ISLar4
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABCK01000024 | ND | Lentisphaera araneosa | Lentisphaera araneosa HTCC2155 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 12/13
IRL : CCTAAATCCGTGAGCTGATGCTGAAAAACACAGCGAAAACAAGAAAACCT
IRR : CCTGAATCCGTGATAGAGATTTAAATATCAGTTTATATCGCTGTGATCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGATAATAC | AAAAA | GAAGATAATA | 5 |
DNA sequence
CCTAAATCCGTGAGCTGATGCTGAAAAACACAGCGAAAACAAGAAAACCTGTTGGTTTATAGTAATTTAAGTTACTACACCAAAATCACCCAACAGGTTT
CTTCATGAATAAAGCATTTAAACTCGATACAGGCAACGACTCTCTTCACAGTATTGGCGGAATATATCTTGCGGGTCAAGTTCTCCAACAAAGCGAAATA
GATCAAGAATTTAGTTCAGAGCATAAGGCAAACTACACTTTCCAAGATGTAGATATCTTTAAGTCACAAATAGGTTTACTTATTCAAGGCTGTGAGCACT
ACACAGACATTAATCAGTTTCGAGAAAATGAAGTGTTTATGAAATCACTTTCGTTAAATAATGTCCCTTCTGAGGAGCGCCTTCGCCAGCGATTGGAAAT
GATGTTGGCCAAGCACGAAAAACTTTTAAAACAGTCAAATACAAAGCTTCTGAAAAAGCAGGTGATGGGCGCAATCTCAAAAGGAGGCATGGAGTTTATT
CCACTTGATATGGACGTGTCCCCCATGGATAATTCAGGGACTCAAAAAGAGAATGTGTGTTGGACATATAAAAATCACGATGGTTTTGCTCCCATGTTTG
CATATATTGGTAAGCAAGGCTTTATGCTTAATCAGGAGTTACGACCAGGCTCACAGCACGCACAAAAAGGAATGCCTCAATTTTTAGATGAAAGTTTTGC
AATGGTGAAAAAGTTGAAGCTTAATCATCCAGTCTTACTTCGCTTAGACTCAGCTCATGATGCTGAGATCAATTTCGATCACTTGCCTGAAGAGCATTAT
TTTCTGATCAAACGAAATCTACGAAAAGAAGATAAAGTGCAGTGGCTTGCGAATGCTCGACGTCTTGGTCGCCAACTCAAATCACGCGATGGTAAGAATA
TATTTGTAGGAGAAATTCATCATAAAACCCCAGGTAATAATGAAAAGCGCAATGTGGTTCCCATGATATTTAAAGTTACGGAACGACTGGAAGACTCAGA
CGGTAATAAACTCTTAATACCTGATATAGAAGTTGAAACATATTGGACAAACCTGCCTTTAGAAGCTGAAGATGTCATTGAACTCTATCATGAACATGGA
ACCAGCGAGCAGTATCATAGTGAACTTAAAACTGACATGAATGTAGAACGTCTTCCCTCGGGGAAGTTTATGGCGAATCAGTTTTTCCTTCACTGCGCTA
TGCTTGCTTTCAATATACTAAGAGTCATTGGAACTCACCTAATTGAGAATAAATCTTTGGCTCCAATAAGAATTAGAGGTACACGTCGACGTTTACGTTG
TGTTATACGTGACTTAATTTTAATCGCCTGTAAGCATGTAAAGCACGCAGGAGTTGAAGTCCTCAAATTTGGTCGACATTGCACTTGGTTTAAACTCTAT
CAAAAAATCTCTCTTAGTCTTTAACTGCAATCAAAAATATCTTTTCAAAAACTCTAATTAAAGAGTTTTCGCTTCGCTGTGGTCAAATTGCACAAGACAC
CCTAAAAAACTTCAATTTTGAGACTCTTTTTATTCAAGTTCATAAATATCATCATGACTGCTAAAGAAATATCACAGTAAAGACTCAAAATATTACAAAG
GATTAACGATCACAGCGATATAAACTGATATTTAAATCTCTATCACGGATTCAGG
CTTCATGAATAAAGCATTTAAACTCGATACAGGCAACGACTCTCTTCACAGTATTGGCGGAATATATCTTGCGGGTCAAGTTCTCCAACAAAGCGAAATA
GATCAAGAATTTAGTTCAGAGCATAAGGCAAACTACACTTTCCAAGATGTAGATATCTTTAAGTCACAAATAGGTTTACTTATTCAAGGCTGTGAGCACT
ACACAGACATTAATCAGTTTCGAGAAAATGAAGTGTTTATGAAATCACTTTCGTTAAATAATGTCCCTTCTGAGGAGCGCCTTCGCCAGCGATTGGAAAT
