ISMsm11

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1658 bp

Ends


IR Length : 9/14

IRL : CCTCGATCCACCGATGAATCGCCTGGTCGGAGGGTGTTGATATAAGGAAA
IRR : CCTGAATCCGTGGAGCGGCCCTCCTTGAGGTGTCCGTGTGTGGTTTCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATGACCGCGCCTTAGGCGGCGCGGC5

DNA sequence

CCTCGATCCACCGATGAATCGCCTGGTCGGAGGGTGTTGATATAAGGAAAGTGCCCTTTGAGCTGGGATGATTGGAGTTACCACACTTCGATCAGCCCAC
GGTCAGAAAGGCACTTCCGGTGCAAGTGTCCCATAGGTTCGCCGTGTCGTCGGCGGTCTTCGATGATGCCCATCTCGTGTCGTGCGCCGGGCTGGTGCCG
GTGATGACGTTGGCGGCCCAGACCGGACTACCGAAGTTGTTGGCCGACAAGATTTCCATTCCGGCACCGAAGATCAAATCCGGCTCGGCGAATCCGTCCC
CGAAGCTGACCACGGTGATCGCCGGCATGTGTGTCGGCGCGGACAGCATTGATGACCTCGACCTCGTGCGTGGCGGCGGGATGAAGACACTCTTTGGCGG
TGTGTATGCACCGTCAACTGTTGGTACTTTGTTGCGGGAGTTCACCTTCGGACACGCCCGGCAGTTGGAGTCGGTCCTGCGTCATCATCTGGCCGCACTC
TGTGCGCGGGTGGACCTGCTGCCCGGATCCGACACGGGGGCGTTCATCGACATCGACTCACTGCTGCGCCCGGTCTATGGCCACGCCAAACAGGGTGCCT
CCTACGGGCATACCAAGATCGCTGGTAAGCAGGTTCTGCGTAAAGGGCTCTCCCCGTTGGCGACGACGATCAGCACCCCCGGAGCGGCGCCGGTGATCGC
CGGGATGCGGCTGCGCGCCGGTAAGACCAGTTCCGGGAAGGGTGCGGGCCGCATGGTCGCCCAAGCCATCGCCACCGCCCGCGCCGCCGGCGTGCGCGGG
CAACTGCTGGTGCGTGGCGATTCGTCCTACGGCACCCGGTCGGTGGTGGGCGCCTGCCGAGCCCACAATGCGCACTTCTCGGTGGTGATGACCCGCAATA
CCGCGGTTGATCGGGCCATCAGTTCGATCGACGAGCAGGCCTGGGAGCCGGTCAACTATCCCGGTGCAGTGCGTGATCCCGACACCGGTGACTGGATTTC
TGATGCCGAGGTCGCCGAGGTCAGCTACACCGCCTTCGCCTCTACCAAAGATCGGTTCACCGCGCGGTTGGTGGTGCGGCGAGTCAAAGACGCGAGATTT
CGGGACGCGCTGTTCCCGGTGTGGCGGTATCACCCGTTCTTCACCAACACAGACTTGCCGACCGCCGAGGCTGACATCACCCACCGCCAGCACGCGATCA
TCGAAACCGTCTTCGCCGATCTGATCGACGGACCCCTGGCCCACATGCCCTCAGGACAGTTCGGTGCCAACAGTGCGTGGGTGTTGTGCGCGGCGATCGC
GCACAACCTGCTGCGCGCCGCCGGCGTGCTCGCAGGAGGTGCCCACGTGGTTGCCCGCGGCGCGACGCTGCGCCGCAAGATCGTCAACATTCCCGCCCGT
CTGGCCCGACCCCAGCGTCGACCGATCCTGCACCTCCCCGAGCACTGGCCCTGGACAGAGCACTGGCTCACGTTGTGGCGCAACACCATCGGATACAGCC
CACCGCTACCGGCAACGACCTGACCAACGCGCCGAACAGGCCCAACCGGAGCACACAGGAAAAGCTGGGCAGACCAGCAACTACCGCATGCCCGCAACAC
CGAACGCAGCAGAAACCACACACGGACACCTCAAGGAGGGCCGCTCCACGGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1404 bp467 aa1201523+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVSHRFAVSSAVFDDAHLVSCAGLVPVMTLAAQTGLPKLLADKISIPAPKIKSGSANPSPKLTTVIAGMCVGADSIDDLDLVRGGGMKTLFGGVYAPST
VGTLLREFTFGHARQLESVLRHHLAALCARVDLLPGSDTGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQVLRKGLSPLATTISTPGAAPVIAGMRLRA
GKTSSGKGAGRMVAQAIATARAAGVRGQLLVRGDSSYGTRSVVGACRAHNAHFSVVMTRNTAVDRAISSIDEQAWEPVNYPGAVRDPDTGDWISDAEVAE
VSYTAFASTKDRFTARLVVRRVKDARFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAHMPSGQFGANSAWVLCAAIAHNLLRA
AGVLAGGAHVVARGATLRRKIVNIPARLARPQRRPILHLPEHWPWTEHWLTLWRNTIGYSPPLPATT

 

Blast result :
Comments
ISMsm11 is 60% aa similar to ISRjo1.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.