ISMsm10

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1661 bp

Ends


IR Length : 14/18

IRL : CCTCGATCCACCGATGGAAAGCCTGGATAGGCGGGTGTCGATATAAGGAA
IRR : CCTCGATCCGTGGATCGACCCTGTTGAGGTTGTTTGGGGCTGATTTTTGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCGAGAGGTTTAGGCCGGTCAGC5

DNA sequence

CCTCGATCCACCGATGGAAAGCCTGGATAGGCGGGTGTCGATATAAGGAAAGTGCCTTCTGAGCTGCGATGATGAGTGTTCCTTACGCACTTATCGGCAC
AACTTCGAAAGGCACTTCCGGTGAAAGTGTCGCACAACTTCATGGCTGCGTCTGCAGTGTTCGATGATGAGCATCTGGTGTCGTGCGCCGGCCTGGTGCC
GGTGATGACCCTGGCCAGCCAGACCGGGCTATCGGACCTGATCGCGGACAAGGTCGAAATCGTTGAACCGCGGATCAAGTCCGGCTCGGCCAATCCGTCA
CCGAAGCTGACGACAGTAATCGCCGGAATGTGCGCCGGCGCCGACAGCATCGACGACCTCGACCTCGTGCGCTCCGGTGGAATGAAAGCCCTCTTTGGCG
GCGTGTACGCGCCCTCGACCATCGGAACACTGTTGCGGGAGTTCACCTTCGGACACGCCCGACAACTGGAAGCAGTGCTGCGTGAGCATCTGGGCGGGCT
CTGCGAGCGCGTCGCGTTGCTACCCGGCGCCGATACCCAAGCGTTCGTCGACATCGATTCACTGCTGCGCCCGGTCTACGGCCACGCCAAACAAGGAGCC
TCCTACGGACACACCAAGATCGCCGGCAAGCAGATCCTGCGCAAAGGCCTCTCGCCGCTGATCACCACCATCAGCACCACCACGGGTGCCCCGATGATCA
CCGGAGCCCGGCTGCGGGCGGGCAAGACCAACTCCGGCAAGGGCGCAGCCCGGATGATCGCCCAAGCAGTCACCACCGCCCGCGCCGCCGGTGTCAACGG
GCAGATCCTGGTGCGCGGAGACTCGGCCTACGGCAACAGCACCGTGGTGAATGCCTGCCGACGCGCCGGTGCCCACTTCTCGCTGGTGCTGACCAAGACC
CGCGCCGTCGCTGCGGCCATCGAGGCCATCAGCGATAACGCCTGGACCCCGGTCAACTACCCCGGCGCAGTGCGCGACCCCGACACCGGCGCCTGGATCT
CCGATGCCGAAGTCGCCGAAACCACCTACACCGCTTTCAGTTCCACCAACACCCCGGTCACCGCTCGGTTGATCGTGCGTCGGGTCAAAGACGCCCGATA
CCTCGATGCGCTGTTTCCGGTGTGGCGGTATCACCCCTTCTTCACCGATTCCGACGAACCCGTCGACGCCGCTGACATCACCCACCGCCGCCACGCCATC
ATCGAAACCGTGTTCGCCGACCTGATCGACGGACCGTTGGCGCATATGCCCTCCGGGCGGTTCGGCGCGAACTCGGCCTGGATCCTGTGCGCGGCGATCG
CCCACAACCTGCTACGCGCCGCCGGGGTGCTCGCCGGCGGTGCCCATGCCCTCGCGCGCGGAGCCACACTGCGCCGCAAGATCGTCAACATCCCGGCCCG
ACTGGCCCGACCCCAACGCCGACCCATCCTGCATCTACCCTCGCATTGGCCGTGGGCCCAGCAGTGGCTCACATTGTGGCGCAACACAATCGGCTACAGC
CCGCCAACTGCTGCGACCCACTGACCACCGGACCCACAGGCCCCGACCCGAACATCACAGGAAAAGCTGGGCAGACCAGCGGCTACAGGCTGCCCACGAC
CTGGGCGCACGACAAAAATCAGCCCCAAACAACCTCAACAGGGTCGATCCACGGATCGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1404 bp467 aa1211524+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKVSHNFMAASAVFDDEHLVSCAGLVPVMTLASQTGLSDLIADKVEIVEPRIKSGSANPSPKLTTVIAGMCAGADSIDDLDLVRSGGMKALFGGVYAPST
IGTLLREFTFGHARQLEAVLREHLGGLCERVALLPGADTQAFVDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLITTISTTTGAPMITGARLRA
GKTNSGKGAARMIAQAVTTARAAGVNGQILVRGDSAYGNSTVVNACRRAGAHFSLVLTKTRAVAAAIEAISDNAWTPVNYPGAVRDPDTGAWISDAEVAE
TTYTAFSSTNTPVTARLIVRRVKDARYLDALFPVWRYHPFFTDSDEPVDAADITHRRHAIIETVFADLIDGPLAHMPSGRFGANSAWILCAAIAHNLLRA
AGVLAGGAHALARGATLRRKIVNIPARLARPQRRPILHLPSHWPWAQQWLTLWRNTIGYSPPTAATH

 

Blast result :
Comments
ISMsm10 is 60% aa similar to ISBli4.
References
1] ISfinder annotation (2009)
2] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct submission GenBank.