ISKol6

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012785 ND Kosmotoga olearia
Kosmotoga olearia TBF 19.5.1
DNA section
IS Length : 1516 bp

Ends


Left end : CCGATGTAGGAGTAAAATAAAGGAGGCAGTCAGGAGGAAGAGAGGAACAGAGAACCGATCCGCCATAAGAGCGACTGCTTCTCACACTCCCTCTTCCATC
Right end : AGAAAGAAAAGTTATCCCTGCCTGTCTCTGTTGCTCAAACCAACTGCCATTTGGGAACAGTTTCAGGTAGTCTGTCTCCTTGACTTGACATAGTAGGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
AACTCGAGAAGAGCCGAGAA0
AGTCCGAGAATGTTGGAGAT0
ATCCGAGAGTGAAAAAACAT0
AGTCCGAGAAGAGGGCCGCT0

DNA sequence

CCGATGTAGGAGTAAAATAAAGGAGGCAGTCAGGAGGAAGAGAGGAACAGAGAACCGATCCGCCATAAGAGCGACTGCTTCTCACACTCCCTCTTCCATC
CTGGGAGTACTAGAGGATCAATAGTAGGATATCCGGGGAAACCCAGGAACGCTACATCGATTAACCTGTACTCATTGACTGCACAATGTTTTTTGGAGGA
ATCAGTATGGATATTGTGGGAATTGACTGGTCGTGGAATTTTCACACCTGCTATTCTATCGAACAGGATAAGGTTTTTAAGATCAAGGATGGTATAGCGG
GGTATGAGAAGCTGCTGAAAACAGTATCAAAAGACGCTGTTTTCGTCATTGAGGAGAGTTTCAATCGTTTGGGAGATTTCTTGCTGTCCAGAGGGAAAGA
GGTTTATCTCCTGCCACCGAAAAGGTCAAAGGAAGCCAGAGGCTATCATTCGAACGGCGTGAAGACAGATTCAACAGATGCCAGGTGTATCGCCCTTACC
TACAAAGAACACCCGGAATATTGTATTAAGGCAACACATGACGAACTCGGCATGCTTTTCAGGGAATTGTTGAGGCATTACAGGTACTATACCGACATGT
CCTCAAGACTTAAGAACAAACTTCAAAACGAACTTCATAATTATTTCCCTGAATATGCTAGGGTGATGGGTAATTCTTGGACAGATTGTGACGGGAGGAT
ATTCCTGCTCACCATATGCCCGGATGTAACCGAACTCAGGAAGACATCTGACAAGGAGATAAATAGACATTTCAAAGCGAATCATCTACGCTACACATCC
TCATTGAAAAGAAAGGTCAAAGAACTCAGGGAAAAAGCCATTGACTGGGGCATGTCAAAATACACCAGGGACATGATCGCGAATGTTGCCACACAACTTC
TGGAAGCAAAAAGAGAGAAAAAGAAAATAACAAAAGAGATGGAGAAAGAACTACGTAAATCGAAATACAACATAATACTGACGCTCCCGGGTGTTGGAGT
AGCTACAGGAATGGCATTAGTAACAGCATTTCTTACACACGAATTCAAAAATTACAGGGATTTCCAGAAGTATTGTGGAACTATGCCAATAGTATCCCAG
AGTGGTAATTTTCGCATGTGCAGGATGAGGAAAAACTGTGACAAGAAACTCAGAGGCATTCTCCATATGATGGCGATAAACGCGAAGAAATGCGGAGCAT
GGATGAAAGGCTACTATGACAAGAAGACAAATAAAGAGGGCAAGAAACCATCTCTTGCCCTCAGAGCATTGGCGAACATCCTCGTCAAGATAGCCTTCGC
CATGCTAAGAAACCTAAAAGCCTACGATGAGGAACTCTTCCTTTCCTCACGTGGGAACAAGAGTCCTCGGTTAAATTATACAACAAGAAATAGCATACCG
GGGACCAAAAAAATGAAGAAAGAAAAGTTATCCCTGCCTGTCTCTGTTGCTCAAACCAACTGCCATTTGGGAACAGTTTCAGGTAGTCTGTCTCCTTGAC
TTGACATAGTAGGTGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa2071499+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDIVGIDWSWNFHTCYSIEQDKVFKIKDGIAGYEKLLKTVSKDAVFVIEESFNRLGDFLLSRGKEVYLLPPKRSKEARGYHSNGVKTDSTDARCIALTYK
EHPEYCIKATHDELGMLFRELLRHYRYYTDMSSRLKNKLQNELHNYFPEYARVMGNSWTDCDGRIFLLTICPDVTELRKTSDKEINRHFKANHLRYTSSL
KRKVKELREKAIDWGMSKYTRDMIANVATQLLEAKREKKKITKEMEKELRKSKYNIILTLPGVGVATGMALVTAFLTHEFKNYRDFQKYCGTMPIVSQSG
NFRMCRMRKNCDKKLRGILHMMAINAKKCGAWMKGYYDKKTNKEGKKPSLALRALANILVKIAFAMLRNLKAYDEELFLSSRGNKSPRLNYTTRNSIPGT
KKMKKEKLSLPVSVAQTNCHLGTVSGSLSP

 

Blast result :
Comments
ISKol6 is 44% aa similar to ISCth14.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G. and Noll,K. (2009) Direct submission GenBank.