ISMav8

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008595 ND Mycobacterium avium
Mycobacterium avium 104
DNA section
IS Length : 2064 bp

Ends


IR Length : 13/18

IRL : CCTGCCACCGCCCCGAGGGCAGTTGGCGCATCCGCCCGAACGCCCGCCGG
IRR : CCTGCCACTGGGCCGCTGTAGCGACTAGCTCGGCGGGCACGACCTGCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGGTAGCTCGCTTAGTTCCC2

DNA sequence

CCTGCCACCGCCCCGAGGGCAGTTGGCGCATCCGCCCGAACGCCCGCCGGGTTCGCTCGGCCTTAGCCTGAATCCACCGATGAACGGGCTCGTTGACCGG
GTGTCGTAACGAGGAAAGTGCCCTCTGAGCTGGAAAGATTGATGTTCTCTACGCAACAATCAGTCCTGGTCAGAAAGGCACTTCCGGTGAAAGTGTCCCA
TAGGTTCGCTGCGTCGTCGGCGGTCTTCGATGATGCCCATCTCGTGTCGTGCGCCGGGCTGGTGCCGGTGATGACGCTGGCCGCCCAGACCGGGCTGCCA
GAACTGTTGGCCGACAAGATTTCCATCCCTACACCCAAGATCAAGTCCGGCTCTGCCAACCCATCACCGAAGCTGACCACGCTGATCGCCGGCATGTGTG
TCGGCGCTGACAGCATCGATGACCTCGACCTGGTGCGCGCCGGTGGGATGAAGAGTCTCTTCGGTGGTGTGTACGCAGCGTCGACAGTCGGAACCTTGTT
GCGGGAGTTCACCTTCGGACATGCCCGCCAACTGGAGTCAGTCCTACGTCATCATCTGTCGCACCTGTGTCAGCGGGTGGACCTGCTGCCCGGATCCGAC
AAAGGCGCGTTCATCGACATCGACTCCCTGCTACGTCCGGTATATGGTCACGCCAAGCAAGGCGCCTCCTACGGCCACACCAAGATCGCCGGGAAACAGA
TCCTGCGCAAAGGACTGTCCCCGTTGGTGACCACGATCAGCACCACCGGGGCGGCGCCGGCGATCACCGGGATGCGACTACGGGCCGGGAAAGCCAACTC
CGGCAAAGGCGCCGGCAGAATGATCGCCCAAGCCATCGGGACTGCCCGAGCTGCTGGCGTGCGCGGGCAGATCCTGGTGCGCGGTGATTCGGCCTACGGC
ACCCGCGCCGTGGTGGGTGCCTGCCGAAGCCACGGCGCCCGATTCTCGTTGGTCATGACCCGCAACACCGCCATCGACCGGGCGATCAACTCGATCGACG
AGTCCGCTTGGACGCCGGTGCGTTATCCCGGCGCGGTGCGTGATCCCGACACCGGGGACTGGATCTCCGACGCCGAAGTCGCCGAGATCGGCTACACCGC
GTTTGCGTCCACCAAGGACCGGTTCACCGCCCGCCTGGTGGTACGTCGGGTCAAAGACGCCCGTTTCCGCGACGCGCTGTTCCCGGTGTGGCGATATCAC
CCGTTCTTCACCAACACCGACTTGCCCACCGCCGAGGCGGACATCACTCACCGCCAGCACGCGATCATCGAAACCGTCTTCGCTGACCTGATCGACGGAC
CACTGGCCCACATGCCCTCCGGGCAGTTCGGGGCGAACTCCGCGTGGGTGTTGTGCGCAGCCATCGCCCACAATCTTCTCCGTGCCGCCGGCGTCCTGGC
CGGAGGTGCCCACGCGGTCGCTCGTGGAGCCACCCTGCGCCGCAAAATCGTCAACATCCCAGCCCGGCTGGCCTGCCCTCAACGCCGACCCATCTTGCAC
CTACCAACGCATTGGCCCTGGGCCGATCACTGGATCACGTTGTGGTGCAACACCATCGGCCACAGTCCACCAACAACCGCGACTATCTGACCACCTCGCC
GAATAGGCCCAACCGGAGCACACAGGAAAAGCTGGACAGACCAGCGACCACCTCCTGCGAACACGCCGCCCCGCCCACGGAAATCACCGTCGAACCACAT
CAACCAGGTCAGTCCACGGATCGAGGCTTAGCCGCCGCCGTCTGTCGTGCCATGCGCCTGCTCCGTTCCGTGCAACCTCCGTGCAATAGTCACCCTATCG
GAACCCGACAGAACCTCACGGATGGAAACACCGTTTGACAGGGGTAAATGCTGATGGCGGGGTGTTTCCGGTGGTCACCGGCACTATCGCACGGGCCGGT
TCGGCTAATTCGAATCCTGCCGGGGGCACCACGGCCGGGGGCATTGCATGTCGGCTGGTCAATAGCGATCGATCAGTGCGCCGCCTAAAATCATGCGGTT
ATGGGGCAAGATTCATTGCAGGTCGTGCCCGCCGAGCTAGTCGCTACAGCGGCCCAGTGGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1404 bp467 aa1871590+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VKVSHRFAASSAVFDDAHLVSCAGLVPVMTLAAQTGLPELLADKISIPTPKIKSGSANPSPKLTTLIAGMCVGADSIDDLDLVRAGGMKSLFGGVYAAST
VGTLLREFTFGHARQLESVLRHHLSHLCQRVDLLPGSDKGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLVTTISTTGAAPAITGMRLRA
GKANSGKGAGRMIAQAIGTARAAGVRGQILVRGDSAYGTRAVVGACRSHGARFSLVMTRNTAIDRAINSIDESAWTPVRYPGAVRDPDTGDWISDAEVAE
IGYTAFASTKDRFTARLVVRRVKDARFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAHMPSGQFGANSAWVLCAAIAHNLLRA
AGVLAGGAHAVARGATLRRKIVNIPARLACPQRRPILHLPTHWPWADHWITLWCNTIGHSPPTTATI

 

Blast result :
Comments
ISMav8 is 94% aa similar to ISMsm11. The transposase was reconstructed in silico by deletion of the insertion sequence IS1601.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBanK.