ISRsp9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Rhizhobium sp.
Rhizhobium sp. NT-26
DNA section
IS Length : 818 bp

Ends


IR Length : 18/20

IRL : GGAGGCGTCGCCTTAACCGGCTGGTGCGGATCGAGGCAATAGTCTATCGG
IRR : GGTGGCGTCGCCTTAACCTGACGTAGGACGCAATCATTTCTTTGTCCTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTGCGAGGCGCCCTGCGTGTTCGAGCGACATGAGGGGGA0
ATCCAAGGATCCCGCCGAGCGTATGCGACGCTTCAGGCAT0

DNA sequence

GGAGGCGTCGCCTTAACCGGCTGGTGCGGATCGAGGCAATAGTCTATCGGCATGACTGACGATGCGTCCGCCCGATACAAACGCCACCGCTTTCCAGCCG
AGATCATCGCGCATGCGGTATGGCTCTATTACCGGTTCCCGCTGAGCCTGCGCGATATCGAAGACCTGCTTGCCGAGCGCGGCATTGCCGTCTCGTTTCA
GACCGTCTCAGAATGGACGACTAAGTTTGGCCTGAAATTCGCCCACCAACTCAAGCGGCGGTCGATCGGCAACTTCGCAGACAAATGGCATCTCGATGAG
ATGGTCGTATCGATCAAGGGCAAGAAATACTGGCTGTGGCGCGCCGTCGATGCCAACGGCTACGTTCTCGATGCTCTGCTGCAAAGCCGCAGAAACAAGG
GAGCCGCTCTTCGGCTGATGCGCAAATTGTTGAAGAGCCAAGGTGTTGCGCCGCGCGTGATGGTGACAGACAAGCTGCGTTCTTATTCCGCCGCAAAGCG
AGAGATCATGCTGGGGATCGAACACCGTTCGCACAAAGGGCTCAACAACCTCGCAGAAAATTCTCACCTTCCCGTTCGACGACGAGAGCGACGCATGATG
CGGTTCAAGTCGGCAGGTCAATGCCAACGTTTCGTCTCAACCCACGGCCAAATTGCCAATCTTTTCCAACTTCATCGAAAACACCTGAATGCCGCTGATC
ATCGCCAACTCCGCGCCCTCGCCAGCGCCACCTGGCGTGAGATCGCGTTGCCGATCCAAGCCTGAAATTCAGGACAAAGAAATGATTGCGTCCTACGTCA
GGTTAAGGCGACGCCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
714 bp237 aa52765+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDDASARYKRHRFPAEIIAHAVWLYYRFPLSLRDIEDLLAERGIAVSFQTVSEWTTKFGLKFAHQLKRRSIGNFADKWHLDEMVVSIKGKKYWLWRAVD
ANGYVLDALLQSRRNKGAALRLMRKLLKSQGVAPRVMVTDKLRSYSAAKREIMLGIEHRSHKGLNNLAENSHLPVRRRERRMMRFKSAGQCQRFVSTHGQ
IANLFQLHRKHLNAADHRQLRALASATWREIALPIQA

 

Blast result :
Comments
ISRsp9 is 71% aa similar to ISRH1. There are two copies in NT26 genome.
References
1] Florent Lasalle (2009) Direct submission.