATAAGGACTGGCTACTTCCTA
AAACGGAGGAAGATTCAGAAAAAGCTTAGGACTAGAAAGAAAAGGAAAGAGCTTCTCGAAAAGTATGGGCAAAGGGAGAGGAACAGGCTGGACGACCTTT
ACCACAAATTAGCCAATAAAATCGTTGAGCTGGCGGAGAGATACAGTGGTATTGCTCTGGAGGATTTGACCGAAATCAGGGATTCGATTAGGTATTCGGC
TGAGGTGAACGGTAGGCTTCATCGTTGGAGTTTTAGGAAGCTTCAAAACATAATCGAATACAAGGCCAAGCTGAAGGGGATAAAGGTTGTTTTTGTTAAT
CCTGCTTACACTTCGTCCCTGTGTCCGGTATGTGGGAGAAAGTTAAGCCCGAATGGGCACAGGGTCTTGAAGTGTCCTAAGTGTGGTTTTGAGGCCGATA
GGGACGTTATTGGCTCTTGGAATATCTCCCTTCGTGCCCTGAAGATGTGGGGAGTTTCCGTTCCCCCCGAAAGCCCCACGATGAAGACGGGAGTGGGGAA
GGTCGGCCGTAGCGATGTTTACGAACTTTACACAAATTACGGCTGACCAGAACGG
CCTCAGAACTCTTGGGAATCAGCAAGCCTACACTTCTCAGAAAAATCAAAACAGGCGAAATAAAAGCCTACAAAATAGGCAAAGAATACCGCATTCCAGA
AAGCGAAATAAAGAGACTTCTTGAGGGCAAAGTTCCCGATAAAGTTGTCATTTACGCCAGAGTCTCAAGCAGAGACCAGAAAGAAGACCTTGAACGACAA
GTCGAATACCTCAAAAACTACTGCTCCGCAAAAGGATACCAAGTTGCTAGAATCCTCACTGACATTTCATCAGGCCTAAACGAAAACCGGAAGGGTTTAA
AACAGCTCTTCAAACTCGTGGAAAGCGGAGAGGTAACCAAAGTCGTGATAACCTACAAGGACAGGCTCACCCGCTTTGGCTTCAAATACCTCGAACAATA
CTTCAACTCTCACGGTGTCGAGATTGAAGTAATCTTCAATGATGAAGAGAAAACGCCAGAGAAAGAATTAGTTGAAGACTTGTTAGCTATCGTTACCTCT
TTCGCTGGAAAGCTTTACGGAGCTCGTTCTCACAAGAAAAAACGCCTCGTCGAGGCGGTAAAGAATGCCCTCAGAGACGATTAAGCTCACGGCAAAATTC
AAGCTCAAAAACCCACCAGAGGAGTTAAACGACCTCTTCTCCACTTATCGGGAGATTGTGAACCACCTCATCAGCTATGCTTTCGAGAACAATGTTACGA
GCTTTTACAGGCTCAAAAAGGAAACATACAAAAGCCTCCGCAAGGAGTATCCAGAACTACCAAGCCATTACCACTACACAGCAACTCAAATGGCCACAAT
GATTTACAAGAGTTATCGGAAGCGGAAAAAGAAGGGTAAGGCTAATGGTAGGCCAGTTTTTAAGAAGGATGCCATAATGCTCGACGACCATCTCTTCAAG
CTCGACCTTGAGGCTGGAGTGATAAAACTCTCCACTCCGAGCGGGAGGGTTGAGCTGGAGTTTTATCCATCCAAGTATCACGAGAAGTTTAGGGACTGGA
AAATCGGCCAAGCGTGGTTGGTGAGGACTCCAAAAGGCGTTTTCATCAACGTGGTCTTTTCCAGAGAGGTTGAAGTGAGAGAACCTGAAGCCTTTGTCGG
CGTGGATTTGAACGAGAACAACGTTACGCTCAGCCTTCCAAACGGTGAGTTCGTCCAGATACTCACTCACGAGCGGGAGATAAGGACTGGCTACTTCCTA
AAACGGAGGAAGATTCAGAAAAAGCTTAGGACTAGAAAGAAAAGGAAAGAGCTTCTCGAAAAGTATGGGCAAAGGGAGAGGAACAGGCTGGACGACCTTT
ACCACAAATTAGCCAATAAAATCGTTGAGCTGGCGGAGAGATACAGTGGTATTGCTCTGGAGGATTTGACCGAAATCAGGGATTCGATTAGGTATTCGGC
