ISMva3
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008726 | ND | Mycobacterium vanbaalenii | Mycobacterium vanbaalenii PYR-1 |
DNA section
IS Length : 1658 bp
Ends
IR Length : 12/15
IRL : CCTCGATCCACCGATGAATCAGCTGGTCATCGGGTGTCGTAACGAGGAAA
IRR : CCTCGATCCGTGGATCGACCCTGTTGAGGTTCTTGTGGCTGGTTCTTGTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCGCTCACA | CTAAG | CGGACCAGGA | 5 |
| TGCGCCGAGG | CTTAG | GCTGGTCCCG | 5 |
| GGCCCCGGGG | CTAAG | TTGCTGCCAA | 5 |
DNA sequence
CCTCGATCCACCGATGAATCAGCTGGTCATCGGGTGTCGTAACGAGGAAAGTGCCCTCTGAGCTGTGATGATGAGTGTTCTCTACGCACTTATCGACACA
ACTCCGAAAGGCACTTCCGGTGCAAGTGTCCCATAAGTTCGCCGCGTCGTCGGCGGTCTTCGATGATGACCATCTCGTGTCGTGCGCAGGACTGGTCCCG
GTGATGACGTTGGCCGCCCAGACGGGGTTGGCACAGCTGTTGGCCGCCAAGGTGCGCATTACCGAGCCGCGGATCAAGTCCGGATCGGCCAACCCGGCAC
CGAAGCTGACGACCGTGGTCGCGGGGATGTGCGCCGGCGCGGACTGCATTGATGACCTCGACCTCGTGCGTAGCGGTGGGATGAAGACACTGTTCGACGG
TGTGTACGCTCCCTCGACCATCGGGACACTGTTGCGGGAGTTCACCTTCGGACACGCCCGCCAACTCGAATCGGTTCTACGAGAGCATCTGGCCGGGCTG
TGTGAGCGCGTCCAACTGCTGCCGGGCAGCGATGAGCGGGCGTTTGTCGATATCGACTCGCTGCTGCGCCCGGTCTACGGCCGCGCCAAGCAAGGCGCCT
CTTACGGGCACACCAAGATCGCCGGCAAGCAGATCCTGCGCAAGGGTCTGTCCCCGTTGGTCACCACCATCAGCACCGAGACAGCAGCTCCGGTGATCAC
CGGAGCCCGGCTACGGGCGGGCAAGACCAACTCCGGCAAAGGCGCCGCCCGGATGATCGCCCAAGCGGTCGCCACCGCCCGCGCCAGCGGTGTCACCGGG
CAGATCCTGGTGCGTGGTGACTCGGCCTACGGCAACAGCGCCGTGGTGGCCGCCTGCCGTCGCGCCGGAGCCCGGTTCTCGCTGGTGCTGACCAAGACCG
CCGCCGTCGCTGCAGCCATCGAGTCCATTTCCGAGAGCGCCTGGGTTCCGGTCAAATATCCCGGCGCGGTCCGCGACCCCGACACCGGCGCCTGGATCTC
CGATGCCGAAGTCGCCGAAACCACATACACCGCTTTCAGTTCCACCAAGACCCCGGTCACTGCACGGTTGATCGTGCGCCGGGTCAAAGACGCCCGGTTC
CTCGATGCGCTGTTTCCGGTGTGGCGGTACCACCCGTTCTTCACCGACTCCGACGAACCCGTCGACGCCTCTGACATCACCCATCGCCGCCACGCCATCA
TCGAAACCGTGTTCGCCGACCTGATCGACGGACCTTTGGCGCACATGCCCTCGGGGCGGTTCGGCGCGAACTCGGCCTGGATCCTGTGTGCTGCGATCGC
CTATAACCTGCTGCGCGCCGTCGGGGTGCTCGCCGGAGGTGTCCATGCGGTCGCGCGAGGAGCCACACTGCGCCGCAAGTTCGTCAACATCCCGGCCCGA
CTGGCTCGGCCGCAACGCCGAGCAATCCTGCACCTACCCACCCACTGGCCGTGGGCCCAGCAGTGGCTCACATTGTGGCGCAACACCATCGGTCACAGCC
CGCCAACTGCTGCGACCCACTGACCACCGGCCCACAGGCCTCGACAAGAACATCACAGGAAAAGCTGGGCAGACCAGCAGCTACAGGCTGCCCACGATCT
GGGCGCACGACAAGAACCAGCCACAAGAACCTCAACAGGGTCGATCCACGGATCGAGG
ACTCCGAAAGGCACTTCCGGTGCAAGTGTCCCATAAGTTCGCCGCGTCGTCGGCGGTCTTCGATGATGACCATCTCGTGTCGTGCGCAGGACTGGTCCCG
GTGATGACGTTGGCCGCCCAGACGGGGTTGGCACAGCTGTTGGCCGCCAAGGTGCGCATTACCGAGCCGCGGATCAAGTCCGGATCGGCCAACCCGGCAC
CGAAGCTGACGACCGTGGTCGCGGGGATGTGCGCCGGCGCGGACTGCATTGATGACCTCGACCTCGTGCGTAGCGGTGGGATGAAGACACTGTTCGACGG
