ISCph9
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008639 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides DSM 266 |
DNA section
IS Length : 1741 bp
Ends
IR Length : 12/15
IRL : CCTGACCTGAGCGATTCTGTATAAAAAAAGCCCTCACCTATGGGCGTAAA
IRR : CCTAAATTGAGCGATAGCCATCTGGCAGGCGACCTCAGCCGATAAAAAAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CACTGTTCAA | GTGCGCCGGG | 0 |
DNA sequence
CCTGACCTGAGCGATTCTGTATAAAAAAAGCCCTCACCTATGGGCGTAAAGTGTTATATTGTAATGGGTAACGACGAAATTACCAGTACAAAACACACAA
CCCAATAGGTAGAGAGCTTCATGAGCAAAAATAAAAGGATTCGGCAGAATAAGAAACAGCATATTCAGGAAATTCTTCCAACAAATGACAAGTTGACCGG
CAGGGCTGGCTTGAGCCTGTTTGCCCTGTATCTGCGCAATATCCAATTTTTTCCGATCGTTGATCGCATGTTTGGCAGCATGCGCAAGAACAGCAAGGGA
TTGCCGATCACCGAACTGTTCGTTCAAATGCTGAGCTTTTTCATGGATGGAACGAGTCGTCATCTGGTCTGGTTCGACCAGCTTAAGGCTGATGAGAGTT
ATTCGGCTGTCCTTGGTTCCGAACGATTGGCTTCATCGCATACCATGAAACGGTTCTTTGGTGCATTTTCCTTTCGGCGAGTCTACCTGTTCAGGAAGTT
GTTGCAGGATCTGTTCATCTGGCGGCTGAACCAAACAAAACCCAAGGTTATTGTGCTTGGCCTCGATACGACGGTCTTCGACAACAATGATGCCGAAAAA
CGTCACGGCGTTGAACCCACGTATAAAAAGGTCAAAGGGTTCCAGCCCCTGCAACTGAATTGGGGCCGTTATGTGGTAGACGCGGTGTTCCGTGGCGGCA
AGAAGCACTCCAATCATGGCGATACGGCCGAAAAGATGCTGCGGCATATGGTAGGGAAAATCCGGACAGCATACCGGGAAGATGTTCTCATCATTGTGCG
TATGGACGCAGGGTTTTACGACGACCAGATCTTCAACGTCTGTGAAGAACTGGAGATCGGGTATCTGTGTGGCGGTAAACAATATGCCAACGTAATCGAT
GAAGCATCAGAGAGCATTGATTGGCAAGCCTACAAGAAAGTAACTGATGAACGGACAAGCTGGATGTATACGGATTTCATGTGCAAACAGAAGACGTGGA
AGAAAGAACGGCGGACAATCTTCAGCACACTTTGGGAAGACAACGGGCAGTACTTACTCGACGGGTTATGTCGGGATACGGTGATCATTACCAACATTGG
CAAGGGAGAACCAATCGACAAGCAGCTCAGCGCCATCGAAGAAGAGCAGTGGTTCAAAGCCGAAACGATTCTGGCCCGTTATCACGATCGGGGAACGGAT
GAACTCACTAACCGGGCACTGAAAACCTTTGGTCATGAACAATTGCCCTTCAAACGATTTCCGGCAAACGCAGCATGGTACTATCTGATGCTGCTGGGCA
ACAACCTCTTTGAATCCTTCAAGGAAGACGTGACAGCATCCGTTATATCGGTGTCGGTCTATGCTCATACCTTTCGTCGACAGTTCATCGATACCGCCGC
TCAGATCGTTTGTCATTCAGAAAAGGTGCAGATAAAAGTCCCGAGAGCAGCTTATGAGCGGCTCCAATTCGGTAAGCTCTTTGAGATATGCCGGAATCGC
TTGCCACAACTCTGTTAGCCAGTTCGATTGAGCATGAACTGAACAAAAAAGACGGGATCAGTGCGTCCAATCGATTGCGCTGTCAGTGGTTATGGTGTAC
TATTGTCTGACGGAAGGCGTTAGGTGAGCGGTATTGCGTGCAAAGACATGGTCAAAAGGTTAAAACGGTAACTCAGCAGGAGCTGTCGGCAGTTTTTTAT
CGGCTGAGGTCGCCTGCCAGATGGCTATCGCTCAATTTAGG
CCCAATAGGTAGAGAGCTTCATGAGCAAAAATAAAAGGATTCGGCAGAATAAGAAACAGCATATTCAGGAAATTCTTCCAACAAATGACAAGTTGACCGG
CAGGGCTGGCTTGAGCCTGTTTGCCCTGTATCTGCGCAATATCCAATTTTTTCCGATCGTTGATCGCATGTTTGGCAGCATGCGCAAGAACAGCAAGGGA
TTGCCGATCACCGAACTGTTCGTTCAAATGCTGAGCTTTTTCATGGATGGAACGAGTCGTCATCTGGTCTGGTTCGACCAGCTTAAGGCTGATGAGAGTT
ATTCGGCTGTCCTTGGTTCCGAACGATTGGCTTCATCGCATACCATGAAACGGTTCTTTGGTGCATTTTCCTTTCGGCGAGTCTACCTGTTCAGGAAGTT
