ISCph8
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010831 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides BS1 |
DNA section
IS Length : 1755 bp
Ends
IR Length : 14/18
IRL : CCTAAGTTGATCGATTTGCAATAAAAAAAGCCCTCACCTATGGGTGTAAA
IRR : CCTGAATTGAGCGATTAGTATCTGACCAGCAGCATCAGCCGGTGAAAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGGATTCAG | TAAGA | ATAACAGCTG | 5 |
DNA sequence
CCTAAGTTGATCGATTTGCAATAAAAAAAGCCCTCACCTATGGGTGTAAAGTGTTATATTAGCGTGAGTAACGACCAAGTCACCACGTAATAAAACACAA
CCCAGCAGGTGGAGAGCTTTATGGCAAAAGATAAGACGATTAAGGGTAAAAAAGAACAGCAGATTTGCGCCATTTTGCCGAGCGACGACCAACTGACCGG
CAGGGCTGGCTTGAGCGTCTTCGCACTGTACCTGCGCAACATAGGGCTGTTTCCGAATTATGACCGCCTGTTCGGTAAAGTGCGGAAGAATGGCAAGCGC
CTGGCGGTCACCGAGATGTTCGTGCAGATTTTGAGCTTCTTCATGGATGGTACGAGCCGCCATCTGAACTGGTTCGATCATCTTGCCGCTGATGATGCCT
ATGCCGGCCTGCTCGGAACCGGTCGATTGGCCTCGTCGCATGCCGTCAAGCGTTTTATCGGGGCTATCTCCTTCTGTCGGATTTACCTGTTCCGGAGATT
GCTGCAGGATGTGTTTCTCTGGCGCCTGAAGCACACCAGGCCGGAAGTGATCATGCTCGGCATTGATACGACGGTTCTGGACAATGACGATGCCGAGAAG
CGCCATGGGGTGCAACCCACATACAAGAAGGTCAAAGGGTTCCAGCCCTTGCAGATGAACTGGGGCAGGTATGTGGTGGACGCGGTGTTCCGTGGAGGAA
AGAAACACTCGAACCACGGCAATACGGTCAATGAGATGCTGGTGCATATGGTAAGGAAAATCCGGAACGCTTACAGGGAAGAGGTTCCGATCATTGTGCG
CATGGACGCCGGGTTCTTCGACGACGAAGTATTCAAGACCTGTGAGCAACTGCAAATCGGTTATCTGTGCGGCGGCAAGCAGTACAGCAATGTTCTTGAT
GAGGTTGCCGATGCGGTCGACTGGCAATCGTTCAAAAAAGTCGAAACTGACTCAAAAAGCTGGATGTACACCGAATTCATGAGCAGACAAAAGAAATGGA
AGAAAGAGCGCCGGACGATCTTCAGTACGCTCTGGGAAGAGGACGGGCAGTATCTGCTGCAAGGCATATGTCGTGATTCCGTCATCATCACCAATATGGG
CATGGGTGAAAAAGAATCGATGAGCAACTTGCCAAGATCGGCCGCGAGGACTTGCTCGACGCCGGAAAGCTTCTTGGCCTCTACCACGAAAGGGGAACAG
GACGAACTGACCAACCGTGCATTGAAGACCTTCGGCCATGAGCAGCTACCGTTCAAGCGATTCACTGCAAACTCGGCCTGGTACTACCTGATGGTGCTTG
GCAACAACCTCTTTGAGGCCTTCAAGGAAGACGTGACCGAAGCGGTCATTCCGGTGTCGGCTTATGCCGACACCTTCCGCCGCAGGTTCATCGATACAGC
CGGAAAACTGGTGCGCCATGCCGGGAAGCTGGTCATGAAAGTCAACAAGGTTGACTATGTTCGCCTGAAGTTCGACCAGCTGTATGAGAAATGCCGTGTC
GGACTTCCGCGACTGGAATAAAGCGGCTGGAAGTGCTGAAAACGACAGAAAACGATGGGATTAGTGCGCCCAACCGATAGGATGTTCAGTGGTAATGGTG
TATATTCCCCTATCACAAGCATTATGCAAGCATTATGCGGGCGTGTAACGCACGCACGGACCAGAACAAAACGTTAAAACGGTAGCCCTATAGGGACAAC
CGGGATTTTTTCACCGGCTGATGCTGCTGGTCAGATACTAATCGCTCAATTCAGG
CCCAGCAGGTGGAGAGCTTTATGGCAAAAGATAAGACGATTAAGGGTAAAAAAGAACAGCAGATTTGCGCCATTTTGCCGAGCGACGACCAACTGACCGG
CAGGGCTGGCTTGAGCGTCTTCGCACTGTACCTGCGCAACATAGGGCTGTTTCCGAATTATGACCGCCTGTTCGGTAAAGTGCGGAAGAATGGCAAGCGC
CTGGCGGTCACCGAGATGTTCGTGCAGATTTTGAGCTTCTTCATGGATGGTACGAGCCGCCATCTGAACTGGTTCGATCATCTTGCCGCTGATGATGCCT
