ISMgi4
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009338 | ND | Mycobacterium gilvum | Mycobacterium gilvum PYR-GCK |
DNA section
IS Length : 1772 bp
Ends
IR Length : 15
IRL : GAGACTGCTGAATTATTTCGGCGTGGTGGCGGGGTTTGTGGTTGTGTTCT
IRR : GAGACTGCTGAATTAGTGGTTGTGGGGCGGGGTGCCTCAAAGCGCTCTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCGCGAAGGT | CTAG | GCAGGCTCCG | 4 |
DNA sequence
GAGACTGCTGAATTATTTCGGCGTGGTGGCGGGGTTTGTGGTTGTGTTCTCGAGATGATTGAGGCATGCAGGGCCGTGCCGATGATCAGCGTGAGTTGTT
GGATGCCGAATCGGTTGCCGGGCATCTTCTGAAGTCTGACAGCGTGTTTGCGTTCCTGGCGGCGCACCGATCGCAGTTGTTTCCTGGGGAGATGTTCGCC
GATCTGTTTCCGTCGCGGCGGGGCCGTCCCAGCGTGCCAGCCGAGGTGATGGCCTCGGTGATCACCCTGCAGGCTCTGCACGGGCTCTCGGACAACGAGA
CCGTCGATGCGGTGACCTTCGATCTGCGGTGGAAAGCCGCCTGCGGCTTGCCGATCACCGCCGGGGCCTTTCATTCGACGACGTTGACCTACTGGCGGCG
TCGGCTGGCGGCCTCAGAGCGCCCGAACCGCATCTTCGAGGCGGTCAAAACGGTCGTGGCCGCCACTGGTGCGCTGGCGGGCAAGACCCGCCGTGCCCTG
GACTCCACGATTCTCGACGACGCGGTGGCCACCCAGGACACGGTGACCCAATTGATCGGGGCGATCCGCCGGGTGCGTCGCGAGGTCCCCGGCGCCGGCG
AAGTGGTGGCTACCCAGTGCACCGCCCACGACTACGACGACCCGGGTAAACCGGCTATCGCCTGGGACGATGCCGACGCCCGGGCCGGGTTGGTGGACGC
CCTGGTCAGCGATGCGCACCGCCTGCTCGGGCATTTACCTGAGCAGGGGCTCGCGGCCCGCGCGGCTGAGGCGGTGGCGTTATTGGCGTTGATCGCCGGC
CAGGACGTCGAACCTGTTGAGGATTCTGATGGCACCGACGGACGCTGGCGGATCGCGCAGCGCGTCGCACCGGATCGGGTGATCTCCACCGTCGATCCCG
AGGCCCGTCACGCCCACAAGACGGTGCACCGCCGCCAGGACGGATTCAAAGCCCACATCGCCGTGGAACCCGACACCGGCCTGATCACCGACTGCACCTT
GACCAAGGCCGGCGGCGTCGACACCCATGATGCGGCGGTGGCGCCGCAGCTTCTGGCAGGTGAGACCGCACCGGTGACCGTGCTGGGCGATTCGGCCTAC
GGCACTGGGGACTTCCGCGCTCATCTGAAAAGATCGCGTCATCGTGATCGGATCAAACCCGCGCCCCTGCGCGCTGCTGTGCCCGGCGGGTTCACTATCG
ATAACTTCACCGTTGATCGCAACGCTGGCACTGTGACCTGCCCGGCCGGGGTTTCTCGGCCCCTCAGCGCACGCGGCAACGCCACGTTCGGGACTGCCTG
TCGGGGCGGCGCGCTGCGCACACAGTGCACCACCAGCATCGACGGCAGAAACCTCAAAATCGGACCCCACCACGCGCTCCAACGCAACGCCCACAAGCAG
GCTCGAAAACCACACTGGCTCAACGAATATCGTCGCTACCGACCAATGGTCGAACGAACCATCGCCTGGCTGACCCGAGACAACCGCCAAGTCCGCTACC
GCGGCGTCGCCAGAAACGACCACTGGCTGCACCACCGCGCAGCAGCAATGAACCTACGACGCCTCGTCACCATGGGGATAACCCACAACGGCACCACCTG
GGCACTGACCTGAGACCGACACCCACCACAGGGCTTGCCCTTGCACCCGACCGATGCCACGCTCAATACGGCGGGGTGACCCTCGAATTGTCGACCTCTG
GGTCTGACTTAACCCACGCGCCACAGAGCGCTTTGAGGCACCCCGCCCCACAACCACTAATTCAGCAGTCTC
GGATGCCGAATCGGTTGCCGGGCATCTTCTGAAGTCTGACAGCGTGTTTGCGTTCCTGGCGGCGCACCGATCGCAGTTGTTTCCTGGGGAGATGTTCGCC
GATCTGTTTCCGTCGCGGCGGGGCCGTCCCAGCGTGCCAGCCGAGGTGATGGCCTCGGTGATCACCCTGCAGGCTCTGCACGGGCTCTCGGACAACGAGA
CCGTCGATGCGGTGACCTTCGATCTGCGGTGGAAAGCCGCCTGCGGCTTGCCGATCACCGCCGGGGCCTTTCATTCGACGACGTTGACCTACTGGCGGCG
TCGGCTGGCGGCCTCAGAGCGCCCGAACCGCATCTTCGAGGCGGTCAAAACGGTCGTGGCCGCCACTGGTGCGCTGGCGGGCAAGACCCGCCGTGCCCTG
