ISRsp8

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Rhizhobium sp.
Rhizhobium sp. NT-26
DNA section
IS Length : 1695 bp

Ends


IR Length : 22

IRL : GGTTCTTCCTCACTTTGTGTGGTTCATTCGCCGTTAGCGAGGTTTTGGCT
IRR : GGTTCTTCCTCACTTTGTGTGGAGCCGCGGCAGCATTCGTGCCTTCAGCA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCGCTTTGCAGTTAATCGCGATTAAGTGCCACGCGACA0
TGTCGCGTGGCACTTAATCGGTTAAAGTTGAGAGACTGCG0
AGCTTAACAGCTGTTAAAGTCGGTTAACTGCCAAACGACA0
GCCTTTTTGGAGACCTTGTGACTTTAACAGCTGTTAAGCT0

DNA sequence

GGTTCTTCCTCACTTTGTGTGGTTCATTCGCCGTTAGCGAGGTTTTGGCTATGGGCGGGCATGCGAACGAAATCGAAATGGTCGCCCGGTCCAGGGGTCA
AAGTACTGGGTGTCGCGCTCACCGTTGATCACGGTTGGGTTGTTTCCGCAGCTGGATCCAAGATCGGAGTATGCCCCGATTGTGGATGTCGAAGCCGAAG
TCGGCATGGCTGGTCCTGCCGCAGCCTCCAGGATCTGCCAGTCCAGGGCAAGCCCGTGACAGTGAAGCTCCTGCTGAGCCGCTGGCGATGTGCACATGGG
GAATGCGCACGACGAACGTTCACCGACCGTCTTCCGATGGTAGCTGATCCATACGCGCGTCGGACAAGAAGGGTCGGAGAGATTGTTGGCTTGCTCGGCC
ATAGCACTGGCGGCCGTCCTGGCGAGCGGTTGATGCAACGGCTCGGCATACCGGTCAGCGACGACACTATCCTGCGGCAACTGAAACGGGATGCTGCAGT
TGCCCAACGCAATTCCAAGATACGGGTGGTCGGTATCGATGATTGGAGTTGGCGGCGCGCGACGAGCTATGGGACCATCATGGTCGACCTCGAGCGCCGC
TCGGTTATTGACATACTGGATGACCGTAGCGTCGAGAATGCGGCCGAGTGGCTTCGGAGTCATCCTTCCATCGAGATTGTCAGCCGCGACCGCTGCGGCC
TGTATGCGCAGGCCACCCGTGAAGGCGCACCGCAGGCCCGGCAGGTCGCCGATCGGTTTCATCTGGTCCAGAACCTTCGTTCGGCCATCGAAGAACAGAT
GAGCCTTTCCGGGCGTGCCACCGGCAGGGCCATTCTTTCGGAGGACGCAATTGTTGACGCTGCGACACATCGCCGGCGCGCCCGTCTTGCGCATAGGCAA
TCTCGCCAGGAGATATTCGACATGCTCCATGCCTTGCGCCAGCAAGGGCTGTCCTACAGCGAGATCGCCAGACGGACCGGCTATGAGCGTCGCAGCATAA
CGAAGTGGCTCAAGTTCGAGGCTCCACAAGACAGGCGACGAGCAGCACTGAACCCCACATCACCATGGTATTTCGAAGCCTTCCTTGCGCAATGCTGGAA
GGATGGGAACCGGCGCGGACGGCATCTGTTTCACGACGTCAAGCAGCGCGGCTACACCGGCAGCTTCGCCAATCTGGAGCGGTTGCTCGGAGCTTGGCGG
CGGGCCGAAAGGGGACAGGCCGATGATGTACCGCCCGCCGCGTTGAAGTCGGAACCGGTTCGAGATCCCGAAACCGGTCATGCAATCTCTCCGGTGGTTG
CCGCGGCGCTATGTATCAAGCCGCGAGGCCTGCTGACGGACCGGCAGGCAAGGAAGGTCGACGCCCTGAAGCAGGGATCTGAGGCGTTTGTCGAGATGCG
ACGCCTGGCGATGCGCTTCAACGGCATCCTTCGCGGCAAGAGATCGCCACCACTGGATGCATGGATCGACGATGCGATCGACTCCGAGCTCATCCCTATC
ATGCGGTTCGCTCGCGTCCTTCGCAGGGACATCGATGCCGTCAACAACGCCATCGAGCTGCCCTGGAGCAACGGGCAGGCCGAAGGCCAGATCAACCGCC
TCAAGACCCTCAAGCGAGCAATGTACGGTCGGGCAGGCCCTGAATTGCTGAAGGCACGAATGCTGCCGCGGCTCCACACAAAGTGAGGAAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1548 bp516 aa1391686+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VVSAAGSKIGVCPDCGCRSRSRHGWSCRSLQDLPVQGKPVTVKLLLSRWRCAHGECARRTFTDRLPMVADPYARRTRRVGEIVGLLGHSTGGRPGERLMQ
RLGIPVSDDTILRQLKRDAAVAQRNSKIRVVGIDDWSWRRATSYGTIMVDLERRSVIDILDDRSVENAAEWLRSHPSIEIVSRDRCGLYAQATREGAPQA
RQVADRFHLVQNLRSAIEEQMSLSGRATGRAILSEDAIVDAATHRRRARLAHRQSRQEIFDMLHALRQQGLSYSEIARRTGYERRSITKWLKFEAPQDRR
RAALNPTSPWYFEAFLAQCWKDGNRRGRHLFHDVKQRGYTGSFANLERLLGAWRRAERGQADDVPPAALKSEPVRDPETGHAISPVVAAALCIKPRGLLT
DRQARKVDALKQGSEAFVEMRRLAMRFNGILRGKRSPPLDAWIDDAIDSELIPIMRFARVLRRDIDAVNNAIELPWSNGQAEGQINRLKTLKRAMYGRAG
PELLKARMLPRLHTK

 

Blast result :
Comments
ISRsp8 is 51% aa similar to ISMex24. There are 4 copies in NT26 genome.
References
1] Florent Lasalle (2009) Direct submission.