GATGTTGGCCAAGCACGAAAAACTTTTAAAACAGTCAAATACAAAGCTTCTGAAAAAGCAGGTGATGGGCGCAATCTCAAAAGGAGGCATGGAGTTTATT
CCACTTGATATGGACGTGTCCCCCATGGATAATTCAGGGACTCAAAAAGAGAATGTGTGTTGGACATATAAAAATCACGATGGTTTTGCTCCCATGTTTG
CATATATTGGTAAGCAAGGCTTTATGCTTAATCAGGAGTTACGACCAGGCTCACAGCACGCACAAAAAGGAATGCCTCAATTTTTAGATGAAAGTTTTGC
AATGGTGAAAAAGTTGAAGCTTAATCATCCAGTCTTACTTCGCTTAGACTCAGCTCATGATGCTGAGATCAATTTCGATCACTTGCCTGAAGAGCATTAT
TTTCTGATCAAACGAAATCTACGAAAAGAAGATAAAGTGCAGTGGCTTGCGAATGCTCGACGTCTTGGTCGCCAACTCAAATCACGCGATGGTAAGAATA
TATTTGTAGGAGAAATTCATCATAAAACCCCAGGTAATAATGAAAAGCGCAATGTGGTTCCCATGATATTTAAAGTTACGGAACGACTGGAAGACTCAGA
CGGTAATAAACTCTTAATACCTGATATAGAAGTTGAAACATATTGGACAAACCTGCCTTTAGAAGCTGAAGATGTCATTGAACTCTATCATGAACATGGA
ACCAGCGAGCAGTATCATAGTGAACTTAAAACTGACATGAATGTAGAACGTCTTCCCTCGGGGAAGTTTATGGCGAATCAGTTTTTCCTTCACTGCGCTA
TGCTTGCTTTCAATATACTAAGAGTCATTGGAACTCACCTAATTGAGAATAAATCTTTGGCTCCAATAAGAATTAGAGGTACACGTCGACGTTTACGTTG
TGTTATACGTGACTTAATTTTAATCGCCTGTAAGCATGTAAAGCACGCAGGAGTTGAAGTCCTCAAATTTGGTCGACATTGCACTTGGTTTAAACTCTAT
CAAAAAATCTCTCTTAGTCTTTAACTGCAATCAAAAATATCTTTTCAAAAACTCTAATTAAAGAGTTTTCGCTTCGCTGTGGTCAAATTGCACAAGACAC
CCTAAAAAACTTCAATTTTGAGACTCTTTTTATTCAAGTTCATAAATATCATCATGACTGCTAAAGAAATATCACAGTAAAGACTCAAAATATTACAAAG
GATTAACGATCACAGCGATATAAACTGATATTTAAATCTCTATCACGGATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1320 bp | 439 aa | 105 | 1424 | + | No |
Chemistry : DDE
ORF sequence :
MNKAFKLDTGNDSLHSIGGIYLAGQVLQQSEIDQEFSSEHKANYTFQDVDIFKSQIGLLIQGCEHYTDINQFRENEVFMKSLSLNNVPSEERLRQRLEMM
LAKHEKLLKQSNTKLLKKQVMGAISKGGMEFIPLDMDVSPMDNSGTQKENVCWTYKNHDGFAPMFAYIGKQGFMLNQELRPGSQHAQKGMPQFLDESFAM
VKKLKLNHPVLLRLDSAHDAEINFDHLPEEHYFLIKRNLRKEDKVQWLANARRLGRQLKSRDGKNIFVGEIHHKTPGNNEKRNVVPMIFKVTERLEDSDG
NKLLIPDIEVETYWTNLPLEAEDVIELYHEHGTSEQYHSELKTDMNVERLPSGKFMANQFFLHCAMLAFNILRVIGTHLIENKSLAPIRIRGTRRRLRCV
IRDLILIACKHVKHAGVEVLKFGRHCTWFKLYQKISLSL
LAKHEKLLKQSNTKLLKKQVMGAISKGGMEFIPLDMDVSPMDNSGTQKENVCWTYKNHDGFAPMFAYIGKQGFMLNQELRPGSQHAQKGMPQFLDESFAM
VKKLKLNHPVLLRLDSAHDAEINFDHLPEEHYFLIKRNLRKEDKVQWLANARRLGRQLKSRDGKNIFVGEIHHKTPGNNEKRNVVPMIFKVTERLEDSDG
NKLLIPDIEVETYWTNLPLEAEDVIELYHEHGTSEQYHSELKTDMNVERLPSGKFMANQFFLHCAMLAFNILRVIGTHLIENKSLAPIRIRGTRRRLRCV
IRDLILIACKHVKHAGVEVLKFGRHCTWFKLYQKISLSL
Blast result :
Comments
ISLar4 is 59% aa similar to ISDre4.
References
1] ISfinder annotation (2009)
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.