ISMav6

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB447556 ND Mycobacterium avium
Mycobacterium avium subsp. hominissuis
DNA section
IS Length : 1472 bp

Ends


Left end : TTCCTTAGGGGTGAAGGGGTCTGGGATTGGATGTCCTGGATGCCCAGGACGGTGGGGTGTGGCTAATGTGTTGTTGCAACGGTTGTTGCTTGAAAGGAAT
Right end : CTGCTGCGCGACAACAGGACCTGGCAACCCCAGCAACCAACCGCGGCAGCCGCCTGACTCACTCACTAGGCATCCTCACCGCTTGACATGCTCATTGAGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TTCCTTAGGGGTGAAGGGGTCTGGGATTGGATGTCCTGGATGCCCAGGACGGTGGGGTGTGGCTAATGTGTTGTTGCAACGGTTGTTGCTTGAAAGGAAT
GGCCGCCCTGCCGTTTTGGACGGTCCTGGCCACTGATTGAGATCTGACGCGTACTCGATGACGCTGCTCTAAGGACCTGTTGGCGGGGTTGTCCGCGGGG
ACTGCGACGACAGGAGTAGCGGTATGGCCGTACCCGACCGTGTGTGGGTGGGTATCGACGTCGGTAAGTCGACTCATCATGCGTGCGCGATCGATGACAC
CGGAAACGTGGTGTGGTCGAAGAAAATCCCGAACGAACAGGCCGCGATCGAAGACCTGATCGCCCAGGTTGGCCGGATTGCTAACCATGTGGTCTGGGCG
ATCGATTTGACCTCGCCGCCGGCGGCGCTGCTGATCGCCGTACTGCTGAGCGCGAAAGCCACGGTGGTGTATGTGCCGGGCCGCACGGTTAACACGATGA
GTCATGCGTTCCGAGGTGAAGGCAAGACCGACGCCAAAGACGCCCGGGTGATCGCCGAAACCGCTAGGCACCGAAGAGATCTGTCCCCGGTCGTACCCGG
CGAAGACCTGGTTGCCGAATTGCGGTCGCTGACCGCATACCGGTCGGATCTGATGACGGACTGGGTGCGCGGCGTGAACCGGCTGCGCTCGATGCTCACC
GCCATCTTCCCTGCTCTGGAAGCTGCGTTCGACTACTCCACCCGCGCGCCGTTGATCCTGGTATCCGGTATGTGCACTCCGGGTGAAATCCGGTCGGCGA
AAAGAGCTGGCGTGATCAAGCACCTTCGAAAAAACCGGGCATGGCCCAACAGCATCGAAACGATCGCCGACAAGGCCCTCACCGCGGCGGCCGGCCAGAC
AATCACACTTCCCGGCGAAGCCGGAACCGCCGCGCTCATCAAGCAACTCGCAGCACGGCTGCTGGATCTGGATCGCCAGATCAAGGATATCGATAAGCAA
ATCACCAACAAATTTCGTGAGCATCCCAGCGCCGCCATCATCGAGTCGATGCCCGGCATGGGGCCACACCTGGGCGCTGAGTTCCTCGTGATCACCGGCG
GCAACATGGCCGCCTTCACCAACCCCGGCCGACTGGCATCGTTCGCCGGATTGGTACCGGTCCCACGGGATTCCGGCCGCATCACCGGCAATCTGCATCG
GCCCAAGCGCTACAACCGGCGCCTGCGCCGCGTGTTCTACCTCGCGGCCCTCTCCAGCCTCAAGATCGAAGGCCCCTCGCGCGCCTTCTACGACCGCAAA
CGATCCGAGAACCACATCCACACCCAAGCCCTGCTTGCCCTGGCACGCCGCCACGTCGACGTCCTGTGGGCACTGCTGCGCGACAACAGGACCTGGCAAC
CCCAGCAACCAACCGCGGCAGCCGCCTGACTCACTCACTAGGCATCCTCACCGCTTGACATGCTCATTGAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa2241429+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MAVPDRVWVGIDVGKSTHHACAIDDTGNVVWSKKIPNEQAAIEDLIAQVGRIANHVVWAIDLTSPPAALLIAVLLSAKATVVYVPGRTVNTMSHAFRGEG
KTDAKDARVIAETARHRRDLSPVVPGEDLVAELRSLTAYRSDLMTDWVRGVNRLRSMLTAIFPALEAAFDYSTRAPLILVSGMCTPGEIRSAKRAGVIKH
LRKNRAWPNSIETIADKALTAAAGQTITLPGEAGTAALIKQLAARLLDLDRQIKDIDKQITNKFREHPSAAIIESMPGMGPHLGAEFLVITGGNMAAFTN
PGRLASFAGLVPVPRDSGRITGNLHRPKRYNRRLRRVFYLAALSSLKIEGPSRAFYDRKRSENHIHTQALLALARRHVDVLWALLRDNRTWQPQQPTAAA
A

 

Blast result :
Comments
ISMav6 is 94% aa similar to IS901.
References
1] Ichikawa,K., Yagi,T., Moriyama,M., Inagaki,T., Nakagawa,T., Uchiya,K., Nikai,T. and Ogawa,K. (2009)J. Med. Microbiol. In press
2] Ichikawa,K. (2009) Direct submission.