ISTte1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003869 | ND | Thermoanaerobacter tengcongensis | Thermoanaerobacter tengcongensis MB4 |
DNA section
IS Length : 1566 bp
Ends
IR Length : 13/15
IRL : CAGACTGTTGACAAAATATCGGGAACCCGTTATTATGAGAAGGGTTCCTT
IRR : CAGTTTGTTGACAAAGCAAAATTTTAGCCCCTGTTTTCTTAGTACCGAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGACACTATCAACCTCCTCT | TGAGGAGAATAACCTCCTCT | 0 |
DNA sequence
CAGACTGTTGACAAAATATCGGGAACCCGTTATTATGAGAAGGGTTCCTTGTTTTTTTAACGGTACAAAGCAAAAGAGGAGAGGAGAAGAAAGATGTTAT
CAAAGAAAGAGGATGCAAGACATCAAATAGAATTTGTAAGCATAGATCAATTAGTACCACAAGACCACCTTTTAAGAAAGATAGAAAAAGTCATAGACTT
TAGCTTCATATACGATTTAGTAAAAGACAAATATTCCGAGGGTCACGGCAGACCAAGCATAGACCCAGTAGTACTCATAAAAATACTTTTCATTCAATAT
CTTTTTGGCATACCATCGATGAGGAGGACAATAGCAGAAATAAAAACAAATGTAGCGTATAGATGGTTTTTAGGGTATGGGCTGACAGAAGAAATACCTC
ATTTTTCAACATTTAGTCAGAACTACATAAGAAGATTCAAAGGGACAGACATATTTGAGAAAATATTTACGAAGATTTTAGAAGAAGCAATAAAACATGG
GCTAGTAAATGCAGAGGAAGTATTCATAGATTCAACCCATGTAAAAGCAAGTGCCAACAAGAAGAAATACACCAAAGAAATAGTAGAACAAGAAGCCAGG
ACTTATCAAGAAAAACTAGAAGAAGAAATAAACAAAGATAGAGAAGCTCATGGCAAAAAGCCATTAAAGAAAATCAAGAAGATAAAGACGAAAGAAGTGA
AAGTAAGCAAAACAGACCCAGATAGCGGAATGTTAAACAAAAACGGAAAAGAAAAAATCTTTGCATATTCTTTTCATACAGCCTGCGATAAAAATGGATT
TGTATTAGGAGTAAAAGTTGAAGCAGCAAATGTACACGACAGTGTGATGTTTCAAGAAGTATTAGAAGAAGTTGAAAAGAGGGTAAGAAAACCGAAAGCA
ATAGCAGTAGATGCAGGCTATAAAAATCCGTACATATTAAAGACAATATTTGATAGACAAATAATACCAGCAGTACCATACACAAGGCCAAAAACAAAAG
ATGGTTTCATGAAAAAACATGAATTTGTTTATGATGAATACTATGACTGTTACATATGCCCGCAGAATGAAATATTAACATATGTTACAACCAACAGAGA
AGGATATAGAGAATACAAATCAAACCCAGAAAAATGTAAAAACTGTCCTCTAAGAGAAAAGTGTACCCAAAGTAAAGACTACACAAAGAGGATATTCAGG
CACATATGGGAAGGATATGTAGAAGAAGCAGAACACCTAAGGCATACACCTTACTGTAAAGAAGTATATGAGAGAAGGAAAGAGACAATAGAGAGAGTAT
TTGCAGATTTAAAGGAGAAGCATGGTTTGCGATGGACGACGTTAAGAGGGAAGGAAAAATTGTCCATGCAAGCGATGCTTGTTTTTGCTGCCATGAATTT
AAAGAAAATGGCCTTATGGTTATGGAGGAAGGGCAAAGGGCCCTTTGACATTTCAAAACTTTATCCATTATTTGGAGTTTTAAAGAAAATTTTATCCAGA
TATATACAGCCCCTGCTTTCGGTACTAAGAAAACAGGGGCTAAAATTTTGCTTTGTCAACAAACTG
CAAAGAAAGAGGATGCAAGACATCAAATAGAATTTGTAAGCATAGATCAATTAGTACCACAAGACCACCTTTTAAGAAAGATAGAAAAAGTCATAGACTT
TAGCTTCATATACGATTTAGTAAAAGACAAATATTCCGAGGGTCACGGCAGACCAAGCATAGACCCAGTAGTACTCATAAAAATACTTTTCATTCAATAT
CTTTTTGGCATACCATCGATGAGGAGGACAATAGCAGAAATAAAAACAAATGTAGCGTATAGATGGTTTTTAGGGTATGGGCTGACAGAAGAAATACCTC
ATTTTTCAACATTTAGTCAGAACTACATAAGAAGATTCAAAGGGACAGACATATTTGAGAAAATATTTACGAAGATTTTAGAAGAAGCAATAAAACATGG
GCTAGTAAATGCAGAGGAAGTATTCATAGATTCAACCCATGTAAAAGCAAGTGCCAACAAGAAGAAATACACCAAAGAAATAGTAGAACAAGAAGCCAGG