ATGCCGGCCTGCTCGGAACCGGTCGATTGGCCTCGTCGCATGCCGTCAAGCGTTTTATCGGGGCTATCTCCTTCTGTCGGATTTACCTGTTCCGGAGATT
GCTGCAGGATGTGTTTCTCTGGCGCCTGAAGCACACCAGGCCGGAAGTGATCATGCTCGGCATTGATACGACGGTTCTGGACAATGACGATGCCGAGAAG
CGCCATGGGGTGCAACCCACATACAAGAAGGTCAAAGGGTTCCAGCCCTTGCAGATGAACTGGGGCAGGTATGTGGTGGACGCGGTGTTCCGTGGAGGAA
AGAAACACTCGAACCACGGCAATACGGTCAATGAGATGCTGGTGCATATGGTAAGGAAAATCCGGAACGCTTACAGGGAAGAGGTTCCGATCATTGTGCG
CATGGACGCCGGGTTCTTCGACGACGAAGTATTCAAGACCTGTGAGCAACTGCAAATCGGTTATCTGTGCGGCGGCAAGCAGTACAGCAATGTTCTTGAT
GAGGTTGCCGATGCGGTCGACTGGCAATCGTTCAAAAAAGTCGAAACTGACTCAAAAAGCTGGATGTACACCGAATTCATGAGCAGACAAAAGAAATGGA
AGAAAGAGCGCCGGACGATCTTCAGTACGCTCTGGGAAGAGGACGGGCAGTATCTGCTGCAAGGCATATGTCGTGATTCCGTCATCATCACCAATATGGG
CATGGGTGAAAAAGAATCGATGAGCAACTTGCCAAGATCGGCCGCGAGGACTTGCTCGACGCCGGAAAGCTTCTTGGCCTCTACCACGAAAGGGGAACAG
GACGAACTGACCAACCGTGCATTGAAGACCTTCGGCCATGAGCAGCTACCGTTCAAGCGATTCACTGCAAACTCGGCCTGGTACTACCTGATGGTGCTTG
GCAACAACCTCTTTGAGGCCTTCAAGGAAGACGTGACCGAAGCGGTCATTCCGGTGTCGGCTTATGCCGACACCTTCCGCCGCAGGTTCATCGATACAGC
CGGAAAACTGGTGCGCCATGCCGGGAAGCTGGTCATGAAAGTCAACAAGGTTGACTATGTTCGCCTGAAGTTCGACCAGCTGTATGAGAAATGCCGTGTC
GGACTTCCGCGACTGGAATAAAGCGGCTGGAAGTGCTGAAAACGACAGAAAACGATGGGATTAGTGCGCCCAACCGATAGGATGTTCAGTGGTAATGGTG
TATATTCCCCTATCACAAGCATTATGCAAGCATTATGCGGGCGTGTAACGCACGCACGGACCAGAACAAAACGTTAAAACGGTAGCCCTATAGGGACAAC
CGGGATTTTTTCACCGGCTGATGCTGCTGGTCAGATACTAATCGCTCAATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1401 bp | 466 aa | 121 | 1521 | + | No |
Chemistry : DDE
ORF sequence :
MAKDKTIKGKKEQQICAILPSDDQLTGRAGLSVFALYLRNIGLFPNYDRLFGKVRKNGKRLAVTEMFVQILSFFMDGTSRHLNWFDHLAADDAYAGLLGT
GRLASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEKRHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHG
NTVNEMLVHMVRKIRNAYREEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVETDSKSWMYTEFMSRQKKWKKERRTI
FSTLWEEDGQYLLQGICRDSVIITNMGMGEKESMSNLPRSAARTCSTPESFLASTTKGEQDELTNRALKTFGHEQLPFKRFTANSAWYYLMVLGNNLFEA
FKEDVTEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKFDQLYEKCRVGLPRLE
GRLASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEKRHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHG
NTVNEMLVHMVRKIRNAYREEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVETDSKSWMYTEFMSRQKKWKKERRTI
FSTLWEEDGQYLLQGICRDSVIITNMGMGEKESMSNLPRSAARTCSTPESFLASTTKGEQDELTNRALKTFGHEQLPFKRFTANSAWYYLMVLGNNLFEA
FKEDVTEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKFDQLYEKCRVGLPRLE
Blast result :
Comments
ISCph8 is 93% aa similar to ISPelu1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.