GACTCCACGATTCTCGACGACGCGGTGGCCACCCAGGACACGGTGACCCAATTGATCGGGGCGATCCGCCGGGTGCGTCGCGAGGTCCCCGGCGCCGGCG
AAGTGGTGGCTACCCAGTGCACCGCCCACGACTACGACGACCCGGGTAAACCGGCTATCGCCTGGGACGATGCCGACGCCCGGGCCGGGTTGGTGGACGC
CCTGGTCAGCGATGCGCACCGCCTGCTCGGGCATTTACCTGAGCAGGGGCTCGCGGCCCGCGCGGCTGAGGCGGTGGCGTTATTGGCGTTGATCGCCGGC
CAGGACGTCGAACCTGTTGAGGATTCTGATGGCACCGACGGACGCTGGCGGATCGCGCAGCGCGTCGCACCGGATCGGGTGATCTCCACCGTCGATCCCG
AGGCCCGTCACGCCCACAAGACGGTGCACCGCCGCCAGGACGGATTCAAAGCCCACATCGCCGTGGAACCCGACACCGGCCTGATCACCGACTGCACCTT
GACCAAGGCCGGCGGCGTCGACACCCATGATGCGGCGGTGGCGCCGCAGCTTCTGGCAGGTGAGACCGCACCGGTGACCGTGCTGGGCGATTCGGCCTAC
GGCACTGGGGACTTCCGCGCTCATCTGAAAAGATCGCGTCATCGTGATCGGATCAAACCCGCGCCCCTGCGCGCTGCTGTGCCCGGCGGGTTCACTATCG
ATAACTTCACCGTTGATCGCAACGCTGGCACTGTGACCTGCCCGGCCGGGGTTTCTCGGCCCCTCAGCGCACGCGGCAACGCCACGTTCGGGACTGCCTG
TCGGGGCGGCGCGCTGCGCACACAGTGCACCACCAGCATCGACGGCAGAAACCTCAAAATCGGACCCCACCACGCGCTCCAACGCAACGCCCACAAGCAG
GCTCGAAAACCACACTGGCTCAACGAATATCGTCGCTACCGACCAATGGTCGAACGAACCATCGCCTGGCTGACCCGAGACAACCGCCAAGTCCGCTACC
GCGGCGTCGCCAGAAACGACCACTGGCTGCACCACCGCGCAGCAGCAATGAACCTACGACGCCTCGTCACCATGGGGATAACCCACAACGGCACCACCTG
GGCACTGACCTGAGACCGACACCCACCACAGGGCTTGCCCTTGCACCCGACCGATGCCACGCTCAATACGGCGGGGTGACCCTCGAATTGTCGACCTCTG
GGTCTGACTTAACCCACGCGCCACAGAGCGCTTTGAGGCACCCCGCCCCACAACCACTAATTCAGCAGTCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1548 bp | 515 aa | 66 | 1613 | + | No |
Chemistry : DDE
ORF sequence :
MQGRADDQRELLDAESVAGHLLKSDSVFAFLAAHRSQLFPGEMFADLFPSRRGRPSVPAEVMASVITLQALHGLSDNETVDAVTFDLRWKAACGLPITAG
AFHSTTLTYWRRRLAASERPNRIFEAVKTVVAATGALAGKTRRALDSTILDDAVATQDTVTQLIGAIRRVRREVPGAGEVVATQCTAHDYDDPGKPAIAW
DDADARAGLVDALVSDAHRLLGHLPEQGLAARAAEAVALLALIAGQDVEPVEDSDGTDGRWRIAQRVAPDRVISTVDPEARHAHKTVHRRQDGFKAHIAV
EPDTGLITDCTLTKAGGVDTHDAAVAPQLLAGETAPVTVLGDSAYGTGDFRAHLKRSRHRDRIKPAPLRAAVPGGFTIDNFTVDRNAGTVTCPAGVSRPL
SARGNATFGTACRGGALRTQCTTSIDGRNLKIGPHHALQRNAHKQARKPHWLNEYRRYRPMVERTIAWLTRDNRQVRYRGVARNDHWLHHRAAAMNLRRL
VTMGITHNGTTWALT
AFHSTTLTYWRRRLAASERPNRIFEAVKTVVAATGALAGKTRRALDSTILDDAVATQDTVTQLIGAIRRVRREVPGAGEVVATQCTAHDYDDPGKPAIAW
DDADARAGLVDALVSDAHRLLGHLPEQGLAARAAEAVALLALIAGQDVEPVEDSDGTDGRWRIAQRVAPDRVISTVDPEARHAHKTVHRRQDGFKAHIAV
EPDTGLITDCTLTKAGGVDTHDAAVAPQLLAGETAPVTVLGDSAYGTGDFRAHLKRSRHRDRIKPAPLRAAVPGGFTIDNFTVDRNAGTVTCPAGVSRPL
SARGNATFGTACRGGALRTQCTTSIDGRNLKIGPHHALQRNAHKQARKPHWLNEYRRYRPMVERTIAWLTRDNRQVRYRGVARNDHWLHHRAAAMNLRRL
VTMGITHNGTTWALT
Blast result :
Comments
ISMgi4 is 81% aa similar to ISMgi2.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and Richardson,P. (2007) Direct submission GenBank.