ISPph4
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011060 | ND | Pelodictyon phaeoclathratiforme | Pelodictyon phaeoclathratiforme BU-1 |
DNA section
IS Length : 1763 bp
Ends
IR Length : 11/13
IRL : CCTGAATTATTCACCATAAACAAAAAAAAGGGGGGCAAAAAATACCGCAA
IRR : CCTGTATAATTCATGAGGTCTACCAAAACAGAAGTTTTGAGTAAAAAAAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTATTGCTAT | CTAA | AAGGGAAAAA | 4 |
DNA sequence
CCTGAATTATTCACCATAAACAAAAAAAAGGGGGGCAAAAAATACCGCAATTACTTATATTATTGGTGCTTAAGTCAATAAATAAGACGCGATATTTATG
CAACCCCTTCAGCCGAATATAGTCACATCAGAGAGTACTCAACAAACATTATTTTCATACAATTCGGCATCAGCCATTGCCCCGGTAATGGGTAAAAAGT
TGCTCTGGATTTTGATGGCGGCAACATCACAAGCGACGCTGGTGTGTTGCTCTTGCATGAAACCGAATCCCAACTTGGCATCATCAGCATGCTGACCAAG
TGCATCAGTGATAGCCGACGTTCTTCTTCGATTACGCATAGTGTCAATGAACTCAATACCCTGCGAGTATTTCAAATCGCCTGTGGTTACGAAGATTGCA
ATGACAGCAACAGTTTACGCATTGATCCGGCAATGAAAATAGCTCTTGGTCGTTTACCTGAGACCGGCCTTGATTTAGCCAGTCAACCAACGTTCAGCAG
GTTGGAAAACATGATTACCCGTCGAGATCTCTATCGAATTGCAGATGGTATTGTGGATCATTTTCTCGCTTCGTATGTCGAACCTCCCGAGGTCATTGTC
CTGGATTTTGACGATACGGAGGATGTTGTGCACGGCCATCAGCAATTGGCTCTGTTCAGCGGTTATTATCAGGAGACCTGTTATCAGCCTCTGCATGTGT
ATGAAGGTTTTTCTGGCAAACTGATCACCACGATACTGCGGCCAGGCAAGCGCCCGGGAAGCCGGGAGATCGTCTCCTACGTGAAACGGATTGTGGAACG
TATTCGCCAAAAATGGCCAGACACCATACTGGTTTACCGTGGTGACAGTCATTATTCAGCACCAGAAGTCTTTGCATTCATTGACCAACAAAATGATTGC
TACAGCGTGACCGGACTGACCCGTAACGCACTTTTGCTCAAGCATGTAGAAACCCTGATCAAACACGTCAAGCAGCAACCAGCAGGCTTCAAACGCTATC
ACTCTTTCATGTACAAGGCAGAAAGCTGGAGCAAGCCACGTAAAGTTGTTGCAAAGGTAGAGATGACCGACATTGGAAAGTTGAACGTCCGTTTTATCAG
CACGGACATGCCGGAAGCAAAGGCAAAAGCACTCTACGAAGAGATCTACTGTGCTCGTGGAAATGATGAATTGTGCATAAAGGATCACAAAACCTACACC
AAGAGCGATCGAACCTCTTGTCACCGTTTTTTGGCCAATCAGTTTCGGCTGTTTTTGCACTCAGCAGCTTATGTTTTGCTGCACAGTTTCCGATCCAACA
TGCTCAAGGGAACCAGCATGGCTACGGCTACCTTTGAGAGTATTCGCTTGAAAATCTTGAAAATAGGCGCAAGAGTCATTGAACGGAAAACAAAAATTAG
TGTGCAGTTGCCTACGGCATATCCGTACCAGTCGATTTTCTCAAAATGTCTGGCAATCTTTGAACATTTGCGTCGTCAGCCTTGGCCACCACCAACGATA
TCGTAAAGCGACAATTGGCAAAAGAATAAACACTCATACATTTTACACCATTGCAGCAAAACTCACTTGCCATATGGGGCGGGTACGATCACTGTGGAAT
ATCGCCTGTTTTTTCAGACCGTTCAGAGCTATTTTCGTTGGTTATGAACTCCTTCAATTGACTTCATTTGTGATAACGAAATTTTTTACCTGGCCACAAC
GATGAGTAGCTCCATTTTTTTACTCAAAACTTCTGTTTTGGTAGACCTCATGAATTATACAGG
CAACCCCTTCAGCCGAATATAGTCACATCAGAGAGTACTCAACAAACATTATTTTCATACAATTCGGCATCAGCCATTGCCCCGGTAATGGGTAAAAAGT
TGCTCTGGATTTTGATGGCGGCAACATCACAAGCGACGCTGGTGTGTTGCTCTTGCATGAAACCGAATCCCAACTTGGCATCATCAGCATGCTGACCAAG
TGCATCAGTGATAGCCGACGTTCTTCTTCGATTACGCATAGTGTCAATGAACTCAATACCCTGCGAGTATTTCAAATCGCCTGTGGTTACGAAGATTGCA
