ISCysp12
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011884 | ND | Cyanothece sp. | Cyanothece sp. PCC 7425 Cyanothece sp. PCC 7425 plasmid pP742502 |
DNA section
IS Length : 1613 bp
Ends
IR Length : 27/37
IRL : GTAGTTGGTCAGCGCAATAAGAAAGGTTAAATGGGAATCGCTAAATTGAA
IRR : GTAATTAGTCACAGCAAGAAGCATGGCTAATTGAGAAAGCCCAAAAGCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATACTTCAAA | CTCTTCTA | TTGCAAGATG | 8 |
CCCCGGAACT | GGCTAAAG | TTTAATTGAC | 8 |
AGGAATAGTA | AAAATTTT | ATATTTTTTA | 8 |
TATAGAGTAA | GATTTTTC | AAGCCCTGTA | 8 |
CTGGCCTGTA | TTCACTAT | TTTGACCTGC | 8 |
TACGACAGAA | CAGATACT | CCGGGGTAAT | 8 |
AAAGTAGTTT | TCCAAAAC | TAATCAAGCC | 8 |
GCTGCTTGAG | CTTCTAAC | TCGTGGAAAC | 8 |
TGTGGACAAT | CAGAAATC | ATCTTTGCTC | 8 |
TGCCCTTATT | GAAATAAG | AAGAGAGGAA | 8 |
CGTCACAGAG | CTTACGAT | AAGTTCGAGA | 8 |
TTTTGTAATT | ATCAAAAC | TTCTCAAGCC | 8 |
AGCCGTCTTA | CTTGAGCC | AAAGCTTCTT | 8 |
TTGGAAGATA | CTAAAGGTTT | 0 | |
AAGGTGAATC | CAAAAATCAA | 0 | |
GAGAACCCTA | CGAATATT | GATGGGTATA | 8 |
TGTTGATGAT | GAATAGCT | TTCTCTTGAT | 8 |
GACAACGATT | CTACTTTC | TTTATTGGCA | 8 |
AGGCTTAGAA | ACAGATTT | TATAATTTGT | 8 |
DNA sequence
GTAGTTGGTCAGCGCAATAAGAAAGGTTAAATGGGAATCGCTAAATTGAAGCGGATGGGTTAGGTTGAGCAGTATGGAGCCCAGCGATGCCCACTTAGCA
GCCAGGATGGCAGCCCCCGAGTTTGACCCAGAAGAGATGGGGGTTCGGTATTGGTATGAGCAGTATTTGCGGCAACGGGCAGAGAATGCGGAATTGCGAA
GACAGTTAACCCAATTAGAGGGGGAAGTAGAAGAGTTAAAAGAAACACTGCGGAAGTTGAAGGAACGCGATAGTGGGAATAGCTCACAACCCCCATCGTC
AGATGGATACAAACGTAAAAGCAAAGGGTTGATGCCCCGTCAACGCAAGCAAGGACCGAAATACGGACATGAGGGCAAAACGCGCTATGGATTTGAGACC
GTCGACCATCGCTTGGCGCTTTCCCTAGCGCAGTGCCTAGTCTGTGGCAATGCGTTGGAACGAGACGAAACCACCCCTGTCAAACGGCAGCAGATCGCAG
AACTGGTCGAGCGTCCGGTTGAGGTGTGGGAGTATGAACGCCCGGTCTACACCTGTCCCCTTTGTGGCTGGCACGGTTCTGCTGCCCTGCCGTTGGGCTG
TCGAGAGGACTTTAGCTATGGCGCACGGTTGAGTAGTTTGGTCGGTTGGCTGGGCTACGGCGGACATTTGAGTTGGGCAAAGCAACGGGATTTGATTGCG
