ISGosp1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB108679 ND Gordonia sp.
Gordonia sp. TM414
DNA section
IS Length : 1642 bp

Ends


IR Length : 24

IRL : CCTGGATCCGTGGAGGGGTGTGGGGTGTCGGTGATATAAAAATGCCCTCT
IRR : CCTGGATCCGTGGAGGGGTGTGGGTGAGTGGTGGTGGGGTGTGCGTGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCTCGCACCTCAGGCAGCGACAG5

DNA sequence

CCTGGATCCGTGGAGGGGTGTGGGGTGTCGGTGATATAAAAATGCCCTCTGAGCTGGGATGATTGGTGGTGTTGAGACACTAAACATCCCAGCTCAGAAG
GCACTTTCAGTGAAAGTATCACACAGCTTCTCGGCCACGTCGGCACTCTTTGACGATGACAATCTGGTGTCGCATGCCGGGTTGGTGCCGGTGATGGAAT
TGGCTCACTCGACCGGGGTGGCCGCATTGCTGGCCGAACGGGTCGATCTGGGCACCACCCGGGTCGCTTCCGCCGGAGCCAACCTGGAAGCGAAACTGCT
GACCGTGATCGCCGGGTTATGTTGCGGCGCTGACAGTATCGACGACCTCGACATCGTCCGGGCCGGTGGGCACACCCGCCTGTTCGACCGCGTATACGCC
CCGGCCACGATCGGACAAACCCTGCGGGAGTTCACCCCCGGGCACACCCGACAACTCAACGCCGTGATGACGCGCTCGCTGCCGGCGATGTGTGCCCGGG
CAGGATTGTTACCCACCGACGGTGCCCGCGTGTTCCTCGATATCGATTCCCTGCTGCGCCCGGTCTATGGCTACCAGAAGACGGCGCCTCCTACGGACAC
GCCAAGATCGCCGGACGTGAACTGCTGCGTCGGGGCCTCTCACCGCTGATCGCCACCCTCAGTGCACCCGAGCACCCACCGGTGATCGCCAACGCCTGGC
TGCGCGCCGGGCGCGCCGCCTCCGGCGCCGGAGCAGCAACGATGCTCGCCGAAACCATCGCCACCGCCCGCCGCGCCGGAGCCGCCGGTGAGATCACCGT
GCGCGCGGATGCCGCCTACGGGTCGGCCGAGGTGATGGCTACCTGCCAACGCCTGGGCGCCACGTTCTCGCTGGTCCTGCGGACCAACACCGCGATCACC
CGCGCAATCACCGCCATCGGCGACGACGCCTGGACACCGGTGTCCTATCCCGGGGCGGTCACCGACCCCGACACCGGCGAGTTGATCTCTGATGCCGAAG
TCGCCGAAACCACCTACACGGTCAAACCACTCTCACCGCACCCGATCACCGCCCGACTCATCGTGCGGCGAGTCAAAGCCCATCACCCCGCCGACACCGA
CACCCTGATGCCGGCCTGGCGGTATCACTCGTTTTTCACCAACACCACCGACGACACCGTTACCGCCGACATCAACCACCGCGGCCACGCCGTCATCGAG
ACCGTGTTCGCCGACCTCATCGACGGACCGCTGGCGCATCTTCCCTCCGGCGTTTTCGGCGCCAACGCCGCCTGGCTGGCCCTGACCGCCATCAGCCACA
ACCTCATGCGCACCCTCGCCGCGCTCAGCGCGGCCCCCAGACTACGAGCCGCGCGCGGAGCGACGCTGCGCCGCACGCTCATCGCCGTGCCCGCCCGACT
GGCCCGACCAGCACGAACACCCATCCTGCACCTGCCCCGACACTGGCCATCCCAACACGCATTCACCACCCTGTGGGCCGCGGTGAACACCACCTGACCC
AACACCCCAACACGCCCACCCACGACCAGGAAACCCAGTGAAAAAGCTGACGCAAGATCAGCGAATACCCGACGCCCACAACACGATCAACCACTCACGC
ACACCCCACCACCACTCACCCACACCCCTCCACGGATCCAGG
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1388 bp463 aa1101497+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VKVSHSFSATSALFDDDNLVSHAGLVPVMELAHSTGVAALLAERVDLGTTRVASAGANLEAKLLTVIAGLCCGADSIDDLDIVRAGGHTRLFDRVYAPAT
IGQTLREFTPGHTRQLNAVMTRSLPAMCARAGLLPTDGARVFLDIDSLLRPVYGYQKEDGASYGHAKIAGRELLRRGLSPLIATLSAPEHPPVIANAWLR
AGRAASGAGAATMLAETIATARRAGAAGEITVRADAAYGSAEVMATCQRLGATFSLVLRTNTAITRAITAIGDDAWTPVSYPGAVTDPDTGELISDAEVA
ETTYTVKPLSPHPITARLIVRRVKAHHPADTDTLMPAWRYHSFFTNTTDDTVTADINHRGHAVIETVFADLIDGPLAHLPSGVFGANAAWLALTAISHNL
MRTLAALSAAPRLRAARGATLRRTLIAVPARLARPARTPILHLPRHWPSQHAFTTLWAAVNTT

 

Blast result :
Comments
ISGosp1 is 58% aa similar to ISMaa1.
The transposase was reconstructed in silico, there is a non programmed frameshift.
References
1] ISfinder annotation (2009)
2] Matsui,T. and Maruhashi,K. (2004) Curr. Microbiol. 48 (2), 130-134