ISRsp9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Rhizhobium sp. | Rhizhobium sp. NT-26 |
DNA section
IS Length : 818 bp
Ends
IR Length : 18/20
IRL : GGAGGCGTCGCCTTAACCGGCTGGTGCGGATCGAGGCAATAGTCTATCGG
IRR : GGTGGCGTCGCCTTAACCTGACGTAGGACGCAATCATTTCTTTGTCCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTGCGAGGCGCCCTGCGTG | TTCGAGCGACATGAGGGGGA | 0 | |
ATCCAAGGATCCCGCCGAGC | GTATGCGACGCTTCAGGCAT | 0 |
DNA sequence
GGAGGCGTCGCCTTAACCGGCTGGTGCGGATCGAGGCAATAGTCTATCGGCATGACTGACGATGCGTCCGCCCGATACAAACGCCACCGCTTTCCAGCCG
AGATCATCGCGCATGCGGTATGGCTCTATTACCGGTTCCCGCTGAGCCTGCGCGATATCGAAGACCTGCTTGCCGAGCGCGGCATTGCCGTCTCGTTTCA
GACCGTCTCAGAATGGACGACTAAGTTTGGCCTGAAATTCGCCCACCAACTCAAGCGGCGGTCGATCGGCAACTTCGCAGACAAATGGCATCTCGATGAG
ATGGTCGTATCGATCAAGGGCAAGAAATACTGGCTGTGGCGCGCCGTCGATGCCAACGGCTACGTTCTCGATGCTCTGCTGCAAAGCCGCAGAAACAAGG
GAGCCGCTCTTCGGCTGATGCGCAAATTGTTGAAGAGCCAAGGTGTTGCGCCGCGCGTGATGGTGACAGACAAGCTGCGTTCTTATTCCGCCGCAAAGCG
AGAGATCATGCTGGGGATCGAACACCGTTCGCACAAAGGGCTCAACAACCTCGCAGAAAATTCTCACCTTCCCGTTCGACGACGAGAGCGACGCATGATG
CGGTTCAAGTCGGCAGGTCAATGCCAACGTTTCGTCTCAACCCACGGCCAAATTGCCAATCTTTTCCAACTTCATCGAAAACACCTGAATGCCGCTGATC
ATCGCCAACTCCGCGCCCTCGCCAGCGCCACCTGGCGTGAGATCGCGTTGCCGATCCAAGCCTGAAATTCAGGACAAAGAAATGATTGCGTCCTACGTCA
GGTTAAGGCGACGCCACC
AGATCATCGCGCATGCGGTATGGCTCTATTACCGGTTCCCGCTGAGCCTGCGCGATATCGAAGACCTGCTTGCCGAGCGCGGCATTGCCGTCTCGTTTCA
GACCGTCTCAGAATGGACGACTAAGTTTGGCCTGAAATTCGCCCACCAACTCAAGCGGCGGTCGATCGGCAACTTCGCAGACAAATGGCATCTCGATGAG
ATGGTCGTATCGATCAAGGGCAAGAAATACTGGCTGTGGCGCGCCGTCGATGCCAACGGCTACGTTCTCGATGCTCTGCTGCAAAGCCGCAGAAACAAGG
GAGCCGCTCTTCGGCTGATGCGCAAATTGTTGAAGAGCCAAGGTGTTGCGCCGCGCGTGATGGTGACAGACAAGCTGCGTTCTTATTCCGCCGCAAAGCG
AGAGATCATGCTGGGGATCGAACACCGTTCGCACAAAGGGCTCAACAACCTCGCAGAAAATTCTCACCTTCCCGTTCGACGACGAGAGCGACGCATGATG
CGGTTCAAGTCGGCAGGTCAATGCCAACGTTTCGTCTCAACCCACGGCCAAATTGCCAATCTTTTCCAACTTCATCGAAAACACCTGAATGCCGCTGATC
ATCGCCAACTCCGCGCCCTCGCCAGCGCCACCTGGCGTGAGATCGCGTTGCCGATCCAAGCCTGAAATTCAGGACAAAGAAATGATTGCGTCCTACGTCA
GGTTAAGGCGACGCCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
714 bp | 237 aa | 52 | 765 | + | No |
Chemistry : DDE
ORF sequence :
MTDDASARYKRHRFPAEIIAHAVWLYYRFPLSLRDIEDLLAERGIAVSFQTVSEWTTKFGLKFAHQLKRRSIGNFADKWHLDEMVVSIKGKKYWLWRAVD
ANGYVLDALLQSRRNKGAALRLMRKLLKSQGVAPRVMVTDKLRSYSAAKREIMLGIEHRSHKGLNNLAENSHLPVRRRERRMMRFKSAGQCQRFVSTHGQ
IANLFQLHRKHLNAADHRQLRALASATWREIALPIQA
ANGYVLDALLQSRRNKGAALRLMRKLLKSQGVAPRVMVTDKLRSYSAAKREIMLGIEHRSHKGLNNLAENSHLPVRRRERRMMRFKSAGQCQRFVSTHGQ
IANLFQLHRKHLNAADHRQLRALASATWREIALPIQA
Blast result :
Comments
ISRsp9 is 71% aa similar to ISRH1. There are two copies in NT26 genome.
References
1] Florent Lasalle (2009) Direct submission.