TGTGTACGCTCCCTCGACCATCGGGACACTGTTGCGGGAGTTCACCTTCGGACACGCCCGCCAACTCGAATCGGTTCTACGAGAGCATCTGGCCGGGCTG
TGTGAGCGCGTCCAACTGCTGCCGGGCAGCGATGAGCGGGCGTTTGTCGATATCGACTCGCTGCTGCGCCCGGTCTACGGCCGCGCCAAGCAAGGCGCCT
CTTACGGGCACACCAAGATCGCCGGCAAGCAGATCCTGCGCAAGGGTCTGTCCCCGTTGGTCACCACCATCAGCACCGAGACAGCAGCTCCGGTGATCAC
CGGAGCCCGGCTACGGGCGGGCAAGACCAACTCCGGCAAAGGCGCCGCCCGGATGATCGCCCAAGCGGTCGCCACCGCCCGCGCCAGCGGTGTCACCGGG
CAGATCCTGGTGCGTGGTGACTCGGCCTACGGCAACAGCGCCGTGGTGGCCGCCTGCCGTCGCGCCGGAGCCCGGTTCTCGCTGGTGCTGACCAAGACCG
CCGCCGTCGCTGCAGCCATCGAGTCCATTTCCGAGAGCGCCTGGGTTCCGGTCAAATATCCCGGCGCGGTCCGCGACCCCGACACCGGCGCCTGGATCTC
CGATGCCGAAGTCGCCGAAACCACATACACCGCTTTCAGTTCCACCAAGACCCCGGTCACTGCACGGTTGATCGTGCGCCGGGTCAAAGACGCCCGGTTC
CTCGATGCGCTGTTTCCGGTGTGGCGGTACCACCCGTTCTTCACCGACTCCGACGAACCCGTCGACGCCTCTGACATCACCCATCGCCGCCACGCCATCA
TCGAAACCGTGTTCGCCGACCTGATCGACGGACCTTTGGCGCACATGCCCTCGGGGCGGTTCGGCGCGAACTCGGCCTGGATCCTGTGTGCTGCGATCGC
CTATAACCTGCTGCGCGCCGTCGGGGTGCTCGCCGGAGGTGTCCATGCGGTCGCGCGAGGAGCCACACTGCGCCGCAAGTTCGTCAACATCCCGGCCCGA
CTGGCTCGGCCGCAACGCCGAGCAATCCTGCACCTACCCACCCACTGGCCGTGGGCCCAGCAGTGGCTCACATTGTGGCGCAACACCATCGGTCACAGCC
CGCCAACTGCTGCGACCCACTGACCACCGGCCCACAGGCCTCGACAAGAACATCACAGGAAAAGCTGGGCAGACCAGCAGCTACAGGCTGCCCACGATCT
GGGCGCACGACAAGAACCAGCCACAAGAACCTCAACAGGGTCGATCCACGGATCGAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1449 bp | 482 aa | 75 | 1523 | + | No |
Chemistry : DDE
ORF sequence :
MFSTHLSTQLRKALPVQVSHKFAASSAVFDDDHLVSCAGLVPVMTLAAQTGLAQLLAAKVRITEPRIKSGSANPAPKLTTVVAGMCAGADCIDDLDLVRS
GGMKTLFDGVYAPSTIGTLLREFTFGHARQLESVLREHLAGLCERVQLLPGSDERAFVDIDSLLRPVYGRAKQGASYGHTKIAGKQILRKGLSPLVTTIS
TETAAPVITGARLRAGKTNSGKGAARMIAQAVATARASGVTGQILVRGDSAYGNSAVVAACRRAGARFSLVLTKTAAVAAAIESISESAWVPVKYPGAVR
DPDTGAWISDAEVAETTYTAFSSTKTPVTARLIVRRVKDARFLDALFPVWRYHPFFTDSDEPVDASDITHRRHAIIETVFADLIDGPLAHMPSGRFGANS
AWILCAAIAYNLLRAVGVLAGGVHAVARGATLRRKFVNIPARLARPQRRAILHLPTHWPWAQQWLTLWRNTIGHSPPTAATH
GGMKTLFDGVYAPSTIGTLLREFTFGHARQLESVLREHLAGLCERVQLLPGSDERAFVDIDSLLRPVYGRAKQGASYGHTKIAGKQILRKGLSPLVTTIS
TETAAPVITGARLRAGKTNSGKGAARMIAQAVATARASGVTGQILVRGDSAYGNSAVVAACRRAGARFSLVLTKTAAVAAAIESISESAWVPVKYPGAVR
DPDTGAWISDAEVAETTYTAFSSTKTPVTARLIVRRVKDARFLDALFPVWRYHPFFTDSDEPVDASDITHRRHAIIETVFADLIDGPLAHMPSGRFGANS
AWILCAAIAYNLLRAVGVLAGGVHAVARGATLRRKFVNIPARLARPQRRAILHLPTHWPWAQQWLTLWRNTIGHSPPTAATH
Blast result :
Comments
ISMva3 is 60% aa similar to ISBli4.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I.J., Miller,C. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I.J., Miller,C. and Richardson,P. (2006) Direct submission GenBank.