ACTTATCAAGAAAAACTAGAAGAAGAAATAAACAAAGATAGAGAAGCTCATGGCAAAAAGCCATTAAAGAAAATCAAGAAGATAAAGACGAAAGAAGTGA
AAGTAAGCAAAACAGACCCAGATAGCGGAATGTTAAACAAAAACGGAAAAGAAAAAATCTTTGCATATTCTTTTCATACAGCCTGCGATAAAAATGGATT
TGTATTAGGAGTAAAAGTTGAAGCAGCAAATGTACACGACAGTGTGATGTTTCAAGAAGTATTAGAAGAAGTTGAAAAGAGGGTAAGAAAACCGAAAGCA
ATAGCAGTAGATGCAGGCTATAAAAATCCGTACATATTAAAGACAATATTTGATAGACAAATAATACCAGCAGTACCATACACAAGGCCAAAAACAAAAG
ATGGTTTCATGAAAAAACATGAATTTGTTTATGATGAATACTATGACTGTTACATATGCCCGCAGAATGAAATATTAACATATGTTACAACCAACAGAGA
AGGATATAGAGAATACAAATCAAACCCAGAAAAATGTAAAAACTGTCCTCTAAGAGAAAAGTGTACCCAAAGTAAAGACTACACAAAGAGGATATTCAGG
CACATATGGGAAGGATATGTAGAAGAAGCAGAACACCTAAGGCATACACCTTACTGTAAAGAAGTATATGAGAGAAGGAAAGAGACAATAGAGAGAGTAT
TTGCAGATTTAAAGGAGAAGCATGGTTTGCGATGGACGACGTTAAGAGGGAAGGAAAAATTGTCCATGCAAGCGATGCTTGTTTTTGCTGCCATGAATTT
AAAGAAAATGGCCTTATGGTTATGGAGGAAGGGCAAAGGGCCCTTTGACATTTCAAAACTTTATCCATTATTTGGAGTTTTAAAGAAAATTTTATCCAGA
TATATACAGCCCCTGCTTTCGGTACTAAGAAAACAGGGGCTAAAATTTTGCTTTGTCAACAAACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 491 aa | 19 | 1566 | + | No |
Chemistry : DDE
ORF sequence :
MLSKKEDARHQIEFVSIDQLVPQDHLLRKIEKVIDFSFIYDLVKDKYSEGHGRPSIDPVVLIKILFIQYLFGIPSMRRTIAEIKTNVAYRWFLGYGLTEE
IPHFSTFSQNYIRRFKGTDIFEKIFTKILEEAIKHGLVNAEEVFIDSTHVKASANKKKYTKEIVEQEARTYQEKLEEEINKDREAHGKKPLKKIKKIKTK
EVKVSKTDPDSGMLNKNGKEKIFAYSFHTACDKNGFVLGVKVEAANVHDSVMFQEVLEEVEKRVRKPKAIAVDAGYKNPYILKTIFDRQIIPAVPYTRPK
TKDGFMKKHEFVYDEYYDCYICPQNEILTYVTTNREGYREYKSNPEKCKNCPLREKCTQSKDYTKRIFRHIWEGYVEEAEHLRHTPYCKEVYERRKETIE
RVFADLKEKHGLRWTTLRGKEKLSMQAMLVFAAMNLKKMALWLWRKGKGPFDISKLYPLFGVLKKILSRYIQPLLSVLRKQGLKFCFVNKL
IPHFSTFSQNYIRRFKGTDIFEKIFTKILEEAIKHGLVNAEEVFIDSTHVKASANKKKYTKEIVEQEARTYQEKLEEEINKDREAHGKKPLKKIKKIKTK
EVKVSKTDPDSGMLNKNGKEKIFAYSFHTACDKNGFVLGVKVEAANVHDSVMFQEVLEEVEKRVRKPKAIAVDAGYKNPYILKTIFDRQIIPAVPYTRPK
TKDGFMKKHEFVYDEYYDCYICPQNEILTYVTTNREGYREYKSNPEKCKNCPLREKCTQSKDYTKRIFRHIWEGYVEEAEHLRHTPYCKEVYERRKETIE
RVFADLKEKHGLRWTTLRGKEKLSMQAMLVFAAMNLKKMALWLWRKGKGPFDISKLYPLFGVLKKILSRYIQPLLSVLRKQGLKFCFVNKL
Blast result :
Comments
ISTte1 is 77% aa similar to ISBcl1. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009)
2] Bao,Q., Tian,Y., Li,W., Xu,Z., Xuan,Z., Hu,S., Dong,W., Yang,J., Chen,Y., Xue,Y., Xu,Y., Lai,X., Huang,L., Dong,X., Ma,Y., Ling,L., Tan,H., Chen,R., Wang,J., Yu,J. and Yang,H. (2002) Genome Res. 12 (5), 689-700
2] Bao,Q., Tian,Y., Li,W., Xu,Z., Xuan,Z., Hu,S., Dong,W., Yang,J., Chen,Y., Xue,Y., Xu,Y., Lai,X., Huang,L., Dong,X., Ma,Y., Ling,L., Tan,H., Chen,R., Wang,J., Yu,J. and Yang,H. (2002) Genome Res. 12 (5), 689-700