ISTte1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003869 ND Thermoanaerobacter tengcongensis
Thermoanaerobacter tengcongensis MB4
DNA section
IS Length : 1566 bp

Ends


IR Length : 13/15

IRL : CAGACTGTTGACAAAATATCGGGAACCCGTTATTATGAGAAGGGTTCCTT
IRR : CAGTTTGTTGACAAAGCAAAATTTTAGCCCCTGTTTTCTTAGTACCGAAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGACACTATCAACCTCCTCTTGAGGAGAATAACCTCCTCT0

DNA sequence

CAGACTGTTGACAAAATATCGGGAACCCGTTATTATGAGAAGGGTTCCTTGTTTTTTTAACGGTACAAAGCAAAAGAGGAGAGGAGAAGAAAGATGTTAT
CAAAGAAAGAGGATGCAAGACATCAAATAGAATTTGTAAGCATAGATCAATTAGTACCACAAGACCACCTTTTAAGAAAGATAGAAAAAGTCATAGACTT
TAGCTTCATATACGATTTAGTAAAAGACAAATATTCCGAGGGTCACGGCAGACCAAGCATAGACCCAGTAGTACTCATAAAAATACTTTTCATTCAATAT
CTTTTTGGCATACCATCGATGAGGAGGACAATAGCAGAAATAAAAACAAATGTAGCGTATAGATGGTTTTTAGGGTATGGGCTGACAGAAGAAATACCTC
ATTTTTCAACATTTAGTCAGAACTACATAAGAAGATTCAAAGGGACAGACATATTTGAGAAAATATTTACGAAGATTTTAGAAGAAGCAATAAAACATGG
GCTAGTAAATGCAGAGGAAGTATTCATAGATTCAACCCATGTAAAAGCAAGTGCCAACAAGAAGAAATACACCAAAGAAATAGTAGAACAAGAAGCCAGG
ACTTATCAAGAAAAACTAGAAGAAGAAATAAACAAAGATAGAGAAGCTCATGGCAAAAAGCCATTAAAGAAAATCAAGAAGATAAAGACGAAAGAAGTGA
AAGTAAGCAAAACAGACCCAGATAGCGGAATGTTAAACAAAAACGGAAAAGAAAAAATCTTTGCATATTCTTTTCATACAGCCTGCGATAAAAATGGATT
TGTATTAGGAGTAAAAGTTGAAGCAGCAAATGTACACGACAGTGTGATGTTTCAAGAAGTATTAGAAGAAGTTGAAAAGAGGGTAAGAAAACCGAAAGCA
ATAGCAGTAGATGCAGGCTATAAAAATCCGTACATATTAAAGACAATATTTGATAGACAAATAATACCAGCAGTACCATACACAAGGCCAAAAACAAAAG
ATGGTTTCATGAAAAAACATGAATTTGTTTATGATGAATACTATGACTGTTACATATGCCCGCAGAATGAAATATTAACATATGTTACAACCAACAGAGA
AGGATATAGAGAATACAAATCAAACCCAGAAAAATGTAAAAACTGTCCTCTAAGAGAAAAGTGTACCCAAAGTAAAGACTACACAAAGAGGATATTCAGG
CACATATGGGAAGGATATGTAGAAGAAGCAGAACACCTAAGGCATACACCTTACTGTAAAGAAGTATATGAGAGAAGGAAAGAGACAATAGAGAGAGTAT
TTGCAGATTTAAAGGAGAAGCATGGTTTGCGATGGACGACGTTAAGAGGGAAGGAAAAATTGTCCATGCAAGCGATGCTTGTTTTTGCTGCCATGAATTT
AAAGAAAATGGCCTTATGGTTATGGAGGAAGGGCAAAGGGCCCTTTGACATTTCAAAACTTTATCCATTATTTGGAGTTTTAAAGAAAATTTTATCCAGA
TATATACAGCCCCTGCTTTCGGTACTAAGAAAACAGGGGCTAAAATTTTGCTTTGTCAACAAACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1548 bp491 aa191566+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSKKEDARHQIEFVSIDQLVPQDHLLRKIEKVIDFSFIYDLVKDKYSEGHGRPSIDPVVLIKILFIQYLFGIPSMRRTIAEIKTNVAYRWFLGYGLTEE
IPHFSTFSQNYIRRFKGTDIFEKIFTKILEEAIKHGLVNAEEVFIDSTHVKASANKKKYTKEIVEQEARTYQEKLEEEINKDREAHGKKPLKKIKKIKTK
EVKVSKTDPDSGMLNKNGKEKIFAYSFHTACDKNGFVLGVKVEAANVHDSVMFQEVLEEVEKRVRKPKAIAVDAGYKNPYILKTIFDRQIIPAVPYTRPK
TKDGFMKKHEFVYDEYYDCYICPQNEILTYVTTNREGYREYKSNPEKCKNCPLREKCTQSKDYTKRIFRHIWEGYVEEAEHLRHTPYCKEVYERRKETIE
RVFADLKEKHGLRWTTLRGKEKLSMQAMLVFAAMNLKKMALWLWRKGKGPFDISKLYPLFGVLKKILSRYIQPLLSVLRKQGLKFCFVNKL

 

Blast result :
Comments
ISTte1 is 77% aa similar to ISBcl1. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009)
2] Bao,Q., Tian,Y., Li,W., Xu,Z., Xuan,Z., Hu,S., Dong,W., Yang,J., Chen,Y., Xue,Y., Xu,Y., Lai,X., Huang,L., Dong,X., Ma,Y., Ling,L., Tan,H., Chen,R., Wang,J., Yu,J. and Yang,H. (2002) Genome Res. 12 (5), 689-700