ATCATTTTTGGGATTCCCTTGTCGCAAGGTAGTCTTGCCAAGATGCATCGCTGGTTCTGCGAAAGTTTATATCCGAGTTATGAGTCCTGGTGGAGCCTGA
TTCAGCAGCCTGGAGTGCGCTGTGTAGACGAGACGAGCTATCCCATCGATGGAGTCAACTATTGGATGTGGGTGGCGACTTCGAGGGAAGTTTGTGTTTT
GTTTCTCGCTCCGAGTCGGAGTTCTGCCGAGGTGGAATCCTTGTTAGGTAAAAGTTTTGAGGGTATTCTCAGCAGTGATTGTTGGTCTGCCTATAGTCCC
CAGCAAGCCACGGCGAAACAGAAATGTTTGGCGCATATTCAACGAGAACTCGAAGCCCTTAGCGGTTCACGCTTTGAGTCGAATCGGCAGTTCGCAAGCC
AAGTCAGTGCTATCTTCGAGCGGGCGCGGCAAGCCTATCGAGGCTATCATGCGGGCAACTTAACCGTAGAACAACTCCAGACCCAACGACTGATTTTGGA
AGCGGAGCTCACAGACGTGCTCGACCACCCGCCGAAAACTGGGTGGGCAGCAGATGCCCAAGCTTTGGCAAATCGCTTCCACCGCTATTGGTCGGATTGG
TTCACCTTCCTGAGGATGCCAGAGGTCAAACCTGACAATAACGATGCCGAACGTGCCCTGCGTCCAGTAGTGATTCATCGTAAGACCAGTGGTGGTGCTA
GAAGTGCTTGGGGCGGACAGTTAGTGTCACTGATGTTCAGTTTTCTGGAAACGATGCGACTGCAAGGCCAGAATGCGGTGGCTGAACTATTTAATCTACT
GGCAGGGGTTGAGCGTGCTCCCCCTCAATTGCTGCCATCCACTGCTGAATAAAAGCTGAGGTCGGGCTTTTGGGCTTTCTCAATTAGCCATGCTTCTTGC
TGTGACTAATTAC
GCCAGGATGGCAGCCCCCGAGTTTGACCCAGAAGAGATGGGGGTTCGGTATTGGTATGAGCAGTATTTGCGGCAACGGGCAGAGAATGCGGAATTGCGAA
GACAGTTAACCCAATTAGAGGGGGAAGTAGAAGAGTTAAAAGAAACACTGCGGAAGTTGAAGGAACGCGATAGTGGGAATAGCTCACAACCCCCATCGTC
AGATGGATACAAACGTAAAAGCAAAGGGTTGATGCCCCGTCAACGCAAGCAAGGACCGAAATACGGACATGAGGGCAAAACGCGCTATGGATTTGAGACC
GTCGACCATCGCTTGGCGCTTTCCCTAGCGCAGTGCCTAGTCTGTGGCAATGCGTTGGAACGAGACGAAACCACCCCTGTCAAACGGCAGCAGATCGCAG
AACTGGTCGAGCGTCCGGTTGAGGTGTGGGAGTATGAACGCCCGGTCTACACCTGTCCCCTTTGTGGCTGGCACGGTTCTGCTGCCCTGCCGTTGGGCTG
TCGAGAGGACTTTAGCTATGGCGCACGGTTGAGTAGTTTGGTCGGTTGGCTGGGCTACGGCGGACATTTGAGTTGGGCAAAGCAACGGGATTTGATTGCG
ATCATTTTTGGGATTCCCTTGTCGCAAGGTAGTCTTGCCAAGATGCATCGCTGGTTCTGCGAAAGTTTATATCCGAGTTATGAGTCCTGGTGGAGCCTGA
TTCAGCAGCCTGGAGTGCGCTGTGTAGACGAGACGAGCTATCCCATCGATGGAGTCAACTATTGGATGTGGGTGGCGACTTCGAGGGAAGTTTGTGTTTT
GTTTCTCGCTCCGAGTCGGAGTTCTGCCGAGGTGGAATCCTTGTTAGGTAAAAGTTTTGAGGGTATTCTCAGCAGTGATTGTTGGTCTGCCTATAGTCCC
