ISDpr6
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAQF01000024 | ND | delta proteobacterium | delta proteobacterium MLMS-1 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 12/17
IRL : CCTAACTCCGTGAAAAAAATGCAATAAAAATCAGGCCATATCACAGTTAA
IRR : CCTGAATCAGTGAGTAACCCTGTTCTCCCCCATTAGCGGGAGCACTATTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCTCGCGAC | GACGTT | GACTAAAAAA | 6 |
DNA sequence
CCTAACTCCGTGAAAAAAATGCAATAAAAATCAGGCCATATCACAGTTAACATATTGATTTTTGTGCAAAAATAGTGCAATATACACCTGTCTGAAAAAC
TCACTCAGCGGGTGCAAAAATGAAAAAGTTCATCATCGAAAGGTCCGAGGACGAATTTTACACCTCCCTTTCCGGGCTGGCCCTGGTTGACCTGGGGGTC
AATCGCTTCACCAGCCTGGGCGGGAAGCTGAAGAGAGCCATGACGGACAAGACCATCAGCAACATCGACGTTCTTCGCAGCTATATCGGGTTGCTTGCCA
TGGGCAAAAGCGATTTCGAGGCCATCACCGACCTGCGGGACGATCATTTCTTCCATGAGTCGATGGGCTTGAAAAGCATCCCCTCAACCGAGACTTTGCG
CCAGCGGCTGGACGAGATTGCGCTGATTGCTCGGCCCATCGTCTCCGCAACCTATACCGAGTTTATCAAGCGTTCCAAGGGGCGGGTAACTCCCCTGGCC
ACCGGTCACGTGCCTTTGGATTTCGATGTTTTCTGTATGGACAACTCCGGCACCAAAAAAGAGGGGGTGGCCTACACCTACCATGGCTATCACGGCTACG
CCCCGATCGCCGCCTACCTGGGCGAGGAAGGCTGGTGCCTCAACCTGGAGTTCCGGGAGGGCAGCCAGCACAGCCAGAACAACTTCATTCCTTTCCTGCA
GGAGTCCCTGGCCAGAGCCGGCGAATTGACCAAAAAACCGCTGCTGCTCAGACTTGATTCCGCTCACGATGCCGTCGAAACTCGAGCACTGGTTGCTGGA
CGTAAGAAAGTCGATTACATCCTGAAATGGAACCCGCGCCAGCATAACCGCCAAGCCCTGCTCAAACGGGGCTTGCGGGAAGGCAAAGTCAGCACCCCCA
GGGAAGGAAAGCGGATGGCCATTTTCAGCTACAACCAGCTTGAAGAGCACGGGGAGCAAAAGTTCAGCAGCCGCTTGGTGGTCCGGGTAACGGAGCGCGC
CATCGACCGTTGCGGTCAACGGCTGCTGACGCCGGAAATCACGGTTGAAGGCTGGTGGACCTCGCTTTATCGGCCGGAAGAGGAGATCATCAAGCTCTAC
AACGACCACGGCACCAGCGAACAGTCTCACAGTGAGTTCAAGACCGATATGGATCTGGAACGGCTGCCGTCCGGTAAATTCGATACCAATGCTCTGGTTA
TGGCTCTTGCCGGCCTGACTTACAATATTCTGCGTTTTATCGGCCAGCTCGGCCTGCTGGGAAACCAATCACCGGTTCGCCATGCCGCCAAGCGCCGTCG
GATCAGGACGGTCATCCAGGAGCTGATCTATCGCGCCGCGAGGCTGATTGCCAGCGGACGCCGGTTGAAGCTGAGATTCAGCCACCATTGCCAAAGCTTT
GGCGCGTTTCGGGAGGTTTATGGCCGCCTTGCCGCCGGATAGCCGATCTCGGCGACCGCGGACTCAACATGGTGTCCCCGGCCCGGTGGGACAGGTACGC
CGTTTTTTAGCCGAAATGGGCTGTTTTTTCAAAGAACGGGCGAAAAGATCGCCGATACCGCCACAGTTTTGTGTTATGCCGGGGTTGGCAACGGCACTTT
TTTAAAAATAGTGCTCCCGCTAATGGGGGAGAACAGGGTTACTCACTGATTCAGG
TCACTCAGCGGGTGCAAAAATGAAAAAGTTCATCATCGAAAGGTCCGAGGACGAATTTTACACCTCCCTTTCCGGGCTGGCCCTGGTTGACCTGGGGGTC
AATCGCTTCACCAGCCTGGGCGGGAAGCTGAAGAGAGCCATGACGGACAAGACCATCAGCAACATCGACGTTCTTCGCAGCTATATCGGGTTGCTTGCCA
TGGGCAAAAGCGATTTCGAGGCCATCACCGACCTGCGGGACGATCATTTCTTCCATGAGTCGATGGGCTTGAAAAGCATCCCCTCAACCGAGACTTTGCG
