ISCli1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACHJ01000126 | ND | Corynebacterium lipophiloflavum | Corynebacterium lipophiloflavum DSM 44291 |
DNA section
IS Length : 1687 bp
Ends
IR Length : 21/27
IRL : CCTGGATCCACCGATGTGATTTTGGGGTAGCGGCGTGGGAAAAAGAGAAA
IRR : CCTGGATCCGCCGATGGTCTTTCGGTGATCGGTTGATTTCGGCTGCGGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAG | CT | 0 |
DNA sequence
CCTGGATCCACCGATGTGATTTTGGGGTAGCGGCGTGGGAAAAAGAGAAATACCCTTCTGAAATGGGATAATACGACTTGCCGAAGGTCTATATTCCCCA
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACTCCCGCGGCACTCTCTATTTCATTCGATGACCCCAACCTCGTGTCGGCCGCCGGCTTGGTCCC
AGCCATGCGCCTGGCCGACACTGCTGGCCTGTCGACCCTGGCACAGCACAGGATGAGTATCGCAGGCGACAAGGGTGCCAACGCCGGGGCGAAGATCTCC
TCACTGGTCGCAGGCATGGTCGCCGGTGCCGACTCGATTGACGACATGGACCTGTTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCGC
CGTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGGCACGTGCGCCAGTTGGATGCCGTGGCCTCCCGCTTCCTGATCAACCTGGCTGACCAGTC
ACCGGGCCTGGTACCCGCACCCCCAGCTGCCACCAGCGGGTATGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGC
GCCGGCTTCGGCTACTCCGGTGTCCGTGGGCTCAATGCTCTGCTGGCGACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCC
GAGGGTCCTGTGGTTCGGCGCGTGGGGCAGGCCGGTTGATTGCCGATGCCATCACCACCACCCGACGCCTACCCGCCATGGCCCAGCAGAAAATCCTCGT
ACGCGCGGACTCCGCTTTCTACGGCCGGCCCAGCATCCACGCAGCACTCACCGCCGGTGCGGATGTGTCCATCACCGCGCGGATGACGCCCGACATCCAG
AACGCGATTGCCACGATCCCGGACACGTCCTGGGAAACAATTGAGTACACCGACGCGCTCTTTGATGAGGACACCCAGACCTGGATCTCCTCAGCGGTAG
TCGCGGAAGTCCCCTTCATCGCGTTTGCGTCGAAGAAGGCAGCTGATCAGGTTCCCGGTCGGCTGGTGGTGCGCCGGATCCCGGAGTTGAACAAGAAGAA
TATCGATCAGCCGGGCCTGTTTGATCTGCACCGCTTCCACGCGGTATTCACCACCGCCGACCCAGACCTGCTGGGTATCGTGGCCGCGGACAAGACCCAC
CGGCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGTGCGCTGGCGCATATGCCTTCAGGTGTGTTCACCGCGAACGCGGCGTGGTTGG
TGGTGGCGGTCATGGCCTTCAACCTCACCAGGGCTGCCGGGACCATCGCGGCCGGGGCACTGGCCAGGGCTACGACTGCGACGATCCGGCGTCGGATCGT
CATGGTGGCGGCCCGCATTGCTCGTAGGGCACGAAGGTTGGTCCTGCACCTACCGCAGGGCTGGAAATGGGAGCCGCAGTGGCGGAAGCTGTTCGAGCAC
GGTCACTCGCCACCGGCTGTTGTTTCTTCCTGACCACCTGAGCCGAAACCCTCCGGCCCGAGCCGACCTACCAATTCGTGGAACAACCAGACGACGACGT
GATCTGGGGATCATTCCTGCCCGAAAATCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAAGACCATCGGCGGATCCAGG
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACTCCCGCGGCACTCTCTATTTCATTCGATGACCCCAACCTCGTGTCGGCCGCCGGCTTGGTCCC
AGCCATGCGCCTGGCCGACACTGCTGGCCTGTCGACCCTGGCACAGCACAGGATGAGTATCGCAGGCGACAAGGGTGCCAACGCCGGGGCGAAGATCTCC
TCACTGGTCGCAGGCATGGTCGCCGGTGCCGACTCGATTGACGACATGGACCTGTTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCGC
CGTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGGCACGTGCGCCAGTTGGATGCCGTGGCCTCCCGCTTCCTGATCAACCTGGCTGACCAGTC
ACCGGGCCTGGTACCCGCACCCCCAGCTGCCACCAGCGGGTATGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGC
GCCGGCTTCGGCTACTCCGGTGTCCGTGGGCTCAATGCTCTGCTGGCGACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCC
GAGGGTCCTGTGGTTCGGCGCGTGGGGCAGGCCGGTTGATTGCCGATGCCATCACCACCACCCGACGCCTACCCGCCATGGCCCAGCAGAAAATCCTCGT
ACGCGCGGACTCCGCTTTCTACGGCCGGCCCAGCATCCACGCAGCACTCACCGCCGGTGCGGATGTGTCCATCACCGCGCGGATGACGCCCGACATCCAG
AACGCGATTGCCACGATCCCGGACACGTCCTGGGAAACAATTGAGTACACCGACGCGCTCTTTGATGAGGACACCCAGACCTGGATCTCCTCAGCGGTAG
TCGCGGAAGTCCCCTTCATCGCGTTTGCGTCGAAGAAGGCAGCTGATCAGGTTCCCGGTCGGCTGGTGGTGCGCCGGATCCCGGAGTTGAACAAGAAGAA
TATCGATCAGCCGGGCCTGTTTGATCTGCACCGCTTCCACGCGGTATTCACCACCGCCGACCCAGACCTGCTGGGTATCGTGGCCGCGGACAAGACCCAC
CGGCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGTGCGCTGGCGCATATGCCTTCAGGTGTGTTCACCGCGAACGCGGCGTGGTTGG
TGGTGGCGGTCATGGCCTTCAACCTCACCAGGGCTGCCGGGACCATCGCGGCCGGGGCACTGGCCAGGGCTACGACTGCGACGATCCGGCGTCGGATCGT
CATGGTGGCGGCCCGCATTGCTCGTAGGGCACGAAGGTTGGTCCTGCACCTACCGCAGGGCTGGAAATGGGAGCCGCAGTGGCGGAAGCTGTTCGAGCAC
GGTCACTCGCCACCGGCTGTTGTTTCTTCCTGACCACCTGAGCCGAAACCCTCCGGCCCGAGCCGACCTACCAATTCGTGGAACAACCAGACGACGACGT
GATCTGGGGATCATTCCTGCCCGAAAATCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAAGACCATCGGCGGATCCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 205 | 1533 | + | No |
Chemistry : DDE
ORF sequence :
MRLADTAGLSTLAQHRMSIAGDKGANAGAKISSLVAGMVAGADSIDDMDLLRHGGMNRLFTRIYAPSTLGSFLRAFTFGHVRQLDAVASRFLINLADQSP
GLVPAPPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGVRGLNALLATVTTTESAPVVVAQRLRRGSCGSARGAGRLIADAITTTRRLPAMAQQKILVR
ADSAFYGRPSIHAALTAGADVSITARMTPDIQNAIATIPDTSWETIEYTDALFDEDTQTWISSAVVAEVPFIAFASKKAADQVPGRLVVRRIPELNKKNI
DQPGLFDLHRFHAVFTTADPDLLGIVAADKTHRQHAVIEQVNADLKNSALAHMPSGVFTANAAWLVVAVMAFNLTRAAGTIAAGALARATTATIRRRIVM
VAARIARRARRLVLHLPQGWKWEPQWRKLFEHGHSPPAVVSS
GLVPAPPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGVRGLNALLATVTTTESAPVVVAQRLRRGSCGSARGAGRLIADAITTTRRLPAMAQQKILVR
ADSAFYGRPSIHAALTAGADVSITARMTPDIQNAIATIPDTSWETIEYTDALFDEDTQTWISSAVVAEVPFIAFASKKAADQVPGRLVVRRIPELNKKNI
DQPGLFDLHRFHAVFTTADPDLLGIVAADKTHRQHAVIEQVNADLKNSALAHMPSGVFTANAAWLVVAVMAFNLTRAAGTIAAGALARATTATIRRRIVM
VAARIARRARRLVLHLPQGWKWEPQWRKLFEHGHSPPAVVSS
Blast result :
Comments
ISCli1 is 93% aa similar to ISCef7.
References
1] ISfinder annotation (2009)
2] Qin, X et al . (2009) Direct submission Genbank.
2] Qin, X et al . (2009) Direct submission Genbank.