GTTGCAGGATCTGTTCATCTGGCGGCTGAACCAAACAAAACCCAAGGTTATTGTGCTTGGCCTCGATACGACGGTCTTCGACAACAATGATGCCGAAAAA
CGTCACGGCGTTGAACCCACGTATAAAAAGGTCAAAGGGTTCCAGCCCCTGCAACTGAATTGGGGCCGTTATGTGGTAGACGCGGTGTTCCGTGGCGGCA
AGAAGCACTCCAATCATGGCGATACGGCCGAAAAGATGCTGCGGCATATGGTAGGGAAAATCCGGACAGCATACCGGGAAGATGTTCTCATCATTGTGCG
TATGGACGCAGGGTTTTACGACGACCAGATCTTCAACGTCTGTGAAGAACTGGAGATCGGGTATCTGTGTGGCGGTAAACAATATGCCAACGTAATCGAT
GAAGCATCAGAGAGCATTGATTGGCAAGCCTACAAGAAAGTAACTGATGAACGGACAAGCTGGATGTATACGGATTTCATGTGCAAACAGAAGACGTGGA
AGAAAGAACGGCGGACAATCTTCAGCACACTTTGGGAAGACAACGGGCAGTACTTACTCGACGGGTTATGTCGGGATACGGTGATCATTACCAACATTGG
CAAGGGAGAACCAATCGACAAGCAGCTCAGCGCCATCGAAGAAGAGCAGTGGTTCAAAGCCGAAACGATTCTGGCCCGTTATCACGATCGGGGAACGGAT
GAACTCACTAACCGGGCACTGAAAACCTTTGGTCATGAACAATTGCCCTTCAAACGATTTCCGGCAAACGCAGCATGGTACTATCTGATGCTGCTGGGCA
ACAACCTCTTTGAATCCTTCAAGGAAGACGTGACAGCATCCGTTATATCGGTGTCGGTCTATGCTCATACCTTTCGTCGACAGTTCATCGATACCGCCGC
TCAGATCGTTTGTCATTCAGAAAAGGTGCAGATAAAAGTCCCGAGAGCAGCTTATGAGCGGCTCCAATTCGGTAAGCTCTTTGAGATATGCCGGAATCGC
TTGCCACAACTCTGTTAGCCAGTTCGATTGAGCATGAACTGAACAAAAAAGACGGGATCAGTGCGTCCAATCGATTGCGCTGTCAGTGGTTATGGTGTAC
TATTGTCTGACGGAAGGCGTTAGGTGAGCGGTATTGCGTGCAAAGACATGGTCAAAAGGTTAAAACGGTAACTCAGCAGGAGCTGTCGGCAGTTTTTTAT
CGGCTGAGGTCGCCTGCCAGATGGCTATCGCTCAATTTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1398 bp | 465 aa | 121 | 1518 | + | No |
Chemistry : DDE
ORF sequence :
MSKNKRIRQNKKQHIQEILPTNDKLTGRAGLSLFALYLRNIQFFPIVDRMFGSMRKNSKGLPITELFVQMLSFFMDGTSRHLVWFDQLKADESYSAVLGS
ERLASSHTMKRFFGAFSFRRVYLFRKLLQDLFIWRLNQTKPKVIVLGLDTTVFDNNDAEKRHGVEPTYKKVKGFQPLQLNWGRYVVDAVFRGGKKHSNHG
DTAEKMLRHMVGKIRTAYREDVLIIVRMDAGFYDDQIFNVCEELEIGYLCGGKQYANVIDEASESIDWQAYKKVTDERTSWMYTDFMCKQKTWKKERRTI
FSTLWEDNGQYLLDGLCRDTVIITNIGKGEPIDKQLSAIEEEQWFKAETILARYHDRGTDELTNRALKTFGHEQLPFKRFPANAAWYYLMLLGNNLFESF
KEDVTASVISVSVYAHTFRRQFIDTAAQIVCHSEKVQIKVPRAAYERLQFGKLFEICRNRLPQLC
ERLASSHTMKRFFGAFSFRRVYLFRKLLQDLFIWRLNQTKPKVIVLGLDTTVFDNNDAEKRHGVEPTYKKVKGFQPLQLNWGRYVVDAVFRGGKKHSNHG
DTAEKMLRHMVGKIRTAYREDVLIIVRMDAGFYDDQIFNVCEELEIGYLCGGKQYANVIDEASESIDWQAYKKVTDERTSWMYTDFMCKQKTWKKERRTI
FSTLWEDNGQYLLDGLCRDTVIITNIGKGEPIDKQLSAIEEEQWFKAETILARYHDRGTDELTNRALKTFGHEQLPFKRFPANAAWYYLMLLGNNLFESF
KEDVTASVISVSVYAHTFRRQFIDTAAQIVCHSEKVQIKVPRAAYERLQFGKLFEICRNRLPQLC
Blast result :
Comments
ISCph9 is 85% aa similar to ISPelu1.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Bryant,D.A. and Richardson,P. (2006) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Bryant,D.A. and Richardson,P. (2006) Direct submission.