ATGACAGCAACAGTTTACGCATTGATCCGGCAATGAAAATAGCTCTTGGTCGTTTACCTGAGACCGGCCTTGATTTAGCCAGTCAACCAACGTTCAGCAG
GTTGGAAAACATGATTACCCGTCGAGATCTCTATCGAATTGCAGATGGTATTGTGGATCATTTTCTCGCTTCGTATGTCGAACCTCCCGAGGTCATTGTC
CTGGATTTTGACGATACGGAGGATGTTGTGCACGGCCATCAGCAATTGGCTCTGTTCAGCGGTTATTATCAGGAGACCTGTTATCAGCCTCTGCATGTGT
ATGAAGGTTTTTCTGGCAAACTGATCACCACGATACTGCGGCCAGGCAAGCGCCCGGGAAGCCGGGAGATCGTCTCCTACGTGAAACGGATTGTGGAACG
TATTCGCCAAAAATGGCCAGACACCATACTGGTTTACCGTGGTGACAGTCATTATTCAGCACCAGAAGTCTTTGCATTCATTGACCAACAAAATGATTGC
TACAGCGTGACCGGACTGACCCGTAACGCACTTTTGCTCAAGCATGTAGAAACCCTGATCAAACACGTCAAGCAGCAACCAGCAGGCTTCAAACGCTATC
ACTCTTTCATGTACAAGGCAGAAAGCTGGAGCAAGCCACGTAAAGTTGTTGCAAAGGTAGAGATGACCGACATTGGAAAGTTGAACGTCCGTTTTATCAG
CACGGACATGCCGGAAGCAAAGGCAAAAGCACTCTACGAAGAGATCTACTGTGCTCGTGGAAATGATGAATTGTGCATAAAGGATCACAAAACCTACACC
AAGAGCGATCGAACCTCTTGTCACCGTTTTTTGGCCAATCAGTTTCGGCTGTTTTTGCACTCAGCAGCTTATGTTTTGCTGCACAGTTTCCGATCCAACA
TGCTCAAGGGAACCAGCATGGCTACGGCTACCTTTGAGAGTATTCGCTTGAAAATCTTGAAAATAGGCGCAAGAGTCATTGAACGGAAAACAAAAATTAG
TGTGCAGTTGCCTACGGCATATCCGTACCAGTCGATTTTCTCAAAATGTCTGGCAATCTTTGAACATTTGCGTCGTCAGCCTTGGCCACCACCAACGATA
TCGTAAAGCGACAATTGGCAAAAGAATAAACACTCATACATTTTACACCATTGCAGCAAAACTCACTTGCCATATGGGGCGGGTACGATCACTGTGGAAT
ATCGCCTGTTTTTTCAGACCGTTCAGAGCTATTTTCGTTGGTTATGAACTCCTTCAATTGACTTCATTTGTGATAACGAAATTTTTTACCTGGCCACAAC
GATGAGTAGCTCCATTTTTTTACTCAAAACTTCTGTTTTGGTAGACCTCATGAATTATACAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1263 bp | 420 aa | 244 | 1506 | + | No |
Chemistry : DDE
ORF sequence :
MLLLHETESQLGIISMLTKCISDSRRSSSITHSVNELNTLRVFQIACGYEDCNDSNSLRIDPAMKIALGRLPETGLDLASQPTFSRLENMITRRDLYRIA
DGIVDHFLASYVEPPEVIVLDFDDTEDVVHGHQQLALFSGYYQETCYQPLHVYEGFSGKLITTILRPGKRPGSREIVSYVKRIVERIRQKWPDTILVYRG
DSHYSAPEVFAFIDQQNDCYSVTGLTRNALLLKHVETLIKHVKQQPAGFKRYHSFMYKAESWSKPRKVVAKVEMTDIGKLNVRFISTDMPEAKAKALYEE
IYCARGNDELCIKDHKTYTKSDRTSCHRFLANQFRLFLHSAAYVLLHSFRSNMLKGTSMATATFESIRLKILKIGARVIERKTKISVQLPTAYPYQSIFS
KCLAIFEHLRRQPWPPPTIS
DGIVDHFLASYVEPPEVIVLDFDDTEDVVHGHQQLALFSGYYQETCYQPLHVYEGFSGKLITTILRPGKRPGSREIVSYVKRIVERIRQKWPDTILVYRG
DSHYSAPEVFAFIDQQNDCYSVTGLTRNALLLKHVETLIKHVKQQPAGFKRYHSFMYKAESWSKPRKVVAKVEMTDIGKLNVRFISTDMPEAKAKALYEE
IYCARGNDELCIKDHKTYTKSDRTSCHRFLANQFRLFLHSAAYVLLHSFRSNMLKGTSMATATFESIRLKILKIGARVIERKTKISVQLPTAYPYQSIFS
KCLAIFEHLRRQPWPPPTIS
Blast result :
Comments
ISPph4 is 83% aa similar to ISCph6.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liu,Z., Li,T., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liu,Z., Li,T., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.