ISGosp1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB108679 | ND | Gordonia sp. | Gordonia sp. TM414 |
DNA section
IS Length : 1642 bp
Ends
IR Length : 24
IRL : CCTGGATCCGTGGAGGGGTGTGGGGTGTCGGTGATATAAAAATGCCCTCT
IRR : CCTGGATCCGTGGAGGGGTGTGGGTGAGTGGTGGTGGGGTGTGCGTGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCCTCGCAC | CTCAG | GCAGCGACAG | 5 |
DNA sequence
CCTGGATCCGTGGAGGGGTGTGGGGTGTCGGTGATATAAAAATGCCCTCTGAGCTGGGATGATTGGTGGTGTTGAGACACTAAACATCCCAGCTCAGAAG
GCACTTTCAGTGAAAGTATCACACAGCTTCTCGGCCACGTCGGCACTCTTTGACGATGACAATCTGGTGTCGCATGCCGGGTTGGTGCCGGTGATGGAAT
TGGCTCACTCGACCGGGGTGGCCGCATTGCTGGCCGAACGGGTCGATCTGGGCACCACCCGGGTCGCTTCCGCCGGAGCCAACCTGGAAGCGAAACTGCT
GACCGTGATCGCCGGGTTATGTTGCGGCGCTGACAGTATCGACGACCTCGACATCGTCCGGGCCGGTGGGCACACCCGCCTGTTCGACCGCGTATACGCC
CCGGCCACGATCGGACAAACCCTGCGGGAGTTCACCCCCGGGCACACCCGACAACTCAACGCCGTGATGACGCGCTCGCTGCCGGCGATGTGTGCCCGGG
CAGGATTGTTACCCACCGACGGTGCCCGCGTGTTCCTCGATATCGATTCCCTGCTGCGCCCGGTCTATGGCTACCAGAAGACGGCGCCTCCTACGGACAC
GCCAAGATCGCCGGACGTGAACTGCTGCGTCGGGGCCTCTCACCGCTGATCGCCACCCTCAGTGCACCCGAGCACCCACCGGTGATCGCCAACGCCTGGC
TGCGCGCCGGGCGCGCCGCCTCCGGCGCCGGAGCAGCAACGATGCTCGCCGAAACCATCGCCACCGCCCGCCGCGCCGGAGCCGCCGGTGAGATCACCGT
GCGCGCGGATGCCGCCTACGGGTCGGCCGAGGTGATGGCTACCTGCCAACGCCTGGGCGCCACGTTCTCGCTGGTCCTGCGGACCAACACCGCGATCACC
CGCGCAATCACCGCCATCGGCGACGACGCCTGGACACCGGTGTCCTATCCCGGGGCGGTCACCGACCCCGACACCGGCGAGTTGATCTCTGATGCCGAAG
TCGCCGAAACCACCTACACGGTCAAACCACTCTCACCGCACCCGATCACCGCCCGACTCATCGTGCGGCGAGTCAAAGCCCATCACCCCGCCGACACCGA
CACCCTGATGCCGGCCTGGCGGTATCACTCGTTTTTCACCAACACCACCGACGACACCGTTACCGCCGACATCAACCACCGCGGCCACGCCGTCATCGAG
ACCGTGTTCGCCGACCTCATCGACGGACCGCTGGCGCATCTTCCCTCCGGCGTTTTCGGCGCCAACGCCGCCTGGCTGGCCCTGACCGCCATCAGCCACA
ACCTCATGCGCACCCTCGCCGCGCTCAGCGCGGCCCCCAGACTACGAGCCGCGCGCGGAGCGACGCTGCGCCGCACGCTCATCGCCGTGCCCGCCCGACT
GGCCCGACCAGCACGAACACCCATCCTGCACCTGCCCCGACACTGGCCATCCCAACACGCATTCACCACCCTGTGGGCCGCGGTGAACACCACCTGACCC
AACACCCCAACACGCCCACCCACGACCAGGAAACCCAGTGAAAAAGCTGACGCAAGATCAGCGAATACCCGACGCCCACAACACGATCAACCACTCACGC
ACACCCCACCACCACTCACCCACACCCCTCCACGGATCCAGG
GCACTTTCAGTGAAAGTATCACACAGCTTCTCGGCCACGTCGGCACTCTTTGACGATGACAATCTGGTGTCGCATGCCGGGTTGGTGCCGGTGATGGAAT
TGGCTCACTCGACCGGGGTGGCCGCATTGCTGGCCGAACGGGTCGATCTGGGCACCACCCGGGTCGCTTCCGCCGGAGCCAACCTGGAAGCGAAACTGCT
GACCGTGATCGCCGGGTTATGTTGCGGCGCTGACAGTATCGACGACCTCGACATCGTCCGGGCCGGTGGGCACACCCGCCTGTTCGACCGCGTATACGCC
CCGGCCACGATCGGACAAACCCTGCGGGAGTTCACCCCCGGGCACACCCGACAACTCAACGCCGTGATGACGCGCTCGCTGCCGGCGATGTGTGCCCGGG
