ISSoc2

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007775 ND Synechococcus sp.
Synechococcus sp. JA-3-3Ab
Synechococcus sp. JA-2-3B'a(2-13)
DNA section
IS Length : 1832 bp

Ends


IR Length : 0

IRL : CATGACTCTAGTCAATGATATGCTGGACTATACTGAAAATAATGTACAGT
IRR : GATACATTTACGCTGAACACTGCTGAGCATTACTGCTCAGCGGTGAAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGAGTTGAGAGCTTGCTACAA2
TGCTGAGGTGAGGCACGGATAT2
TGGCCTAGGGAGAATGGGGGTC2
CCTGGGTGGGAGTGTCAATAGG2
TCCCCAGAAGAGCACGAGCTGC2
AGGGCGAGGGAGGTTGTTGACA2
GCTCATCGAGAGTTTGCAGCTA2
CTTGTGTAAGAGCAACGTGGCT2
CTAGCCCAGGAGCTCGGTTGCT2
GCCGTAGGAGAGCTAAAAGTTC2
TCGGGCTGGGAGAAAGCCATTT2
CTGGTTTGAGAGGTCGAAAACT2
CATCTGTGGAAGTAGCCGGCTA2
ATGTCAAGGGAGTACCGGGCAG2
AGCCAGGTGGAGGATCCTGTAG2
GGCTCCAAAGAGCTTGCCCGTC2
CCCCTGGGAGAGCTAGGCAAAT2
CTGCGAGCAGAGGTTGGTGGTG2
CTTAGGTTGGAGAAAAAACCCA2

DNA sequence

CATGACTCTAGTCAATGATATGCTGGACTATACTGAAAATAATGTACAGTATGTTCAGTATGGCCGCTTGGTATGGCTAGATATGTAAAACCGAGAGAAG
CGGCGGATTATTTTGGGGTGTGTCTCCACACTTTGAGGCGATGGGAACAGAAGGGCTGGATCCATGCAGTACGTACACCATCTGGTAGAGCGAGAAGGTA
TGACCTCGACAGCTACATTGGCCTCCGGCCCGCTGACGCGAACAGAGCGCCCAAGAAGGACAAACGAGTCGTTTTGTACGCCCGAGTCAGCAGTCGAGGG
CAGAAACCAGACTTGGAGAGACAGATTGCAAGACTGGTTGACCTCTATCCTGGAGCCGAAGTGGTCGGAGAGGTTGGCGGCGGTCTCGACTTCAAAAGAC
CAAAGTTCCTTGCCTTATTGGAACGAGTTCGTGCAGGAGATATCGGAACGATTGTGGTCGCTCACCGGGATCGACTCTGCCGGTTTGGATTTGAGTTCGT
TGAGTGGTACTGCCGTCAATACGGGTGCGAAATCTTGGTTCTCGATGACGATCACCTTTCTCCCCAACAGGAACTGGTTGAGGATATCCTCACCATCCTG
CACTGCTTCAGCAGTCGGCTCTACGGACTCAGAAAATACCGGGCTGCAATCGAGAAAGATACGGATTTATCCGGAGCCAGCGCTGGCTAAAGTTTGGAAG
CGGTGGCAAGCGGCGTGCCGGTACTGCTACAACCAAGCGATTGCCTATCAGCGCCAGCATGGTGCCCCAAAAACGGCCAGAAAGCTGCGGGACATCATCC
TGCGCTCCGACCTGCCCGGGTGGGTGAAGGACGTCCCTTGCCACATCAAGCAGAACGCGGTCGTCGAGGCGTGGTTGGCGTTCCGCCGAAGCAAAGACGC
GAGGTTTCGCAGTGTGCGGGACAGGTCGCATACGCTGCAATTCAACGCCGGCAACTTTCGCAATGGGACGTGGTATCCGAAACTCACCCGAGGTTTGGCG
TTCCGTGCATCCGAGGAGATGCCCAGAGAATGGGCACGCGGAACTGAGCTAATGCGGGTGAAAGACAGATGGTATGCCATCTTTCCTGAGCCCGTGAACG
AGCAGTGTTCGTTAGCAAAGGGGGTGATCGCACTTGATCCTGGAGTAAGAAGCTTCCTTACAGGGTTTGATGGGGCGGGCTTTGTAGATATCGCCAAGGG
GGACTTTGGCAGGATCGTTCGGCTGTGCTACCACCTAGACGATCTGCAATCTAGGCTGAGTAAAGCACCGAGATCCAAGCGTAGGCGAATGCGGCAAGCG
GCGTTTCGTCTGCGGGAGAGAATCAGGAACTTGGTGGACGAGTGCCATCGCAAGGTAGCGGCGTTCCTAACGGATAACTACCGATTGATATTCCTCCCCA
CTTTCGAGTCAGCCAAGATGGTTGCCAAGGCAGGGAGGAAGTTTGGTAGCAAGACAGCAAGGGCGATGCTCACCTGGGCGCACTACCGGTTCAAGCAGTT
CCTGAAGTTTCAAGCCAAGAAGAAAAACGTGGTTGTCGTGGAAGTATCGGAAGCGTACACCAGCAAAACCTGTACCAAGTGCGGGCACATCCACACTAAG
TTGGGTGGCGCAAAGGTGTTTCGATGCCCAAAGTGCAACCATAGGCTACCACGAGATTGGCAAGGCGCTCTGGGCGTTATGCTCAGGGCTTTGCGGGATA
CCGCCTTTCTGTTTGGACTCCGTCCCGCTAACGCGGTCGCGTCAGCATCGCGTAGTAACAACGGAAACGGACAGAATGCTATCGCTTCACCGCTGAGCAG
TAATGCTCAGCAGTGTTCAGCGTAAATGTATC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
618 bp205 aa73690+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MARYVKPREAADYFGVCLHTLRRWEQKGWIHAVRTPSGRARRYDLDSYIGLRPADANRAPKKDKRVVLYARVSSRGQKPDLERQIARLVDLYPGAEVVGE
VGGGLDFKRPKFLALLERVRAGDIGTIVVAHRDRLCRFGFEFVEWYCRQYGCEILVLDDDHLSPQQELVEDILTILHCFSSRLYGLRKYRAAIEKDTDLS
GASAG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1281 bp426 aa5451825+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTITFLPNRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARKLRDIILRSDLPGWVKDVPCH
IKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMPREWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPG
VRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSKAPRSKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKF
GSKTARAMLTWAHYRFKQFLKFQAKKKNVVVVEVSEAYTSKTCTKCGHIHTKLGGAKVFRCPKCNHRLPRDWQGALGVMLRALRDTAFLFGLRPANAVAS
ASRSNNGNGQNAIASPLSSNAQQCSA

 

Blast result :
Comments
ISSoc2 is 62% (ORFA, the transposase) aa similar to ISAfe11 and 44% (ORFB) to ISvNY2A. Some copies have one or two deletions in the ORFB.
References
1] ISfinder annotation (2009)
2] Bhaya,D., Grossman,A.R., Steunou,A.S., Khuri,N., Cohan,F.M., Hamamura,N., Melendrez,M.C., Bateson,M.M., Ward,D.M. and Heidelberg,J.F. (2007) ISME J 1 (8), 703-713
3] Allewalt,J.P., Bateson,M.M., Revsbech,N.P., Slack,K. and Ward,D.M. (2006) Appl. Environ. Microbiol. 72 (1), 544-550
4] Nelson, W.C., Wollerman, L., Bhaya, D., Heidelberg, J.F. (2011)