ISRsp8
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Rhizhobium sp. | Rhizhobium sp. NT-26 |
DNA section
IS Length : 1695 bp
Ends
IR Length : 22
IRL : GGTTCTTCCTCACTTTGTGTGGTTCATTCGCCGTTAGCGAGGTTTTGGCT
IRR : GGTTCTTCCTCACTTTGTGTGGAGCCGCGGCAGCATTCGTGCCTTCAGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCGCTTTGCAGTTAATCG | CGATTAAGTGCCACGCGACA | 0 | |
TGTCGCGTGGCACTTAATCG | GTTAAAGTTGAGAGACTGCG | 0 | |
AGCTTAACAGCTGTTAAAGT | CGGTTAACTGCCAAACGACA | 0 | |
GCCTTTTTGGAGACCTTGTG | ACTTTAACAGCTGTTAAGCT | 0 |
DNA sequence
GGTTCTTCCTCACTTTGTGTGGTTCATTCGCCGTTAGCGAGGTTTTGGCTATGGGCGGGCATGCGAACGAAATCGAAATGGTCGCCCGGTCCAGGGGTCA
AAGTACTGGGTGTCGCGCTCACCGTTGATCACGGTTGGGTTGTTTCCGCAGCTGGATCCAAGATCGGAGTATGCCCCGATTGTGGATGTCGAAGCCGAAG
TCGGCATGGCTGGTCCTGCCGCAGCCTCCAGGATCTGCCAGTCCAGGGCAAGCCCGTGACAGTGAAGCTCCTGCTGAGCCGCTGGCGATGTGCACATGGG
GAATGCGCACGACGAACGTTCACCGACCGTCTTCCGATGGTAGCTGATCCATACGCGCGTCGGACAAGAAGGGTCGGAGAGATTGTTGGCTTGCTCGGCC
ATAGCACTGGCGGCCGTCCTGGCGAGCGGTTGATGCAACGGCTCGGCATACCGGTCAGCGACGACACTATCCTGCGGCAACTGAAACGGGATGCTGCAGT
TGCCCAACGCAATTCCAAGATACGGGTGGTCGGTATCGATGATTGGAGTTGGCGGCGCGCGACGAGCTATGGGACCATCATGGTCGACCTCGAGCGCCGC
TCGGTTATTGACATACTGGATGACCGTAGCGTCGAGAATGCGGCCGAGTGGCTTCGGAGTCATCCTTCCATCGAGATTGTCAGCCGCGACCGCTGCGGCC
TGTATGCGCAGGCCACCCGTGAAGGCGCACCGCAGGCCCGGCAGGTCGCCGATCGGTTTCATCTGGTCCAGAACCTTCGTTCGGCCATCGAAGAACAGAT
GAGCCTTTCCGGGCGTGCCACCGGCAGGGCCATTCTTTCGGAGGACGCAATTGTTGACGCTGCGACACATCGCCGGCGCGCCCGTCTTGCGCATAGGCAA
TCTCGCCAGGAGATATTCGACATGCTCCATGCCTTGCGCCAGCAAGGGCTGTCCTACAGCGAGATCGCCAGACGGACCGGCTATGAGCGTCGCAGCATAA
CGAAGTGGCTCAAGTTCGAGGCTCCACAAGACAGGCGACGAGCAGCACTGAACCCCACATCACCATGGTATTTCGAAGCCTTCCTTGCGCAATGCTGGAA
GGATGGGAACCGGCGCGGACGGCATCTGTTTCACGACGTCAAGCAGCGCGGCTACACCGGCAGCTTCGCCAATCTGGAGCGGTTGCTCGGAGCTTGGCGG
CGGGCCGAAAGGGGACAGGCCGATGATGTACCGCCCGCCGCGTTGAAGTCGGAACCGGTTCGAGATCCCGAAACCGGTCATGCAATCTCTCCGGTGGTTG
CCGCGGCGCTATGTATCAAGCCGCGAGGCCTGCTGACGGACCGGCAGGCAAGGAAGGTCGACGCCCTGAAGCAGGGATCTGAGGCGTTTGTCGAGATGCG
ACGCCTGGCGATGCGCTTCAACGGCATCCTTCGCGGCAAGAGATCGCCACCACTGGATGCATGGATCGACGATGCGATCGACTCCGAGCTCATCCCTATC
ATGCGGTTCGCTCGCGTCCTTCGCAGGGACATCGATGCCGTCAACAACGCCATCGAGCTGCCCTGGAGCAACGGGCAGGCCGAAGGCCAGATCAACCGCC
TCAAGACCCTCAAGCGAGCAATGTACGGTCGGGCAGGCCCTGAATTGCTGAAGGCACGAATGCTGCCGCGGCTCCACACAAAGTGAGGAAGAACC
AAGTACTGGGTGTCGCGCTCACCGTTGATCACGGTTGGGTTGTTTCCGCAGCTGGATCCAAGATCGGAGTATGCCCCGATTGTGGATGTCGAAGCCGAAG
TCGGCATGGCTGGTCCTGCCGCAGCCTCCAGGATCTGCCAGTCCAGGGCAAGCCCGTGACAGTGAAGCTCCTGCTGAGCCGCTGGCGATGTGCACATGGG
GAATGCGCACGACGAACGTTCACCGACCGTCTTCCGATGGTAGCTGATCCATACGCGCGTCGGACAAGAAGGGTCGGAGAGATTGTTGGCTTGCTCGGCC