CAGGATTGTTACCCACCGACGGTGCCCGCGTGTTCCTCGATATCGATTCCCTGCTGCGCCCGGTCTATGGCTACCAGAAGACGGCGCCTCCTACGGACAC
GCCAAGATCGCCGGACGTGAACTGCTGCGTCGGGGCCTCTCACCGCTGATCGCCACCCTCAGTGCACCCGAGCACCCACCGGTGATCGCCAACGCCTGGC
TGCGCGCCGGGCGCGCCGCCTCCGGCGCCGGAGCAGCAACGATGCTCGCCGAAACCATCGCCACCGCCCGCCGCGCCGGAGCCGCCGGTGAGATCACCGT
GCGCGCGGATGCCGCCTACGGGTCGGCCGAGGTGATGGCTACCTGCCAACGCCTGGGCGCCACGTTCTCGCTGGTCCTGCGGACCAACACCGCGATCACC
CGCGCAATCACCGCCATCGGCGACGACGCCTGGACACCGGTGTCCTATCCCGGGGCGGTCACCGACCCCGACACCGGCGAGTTGATCTCTGATGCCGAAG
TCGCCGAAACCACCTACACGGTCAAACCACTCTCACCGCACCCGATCACCGCCCGACTCATCGTGCGGCGAGTCAAAGCCCATCACCCCGCCGACACCGA
CACCCTGATGCCGGCCTGGCGGTATCACTCGTTTTTCACCAACACCACCGACGACACCGTTACCGCCGACATCAACCACCGCGGCCACGCCGTCATCGAG
ACCGTGTTCGCCGACCTCATCGACGGACCGCTGGCGCATCTTCCCTCCGGCGTTTTCGGCGCCAACGCCGCCTGGCTGGCCCTGACCGCCATCAGCCACA
ACCTCATGCGCACCCTCGCCGCGCTCAGCGCGGCCCCCAGACTACGAGCCGCGCGCGGAGCGACGCTGCGCCGCACGCTCATCGCCGTGCCCGCCCGACT
GGCCCGACCAGCACGAACACCCATCCTGCACCTGCCCCGACACTGGCCATCCCAACACGCATTCACCACCCTGTGGGCCGCGGTGAACACCACCTGACCC
AACACCCCAACACGCCCACCCACGACCAGGAAACCCAGTGAAAAAGCTGACGCAAGATCAGCGAATACCCGACGCCCACAACACGATCAACCACTCACGC
ACACCCCACCACCACTCACCCACACCCCTCCACGGATCCAGG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1388 bp | 463 aa | 110 | 1497 | + | No |
Chemistry : DDE
ORF sequence :
VKVSHSFSATSALFDDDNLVSHAGLVPVMELAHSTGVAALLAERVDLGTTRVASAGANLEAKLLTVIAGLCCGADSIDDLDIVRAGGHTRLFDRVYAPAT
IGQTLREFTPGHTRQLNAVMTRSLPAMCARAGLLPTDGARVFLDIDSLLRPVYGYQKEDGASYGHAKIAGRELLRRGLSPLIATLSAPEHPPVIANAWLR
AGRAASGAGAATMLAETIATARRAGAAGEITVRADAAYGSAEVMATCQRLGATFSLVLRTNTAITRAITAIGDDAWTPVSYPGAVTDPDTGELISDAEVA
ETTYTVKPLSPHPITARLIVRRVKAHHPADTDTLMPAWRYHSFFTNTTDDTVTADINHRGHAVIETVFADLIDGPLAHLPSGVFGANAAWLALTAISHNL
MRTLAALSAAPRLRAARGATLRRTLIAVPARLARPARTPILHLPRHWPSQHAFTTLWAAVNTT
IGQTLREFTPGHTRQLNAVMTRSLPAMCARAGLLPTDGARVFLDIDSLLRPVYGYQKEDGASYGHAKIAGRELLRRGLSPLIATLSAPEHPPVIANAWLR
AGRAASGAGAATMLAETIATARRAGAAGEITVRADAAYGSAEVMATCQRLGATFSLVLRTNTAITRAITAIGDDAWTPVSYPGAVTDPDTGELISDAEVA
ETTYTVKPLSPHPITARLIVRRVKAHHPADTDTLMPAWRYHSFFTNTTDDTVTADINHRGHAVIETVFADLIDGPLAHLPSGVFGANAAWLALTAISHNL
MRTLAALSAAPRLRAARGATLRRTLIAVPARLARPARTPILHLPRHWPSQHAFTTLWAAVNTT
Blast result :
Comments
ISGosp1 is 58% aa similar to ISMaa1.
The transposase was reconstructed in silico, there is a non programmed frameshift.
The transposase was reconstructed in silico, there is a non programmed frameshift.
References
1] ISfinder annotation (2009)
2] Matsui,T. and Maruhashi,K. (2004) Curr. Microbiol. 48 (2), 130-134
2] Matsui,T. and Maruhashi,K. (2004) Curr. Microbiol. 48 (2), 130-134