CCAGCGGCTGGACGAGATTGCGCTGATTGCTCGGCCCATCGTCTCCGCAACCTATACCGAGTTTATCAAGCGTTCCAAGGGGCGGGTAACTCCCCTGGCC
ACCGGTCACGTGCCTTTGGATTTCGATGTTTTCTGTATGGACAACTCCGGCACCAAAAAAGAGGGGGTGGCCTACACCTACCATGGCTATCACGGCTACG
CCCCGATCGCCGCCTACCTGGGCGAGGAAGGCTGGTGCCTCAACCTGGAGTTCCGGGAGGGCAGCCAGCACAGCCAGAACAACTTCATTCCTTTCCTGCA
GGAGTCCCTGGCCAGAGCCGGCGAATTGACCAAAAAACCGCTGCTGCTCAGACTTGATTCCGCTCACGATGCCGTCGAAACTCGAGCACTGGTTGCTGGA
CGTAAGAAAGTCGATTACATCCTGAAATGGAACCCGCGCCAGCATAACCGCCAAGCCCTGCTCAAACGGGGCTTGCGGGAAGGCAAAGTCAGCACCCCCA
GGGAAGGAAAGCGGATGGCCATTTTCAGCTACAACCAGCTTGAAGAGCACGGGGAGCAAAAGTTCAGCAGCCGCTTGGTGGTCCGGGTAACGGAGCGCGC
CATCGACCGTTGCGGTCAACGGCTGCTGACGCCGGAAATCACGGTTGAAGGCTGGTGGACCTCGCTTTATCGGCCGGAAGAGGAGATCATCAAGCTCTAC
AACGACCACGGCACCAGCGAACAGTCTCACAGTGAGTTCAAGACCGATATGGATCTGGAACGGCTGCCGTCCGGTAAATTCGATACCAATGCTCTGGTTA
TGGCTCTTGCCGGCCTGACTTACAATATTCTGCGTTTTATCGGCCAGCTCGGCCTGCTGGGAAACCAATCACCGGTTCGCCATGCCGCCAAGCGCCGTCG
GATCAGGACGGTCATCCAGGAGCTGATCTATCGCGCCGCGAGGCTGATTGCCAGCGGACGCCGGTTGAAGCTGAGATTCAGCCACCATTGCCAAAGCTTT
GGCGCGTTTCGGGAGGTTTATGGCCGCCTTGCCGCCGGATAGCCGATCTCGGCGACCGCGGACTCAACATGGTGTCCCCGGCCCGGTGGGACAGGTACGC
CGTTTTTTAGCCGAAATGGGCTGTTTTTTCAAAGAACGGGCGAAAAGATCGCCGATACCGCCACAGTTTTGTGTTATGCCGGGGTTGGCAACGGCACTTT
TTTAAAAATAGTGCTCCCGCTAATGGGGGAGAACAGGGTTACTCACTGATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1323 bp | 440 aa | 120 | 1442 | + | No |
Chemistry : DDE
ORF sequence :
MKKFIIERSEDEFYTSLSGLALVDLGVNRFTSLGGKLKRAMTDKTISNIDVLRSYIGLLAMGKSDFEAITDLRDDHFFHESMGLKSIPSTETLRQRLDEI
ALIARPIVSATYTEFIKRSKGRVTPLATGHVPLDFDVFCMDNSGTKKEGVAYTYHGYHGYAPIAAYLGEEGWCLNLEFREGSQHSQNNFIPFLQESLARA
GELTKKPLLLRLDSAHDAVETRALVAGRKKVDYILKWNPRQHNRQALLKRGLREGKVSTPREGKRMAIFSYNQLEEHGEQKFSSRLVVRVTERAIDRCGQ
RLLTPEITVEGWWTSLYRPEEEIIKLYNDHGTSEQSHSEFKTDMDLERLPSGKFDTNALVMALAGLTYNILRFIGQLGLLGNQSPVRHAAKRRRIRTVIQ
ELIYRAARLIASGRRLKLRFSHHCQSFGAFREVYGRLAAG
ALIARPIVSATYTEFIKRSKGRVTPLATGHVPLDFDVFCMDNSGTKKEGVAYTYHGYHGYAPIAAYLGEEGWCLNLEFREGSQHSQNNFIPFLQESLARA
GELTKKPLLLRLDSAHDAVETRALVAGRKKVDYILKWNPRQHNRQALLKRGLREGKVSTPREGKRMAIFSYNQLEEHGEQKFSSRLVVRVTERAIDRCGQ
RLLTPEITVEGWWTSLYRPEEEIIKLYNDHGTSEQSHSEFKTDMDLERLPSGKFDTNALVMALAGLTYNILRFIGQLGLLGNQSPVRHAAKRRRIRTVIQ
ELIYRAARLIASGRRLKLRFSHHCQSFGAFREVYGRLAAG
Blast result :
Comments
ISDpr6 is 96% aa similar to ISDpr5.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.