ATAGCACTGGCGGCCGTCCTGGCGAGCGGTTGATGCAACGGCTCGGCATACCGGTCAGCGACGACACTATCCTGCGGCAACTGAAACGGGATGCTGCAGT
TGCCCAACGCAATTCCAAGATACGGGTGGTCGGTATCGATGATTGGAGTTGGCGGCGCGCGACGAGCTATGGGACCATCATGGTCGACCTCGAGCGCCGC
TCGGTTATTGACATACTGGATGACCGTAGCGTCGAGAATGCGGCCGAGTGGCTTCGGAGTCATCCTTCCATCGAGATTGTCAGCCGCGACCGCTGCGGCC
TGTATGCGCAGGCCACCCGTGAAGGCGCACCGCAGGCCCGGCAGGTCGCCGATCGGTTTCATCTGGTCCAGAACCTTCGTTCGGCCATCGAAGAACAGAT
GAGCCTTTCCGGGCGTGCCACCGGCAGGGCCATTCTTTCGGAGGACGCAATTGTTGACGCTGCGACACATCGCCGGCGCGCCCGTCTTGCGCATAGGCAA
TCTCGCCAGGAGATATTCGACATGCTCCATGCCTTGCGCCAGCAAGGGCTGTCCTACAGCGAGATCGCCAGACGGACCGGCTATGAGCGTCGCAGCATAA
CGAAGTGGCTCAAGTTCGAGGCTCCACAAGACAGGCGACGAGCAGCACTGAACCCCACATCACCATGGTATTTCGAAGCCTTCCTTGCGCAATGCTGGAA
GGATGGGAACCGGCGCGGACGGCATCTGTTTCACGACGTCAAGCAGCGCGGCTACACCGGCAGCTTCGCCAATCTGGAGCGGTTGCTCGGAGCTTGGCGG
CGGGCCGAAAGGGGACAGGCCGATGATGTACCGCCCGCCGCGTTGAAGTCGGAACCGGTTCGAGATCCCGAAACCGGTCATGCAATCTCTCCGGTGGTTG
CCGCGGCGCTATGTATCAAGCCGCGAGGCCTGCTGACGGACCGGCAGGCAAGGAAGGTCGACGCCCTGAAGCAGGGATCTGAGGCGTTTGTCGAGATGCG
ACGCCTGGCGATGCGCTTCAACGGCATCCTTCGCGGCAAGAGATCGCCACCACTGGATGCATGGATCGACGATGCGATCGACTCCGAGCTCATCCCTATC
ATGCGGTTCGCTCGCGTCCTTCGCAGGGACATCGATGCCGTCAACAACGCCATCGAGCTGCCCTGGAGCAACGGGCAGGCCGAAGGCCAGATCAACCGCC
TCAAGACCCTCAAGCGAGCAATGTACGGTCGGGCAGGCCCTGAATTGCTGAAGGCACGAATGCTGCCGCGGCTCCACACAAAGTGAGGAAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 516 aa | 139 | 1686 | + | No |
Chemistry : Unknow
ORF sequence :
VVSAAGSKIGVCPDCGCRSRSRHGWSCRSLQDLPVQGKPVTVKLLLSRWRCAHGECARRTFTDRLPMVADPYARRTRRVGEIVGLLGHSTGGRPGERLMQ
RLGIPVSDDTILRQLKRDAAVAQRNSKIRVVGIDDWSWRRATSYGTIMVDLERRSVIDILDDRSVENAAEWLRSHPSIEIVSRDRCGLYAQATREGAPQA
RQVADRFHLVQNLRSAIEEQMSLSGRATGRAILSEDAIVDAATHRRRARLAHRQSRQEIFDMLHALRQQGLSYSEIARRTGYERRSITKWLKFEAPQDRR
RAALNPTSPWYFEAFLAQCWKDGNRRGRHLFHDVKQRGYTGSFANLERLLGAWRRAERGQADDVPPAALKSEPVRDPETGHAISPVVAAALCIKPRGLLT
DRQARKVDALKQGSEAFVEMRRLAMRFNGILRGKRSPPLDAWIDDAIDSELIPIMRFARVLRRDIDAVNNAIELPWSNGQAEGQINRLKTLKRAMYGRAG
PELLKARMLPRLHTK
RLGIPVSDDTILRQLKRDAAVAQRNSKIRVVGIDDWSWRRATSYGTIMVDLERRSVIDILDDRSVENAAEWLRSHPSIEIVSRDRCGLYAQATREGAPQA
RQVADRFHLVQNLRSAIEEQMSLSGRATGRAILSEDAIVDAATHRRRARLAHRQSRQEIFDMLHALRQQGLSYSEIARRTGYERRSITKWLKFEAPQDRR
RAALNPTSPWYFEAFLAQCWKDGNRRGRHLFHDVKQRGYTGSFANLERLLGAWRRAERGQADDVPPAALKSEPVRDPETGHAISPVVAAALCIKPRGLLT
DRQARKVDALKQGSEAFVEMRRLAMRFNGILRGKRSPPLDAWIDDAIDSELIPIMRFARVLRRDIDAVNNAIELPWSNGQAEGQINRLKTLKRAMYGRAG
PELLKARMLPRLHTK
Blast result :
Comments
ISRsp8 is 51% aa similar to ISMex24. There are 4 copies in NT26 genome.
References
1] Florent Lasalle (2009) Direct submission.