ISCli1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACHJ01000126 ND Corynebacterium lipophiloflavum
Corynebacterium lipophiloflavum DSM 44291
DNA section
IS Length : 1687 bp

Ends


IR Length : 21/27

IRL : CCTGGATCCACCGATGTGATTTTGGGGTAGCGGCGTGGGAAAAAGAGAAA
IRR : CCTGGATCCGCCGATGGTCTTTCGGTGATCGGTTGATTTCGGCTGCGGGC

Insertion site


Left flankDirect repeatRight flankDR Length
AAGCT0

DNA sequence

CCTGGATCCACCGATGTGATTTTGGGGTAGCGGCGTGGGAAAAAGAGAAATACCCTTCTGAAATGGGATAATACGACTTGCCGAAGGTCTATATTCCCCA
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACTCCCGCGGCACTCTCTATTTCATTCGATGACCCCAACCTCGTGTCGGCCGCCGGCTTGGTCCC
AGCCATGCGCCTGGCCGACACTGCTGGCCTGTCGACCCTGGCACAGCACAGGATGAGTATCGCAGGCGACAAGGGTGCCAACGCCGGGGCGAAGATCTCC
TCACTGGTCGCAGGCATGGTCGCCGGTGCCGACTCGATTGACGACATGGACCTGTTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCGC
CGTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGGCACGTGCGCCAGTTGGATGCCGTGGCCTCCCGCTTCCTGATCAACCTGGCTGACCAGTC
ACCGGGCCTGGTACCCGCACCCCCAGCTGCCACCAGCGGGTATGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGC
GCCGGCTTCGGCTACTCCGGTGTCCGTGGGCTCAATGCTCTGCTGGCGACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCC
GAGGGTCCTGTGGTTCGGCGCGTGGGGCAGGCCGGTTGATTGCCGATGCCATCACCACCACCCGACGCCTACCCGCCATGGCCCAGCAGAAAATCCTCGT
ACGCGCGGACTCCGCTTTCTACGGCCGGCCCAGCATCCACGCAGCACTCACCGCCGGTGCGGATGTGTCCATCACCGCGCGGATGACGCCCGACATCCAG
AACGCGATTGCCACGATCCCGGACACGTCCTGGGAAACAATTGAGTACACCGACGCGCTCTTTGATGAGGACACCCAGACCTGGATCTCCTCAGCGGTAG
TCGCGGAAGTCCCCTTCATCGCGTTTGCGTCGAAGAAGGCAGCTGATCAGGTTCCCGGTCGGCTGGTGGTGCGCCGGATCCCGGAGTTGAACAAGAAGAA
TATCGATCAGCCGGGCCTGTTTGATCTGCACCGCTTCCACGCGGTATTCACCACCGCCGACCCAGACCTGCTGGGTATCGTGGCCGCGGACAAGACCCAC
CGGCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGTGCGCTGGCGCATATGCCTTCAGGTGTGTTCACCGCGAACGCGGCGTGGTTGG
TGGTGGCGGTCATGGCCTTCAACCTCACCAGGGCTGCCGGGACCATCGCGGCCGGGGCACTGGCCAGGGCTACGACTGCGACGATCCGGCGTCGGATCGT
CATGGTGGCGGCCCGCATTGCTCGTAGGGCACGAAGGTTGGTCCTGCACCTACCGCAGGGCTGGAAATGGGAGCCGCAGTGGCGGAAGCTGTTCGAGCAC
GGTCACTCGCCACCGGCTGTTGTTTCTTCCTGACCACCTGAGCCGAAACCCTCCGGCCCGAGCCGACCTACCAATTCGTGGAACAACCAGACGACGACGT
GATCTGGGGATCATTCCTGCCCGAAAATCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAAGACCATCGGCGGATCCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa2051533+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLADTAGLSTLAQHRMSIAGDKGANAGAKISSLVAGMVAGADSIDDMDLLRHGGMNRLFTRIYAPSTLGSFLRAFTFGHVRQLDAVASRFLINLADQSP
GLVPAPPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGVRGLNALLATVTTTESAPVVVAQRLRRGSCGSARGAGRLIADAITTTRRLPAMAQQKILVR
ADSAFYGRPSIHAALTAGADVSITARMTPDIQNAIATIPDTSWETIEYTDALFDEDTQTWISSAVVAEVPFIAFASKKAADQVPGRLVVRRIPELNKKNI
DQPGLFDLHRFHAVFTTADPDLLGIVAADKTHRQHAVIEQVNADLKNSALAHMPSGVFTANAAWLVVAVMAFNLTRAAGTIAAGALARATTATIRRRIVM
VAARIARRARRLVLHLPQGWKWEPQWRKLFEHGHSPPAVVSS

 

Blast result :
Comments
ISCli1 is 93% aa similar to ISCef7.
References
1] ISfinder annotation (2009)
2] Qin, X et al . (2009) Direct submission Genbank.