CAGCAAGCCACGGCGAAACAGAAATGTTTGGCGCATATTCAACGAGAACTCGAAGCCCTTAGCGGTTCACGCTTTGAGTCGAATCGGCAGTTCGCAAGCC
AAGTCAGTGCTATCTTCGAGCGGGCGCGGCAAGCCTATCGAGGCTATCATGCGGGCAACTTAACCGTAGAACAACTCCAGACCCAACGACTGATTTTGGA
AGCGGAGCTCACAGACGTGCTCGACCACCCGCCGAAAACTGGGTGGGCAGCAGATGCCCAAGCTTTGGCAAATCGCTTCCACCGCTATTGGTCGGATTGG
TTCACCTTCCTGAGGATGCCAGAGGTCAAACCTGACAATAACGATGCCGAACGTGCCCTGCGTCCAGTAGTGATTCATCGTAAGACCAGTGGTGGTGCTA
GAAGTGCTTGGGGCGGACAGTTAGTGTCACTGATGTTCAGTTTTCTGGAAACGATGCGACTGCAAGGCCAGAATGCGGTGGCTGAACTATTTAATCTACT
GGCAGGGGTTGAGCGTGCTCCCCCTCAATTGCTGCCATCCACTGCTGAATAAAAGCTGAGGTCGGGCTTTTGGGCTTTCTCAATTAGCCATGCTTCTTGC
TGTGACTAATTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1479 bp | 492 aa | 74 | 1552 | + | No |
Chemistry : DDE
ORF sequence :
MEPSDAHLAARMAAPEFDPEEMGVRYWYEQYLRQRAENAELRRQLTQLEGEVEELKETLRKLKERDSGNSSQPPSSDGYKRKSKGLMPRQRKQGPKYGHE
GKTRYGFETVDHRLALSLAQCLVCGNALERDETTPVKRQQIAELVERPVEVWEYERPVYTCPLCGWHGSAALPLGCREDFSYGARLSSLVGWLGYGGHLS
WAKQRDLIAIIFGIPLSQGSLAKMHRWFCESLYPSYESWWSLIQQPGVRCVDETSYPIDGVNYWMWVATSREVCVLFLAPSRSSAEVESLLGKSFEGILS
SDCWSAYSPQQATAKQKCLAHIQRELEALSGSRFESNRQFASQVSAIFERARQAYRGYHAGNLTVEQLQTQRLILEAELTDVLDHPPKTGWAADAQALAN
RFHRYWSDWFTFLRMPEVKPDNNDAERALRPVVIHRKTSGGARSAWGGQLVSLMFSFLETMRLQGQNAVAELFNLLAGVERAPPQLLPSTAE
GKTRYGFETVDHRLALSLAQCLVCGNALERDETTPVKRQQIAELVERPVEVWEYERPVYTCPLCGWHGSAALPLGCREDFSYGARLSSLVGWLGYGGHLS
WAKQRDLIAIIFGIPLSQGSLAKMHRWFCESLYPSYESWWSLIQQPGVRCVDETSYPIDGVNYWMWVATSREVCVLFLAPSRSSAEVESLLGKSFEGILS
SDCWSAYSPQQATAKQKCLAHIQRELEALSGSRFESNRQFASQVSAIFERARQAYRGYHAGNLTVEQLQTQRLILEAELTDVLDHPPKTGWAADAQALAN
RFHRYWSDWFTFLRMPEVKPDNNDAERALRPVVIHRKTSGGARSAWGGQLVSLMFSFLETMRLQGQNAVAELFNLLAGVERAPPQLLPSTAE
Blast result :
Comments
ISCysp12 is 72% aa similar to ISCwa4.
References
1] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2009) Direct submission GenBank.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)