ISMav7

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008595 ND Mycobacterium avium
Mycobacterium avium 104
DNA section
IS Length : 1691 bp

Ends


IR Length : 9/12

IRL : CCCAGATTTTTCGCGAAATGTTGTGAGTTTCGGGGTGTAGATACGCGAAA
IRR : CCTCGATTTTGCATTGAGTTGGTGCGGAGTCGGTTCTGCCTGTGGATTGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCCCGCAGCTAGCGTGCTGTGA4

DNA sequence

CCCAGATTTTTCGCGAAATGTTGTGAGTTTCGGGGTGTAGATACGCGAAAGTGCCTGTCCTGCAAGGGATAATCGGACTTATCTAAGGTTCAGATCGTTC
CAGCTGGAAGGCACTTCGCACGTGAAGAATATCGCGGCCGGGTCGCGGGTGAAAGTGTCGGCCGATGGTCATGGTGTCGTGTCGCATGCCGGGATGGGTA
TGCTGCGCGAACTGGCCGACCGCACGGGACTGTCAGCGCAGGTCAGCGCCGCGTTGGCCGACACCTACCGCGGCCCGTGGGTGTACGCACCCGGCGATGT
CTTCGCTGATCTGGCCGCCGCGGTCGCCGACGGGGCCGATTGCATCGATGGGGTCGGCCAGTTGTGCGGGGACCGTGAGCACGTGTTCGGCGCGAAGGCC
TCGACCACCACGATGTGGCGGTTGATCGACAAGCGGATCGATGCCGCGCGCCTGCCCGGGGTGCGGGCAGCACGAGCCGGCGCGCGGGCCGCAGCATGGG
CGGCCGGAGCCACCCCCACTGGTGATGGCTGGCTGCACATCGACATCGATGCCACCCTGGTCATCGATCACTCCGACAACAAGACCGGCGCCACACCGAC
CTGGAAGAAGACTTTCGGTCTTCATCCGCTGCTGGCGTTTTTGGACCGTCCTGAGATCTCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCACCGGCAAC
GCCGGCTCCAACACCGCCTCCGATCACATCATCGTCCTCAAACAAGCGCTGGCGTCGCTGCCGCCGCGATGGCGGCCCCACCCAGGTGCTCGGGCGGATC
CGGACGCGTCTGGGGTGTTGGTGCGCTGCGACACTGCCGGAGCCACCCACAAGTTCGCCGACGCCTGCCGCGCCGCCGGGGTCGGGTTCTCCTTCGGCTA
CCCCGTCGATGTGCGCGTCCAGGACGCGGTGGACACCCTCAACCTCGCCGATGGCTGGTATCCAGCGATCGACACCGACGGCGGGATCCGCGAGGGGGCC
TGGGTCGCCGAGGCCACCGACCTGGTCAACCTCAGTAGCTGGCCGGCCGGCACCCGGCTGATCCTGCGCAAAGAACGCCCGCATCCCGGTGCGCAGTTGC
GGTTCACCGACGCCGACGGGATGCGGGTCACCGCGTTCATCACCGACACCGAACCCGGTGTCATTGCTGGTCAGGTCGCCGGTCTGGAATTGCGGCACCG
CCAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAAGCCACCGGCCTGCGTAACCTGCCGTGCCACTCGTTCTGGGCCAACGCCGCCTGGCTGGAA
ATCGTGCTGGCCGCCGCCGATCTGGTCACCTGGGCCCGACTGATCGGCTTCCGCGCACATCCCGGCCTGGCTCGCGCCGAGATCGCCACCTTCCGCTACC
GGGTCCTGCACGTCGCTGCCCGTATCACTCGCGGCGCCCGCCAACAACGACTACGTATCGATGCCACCTGGCGCTGGGCATCAGCGATCGCGACCGCCTG
GCAACACCTACGCACCGCCTTCGGATAGAACCCGGCTCACCTGACCCACCGATCAGAAAGACCAGGCCCTGGGAAAGCCCGCCCACCCGGCGACACGGGA
CGCCCCACCACGCCATCACACGAAAACACCTACCCGGCAACACAATCCACAGGCAGAACCGACTCCGCACCAACTCAATGCAAAATCGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1407 bp468 aa1221528+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNIAAGSRVKVSADGHGVVSHAGMGMLRELADRTGLSAQVSAALADTYRGPWVYAPGDVFADLAAAVADGADCIDGVGQLCGDREHVFGAKASTTTMWR
LIDKRIDAARLPGVRAARAGARAAAWAAGATPTGDGWLHIDIDATLVIDHSDNKTGATPTWKKTFGLHPLLAFLDRPEISGGEALAGLLRTGNAGSNTAS
DHIIVLKQALASLPPRWRPHPGARADPDASGVLVRCDTAGATHKFADACRAAGVGFSFGYPVDVRVQDAVDTLNLADGWYPAIDTDGGIREGAWVAEATD
LVNLSSWPAGTRLILRKERPHPGAQLRFTDADGMRVTAFITDTEPGVIAGQVAGLELRHRQHARVEDRIRELKATGLRNLPCHSFWANAAWLEIVLAAAD
LVTWARLIGFRAHPGLARAEIATFRYRVLHVAARITRGARQQRLRIDATWRWASAIATAWQHLRTAFG

 

Blast result :
Comments
ISMav7 is 91% aa similar to ISMsm3.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.