ISCysp12

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011884 ND Cyanothece sp.
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 7425 plasmid pP742502
DNA section
IS Length : 1613 bp

Ends


IR Length : 27/37

IRL : GTAGTTGGTCAGCGCAATAAGAAAGGTTAAATGGGAATCGCTAAATTGAA
IRR : GTAATTAGTCACAGCAAGAAGCATGGCTAATTGAGAAAGCCCAAAAGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
ATACTTCAAACTCTTCTATTGCAAGATG8
CCCCGGAACTGGCTAAAGTTTAATTGAC8
AGGAATAGTAAAAATTTTATATTTTTTA8
TATAGAGTAAGATTTTTCAAGCCCTGTA8
CTGGCCTGTATTCACTATTTTGACCTGC8
TACGACAGAACAGATACTCCGGGGTAAT8
AAAGTAGTTTTCCAAAACTAATCAAGCC8
GCTGCTTGAGCTTCTAACTCGTGGAAAC8
TGTGGACAATCAGAAATCATCTTTGCTC8
TGCCCTTATTGAAATAAGAAGAGAGGAA8
CGTCACAGAGCTTACGATAAGTTCGAGA8
TTTTGTAATTATCAAAACTTCTCAAGCC8
AGCCGTCTTACTTGAGCCAAAGCTTCTT8
TTGGAAGATACTAAAGGTTT0
AAGGTGAATCCAAAAATCAA0
GAGAACCCTACGAATATTGATGGGTATA8
TGTTGATGATGAATAGCTTTCTCTTGAT8
GACAACGATTCTACTTTCTTTATTGGCA8
AGGCTTAGAAACAGATTTTATAATTTGT8

DNA sequence

GTAGTTGGTCAGCGCAATAAGAAAGGTTAAATGGGAATCGCTAAATTGAAGCGGATGGGTTAGGTTGAGCAGTATGGAGCCCAGCGATGCCCACTTAGCA
GCCAGGATGGCAGCCCCCGAGTTTGACCCAGAAGAGATGGGGGTTCGGTATTGGTATGAGCAGTATTTGCGGCAACGGGCAGAGAATGCGGAATTGCGAA
GACAGTTAACCCAATTAGAGGGGGAAGTAGAAGAGTTAAAAGAAACACTGCGGAAGTTGAAGGAACGCGATAGTGGGAATAGCTCACAACCCCCATCGTC
AGATGGATACAAACGTAAAAGCAAAGGGTTGATGCCCCGTCAACGCAAGCAAGGACCGAAATACGGACATGAGGGCAAAACGCGCTATGGATTTGAGACC
GTCGACCATCGCTTGGCGCTTTCCCTAGCGCAGTGCCTAGTCTGTGGCAATGCGTTGGAACGAGACGAAACCACCCCTGTCAAACGGCAGCAGATCGCAG
AACTGGTCGAGCGTCCGGTTGAGGTGTGGGAGTATGAACGCCCGGTCTACACCTGTCCCCTTTGTGGCTGGCACGGTTCTGCTGCCCTGCCGTTGGGCTG
TCGAGAGGACTTTAGCTATGGCGCACGGTTGAGTAGTTTGGTCGGTTGGCTGGGCTACGGCGGACATTTGAGTTGGGCAAAGCAACGGGATTTGATTGCG
ATCATTTTTGGGATTCCCTTGTCGCAAGGTAGTCTTGCCAAGATGCATCGCTGGTTCTGCGAAAGTTTATATCCGAGTTATGAGTCCTGGTGGAGCCTGA
TTCAGCAGCCTGGAGTGCGCTGTGTAGACGAGACGAGCTATCCCATCGATGGAGTCAACTATTGGATGTGGGTGGCGACTTCGAGGGAAGTTTGTGTTTT
GTTTCTCGCTCCGAGTCGGAGTTCTGCCGAGGTGGAATCCTTGTTAGGTAAAAGTTTTGAGGGTATTCTCAGCAGTGATTGTTGGTCTGCCTATAGTCCC
CAGCAAGCCACGGCGAAACAGAAATGTTTGGCGCATATTCAACGAGAACTCGAAGCCCTTAGCGGTTCACGCTTTGAGTCGAATCGGCAGTTCGCAAGCC
AAGTCAGTGCTATCTTCGAGCGGGCGCGGCAAGCCTATCGAGGCTATCATGCGGGCAACTTAACCGTAGAACAACTCCAGACCCAACGACTGATTTTGGA
AGCGGAGCTCACAGACGTGCTCGACCACCCGCCGAAAACTGGGTGGGCAGCAGATGCCCAAGCTTTGGCAAATCGCTTCCACCGCTATTGGTCGGATTGG
TTCACCTTCCTGAGGATGCCAGAGGTCAAACCTGACAATAACGATGCCGAACGTGCCCTGCGTCCAGTAGTGATTCATCGTAAGACCAGTGGTGGTGCTA
GAAGTGCTTGGGGCGGACAGTTAGTGTCACTGATGTTCAGTTTTCTGGAAACGATGCGACTGCAAGGCCAGAATGCGGTGGCTGAACTATTTAATCTACT
GGCAGGGGTTGAGCGTGCTCCCCCTCAATTGCTGCCATCCACTGCTGAATAAAAGCTGAGGTCGGGCTTTTGGGCTTTCTCAATTAGCCATGCTTCTTGC
TGTGACTAATTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1479 bp492 aa741552+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEPSDAHLAARMAAPEFDPEEMGVRYWYEQYLRQRAENAELRRQLTQLEGEVEELKETLRKLKERDSGNSSQPPSSDGYKRKSKGLMPRQRKQGPKYGHE
GKTRYGFETVDHRLALSLAQCLVCGNALERDETTPVKRQQIAELVERPVEVWEYERPVYTCPLCGWHGSAALPLGCREDFSYGARLSSLVGWLGYGGHLS
WAKQRDLIAIIFGIPLSQGSLAKMHRWFCESLYPSYESWWSLIQQPGVRCVDETSYPIDGVNYWMWVATSREVCVLFLAPSRSSAEVESLLGKSFEGILS
SDCWSAYSPQQATAKQKCLAHIQRELEALSGSRFESNRQFASQVSAIFERARQAYRGYHAGNLTVEQLQTQRLILEAELTDVLDHPPKTGWAADAQALAN
RFHRYWSDWFTFLRMPEVKPDNNDAERALRPVVIHRKTSGGARSAWGGQLVSLMFSFLETMRLQGQNAVAELFNLLAGVERAPPQLLPSTAE

 

Blast result :
Comments
ISCysp12 is 72% aa similar to ISCwa4.
References
1] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2009) Direct submission GenBank.

2] ISfinder annotation (2009)