TGAGGTGAACGGTAGGCTTCATCGTTGGAGTTTTAGGAAGCTTCAAAACATAATCGAATACAAGGCCAAGCTGAAGGGGATAAAGGTTGTTTTTGTTAAT
CCTGCTTACACTTCGTCCCTGTGTCCGGTATGTGGGAGAAAGTTAAGCCCGAATGGGCACAGGGTCTTGAAGTGTCCTAAGTGTGGTTTTGAGGCCGATA
GGGACGTTATTGGCTCTTGGAATATCTCCCTTCGTGCCCTGAAGATGTGGGGAGTTTCCGTTCCCCCCGAAAGCCCCACGATGAAGACGGGAGTGGGGAA
GGTCGGCCGTAGCGATGTTTACGAACTTTACACAAATTACGGCTGACCAGAACGG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
609 bp | 202 aa | 76 | 684 | + | No |
Chemistry : Serine
ORF sequence :
MKLYRTGKASELLGISKPTLLRKIKTGEIKAYKIGKEYRIPESEIKRLLEGKVPDKVVIYARVSSRDQKEDLERQVEYLKNYCSAKGYQVARILTDISSG
LNENRKGLKQLFKLVESGEVTKVVITYKDRLTRFGFKYLEQYFNSHGVEIEVIFNDEEKTPEKELVEDLLAIVTSFAGKLYGARSHKKKRLVEAVKNALR
DD
LNENRKGLKQLFKLVESGEVTKVVITYKDRLTRFGFKYLEQYFNSHGVEIEVIFNDEEKTPEKELVEDLLAIVTSFAGKLYGARSHKKKRLVEAVKNALR
DD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1182 bp | 393 aa | 665 | 1846 | + | No |
AG : TnpB
ORF sequence :
MPSETIKLTAKFKLKNPPEELNDLFSTYREIVNHLISYAFENNVTSFYRLKKETYKSLRKEYPELPSHYHYTATQMATMIYKSYRKRKKKGKANGRPVFK
KDAIMLDDHLFKLDLEAGVIKLSTPSGRVELEFYPSKYHEKFRDWKIGQAWLVRTPKGVFINVVFSREVEVREPEAFVGVDLNENNVTLSLPNGEFVQIL
THEREIRTGYFLKRRKIQKKLRTRKKRKELLEKYGQRERNRLDDLYHKLANKIVELAERYSGIALEDLTEIRDSIRYSAEVNGRLHRWSFRKLQNIIEYK
AKLKGIKVVFVNPAYTSSLCPVCGRKLSPNGHRVLKCPKCGFEADRDVIGSWNISLRALKMWGVSVPPESPTMKTGVGKVGRSDVYELYTNYG
KDAIMLDDHLFKLDLEAGVIKLSTPSGRVELEFYPSKYHEKFRDWKIGQAWLVRTPKGVFINVVFSREVEVREPEAFVGVDLNENNVTLSLPNGEFVQIL
THEREIRTGYFLKRRKIQKKLRTRKKRKELLEKYGQRERNRLDDLYHKLANKIVELAERYSGIALEDLTEIRDSIRYSAEVNGRLHRWSFRKLQNIIEYK
AKLKGIKVVFVNPAYTSSLCPVCGRKLSPNGHRVLKCPKCGFEADRDVIGSWNISLRALKMWGVSVPPESPTMKTGVGKVGRSDVYELYTNYG
Blast result :
Comments
ISTko2 is 97% (ORFA : the resolvase) and 93% (ORFB) aa similar to ISTsi1.
References
1] Isfinder annotation (2009)
2] Fukui,T., Atomi,H., Kanai,T., Matsumi,R., Fujiwara,S. and Imanaka,T. (2005) Genome Res. 15 (3), 352-363
2] Fukui,T., Atomi,H., Kanai,T., Matsumi,R., Fujiwara,S. and Imanaka,T. (2005) Genome Res. 15 (3), 352-363