ISPelu1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007512 | ND | Pelodictyon luteolum | Chlorobium phaeobacteroides BS1 Pelodictyon luteolum DSM 273 |
DNA section
IS Length : 1742 bp
Ends
IR Length : 15/18
IRL : CCTAAGTTGATCGATTTGCAATAAAAAAAGCCCTCACCTATGGGTGTAAA
IRR : CCTGAATTGATCGATTCGTATCTGACCAGCAGCATCAGCCGGTGAAAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGCGTTTTAT | GAAAA | GAAACAGACC | 5 |
| GCCCAGTTAG | TTTAA | CTTTGTGACA | 5 |
DNA sequence
CCTAAGTTGATCGATTTGCAATAAAAAAAGCCCTCACCTATGGGTGTAAAGTGTTATATTAGCGTGAGTAACGACCAAGTCACCACGTAATAAAACACAA
CCCAGCAGGTGGAGAGCTTTATGGCAAAAGATAAGACGATTAAGGGTAAAAAAGAACAGCAGATTTGCGCCATTTTGCCGAGCGACGACCAGCTCACCGG
CAGGGCCGGTTTGAGCGTCTTCGCACTGTACCTGCGCAACATAGGGCTGTTTCCGATTATTGACCGCCTGTTCGGTACAGTGCGGAAGAATGGCAAGGGC
CTGGCGGTCACCGAGATGTTCGTGCAGATTTTGAGCTTCTTCATGGATGGTACGAGCCGCCATCTGAACTGGTTCGATCATCTTGCCGCTGATGATGCCT
ATGCCGGCCTGCTCGGTACCGGTAGATTGGCTTCGTCGCATGCCGTCAAGCGTTTTATCGGGGCTATCTCCTTCTGTCGGATTTACCTGTTCCGGAGATT
GCTGCAGGATGTGTTTCTCTGGCGCCTGAAGCACACCAGGCCGGAAGTGATCATGCTCGGCATTGATACGACGGTTCTGGACAATGACGATGCCGAGAAG
CGCCATGGGGTGCAACCCACATACAAGAAGGTCAAAGGGTTCCAGCCCTTGCAGATGAACTGGGGCAGGTATGTGGTGGACGCGGTGTTCCGTGGAGGAA
AGAAACACTCGAACCACGGCAATACGGTCAATGAGATGCTGGTGCATATGGTAAGGAAAATCCGGAACGCTTACAGGGAAGAGGTTCCGATCATTGTGCG
CATGGACGCCGGGTTCTTCGACGACGAAGTATTCAAGACCTGTGAGCAACTGCAAATCGGTTATCTGTGCGGCGGCAAGCAGTACAGCAATGTTCTTGAT
GAGGTTGCCGATGCGGTCGACTGGCAATCGTTCAAAAAAGTCGAAACTGACTCAAAAAGCTGGATGTACACCGAATTCATGAGCAGACAAAAGAAATGGA
AGAAAGAGCGCCGGACGATCTTCAGTACGCTCTGGGAAGAGGACGGGCAGTATCTGCTGCAAGGCATATGTCGTGATTCCGTCATCATCACCAATATGGG
CATGGGTGAAAAGATCGATGAGCAACTTGCCAAGATCGGCCGCGAGGACTTGCTCGACGCCGGAAAGCTTCTTGGCCTCTACCACGAAAGGGGAACAGAC
GAACTGACCAACCGTGCATTGAAGACCTTCGGCCATGAGCAGCTACCGTTCAAGCGATTCACTGCAAACTCGGCCTGGTACTACCTGATGGTGCTTGGCA
ACAACCTCTTTGAAGCCTTCAAGGAAGACGTGGCCGAAGCGGTCATTCCGGTGTCGGCTTATGCCGACACCTTCCGCCGCAGGTTCATCGATACAGCCGG
AAAACTGGTGCGCCATGCCGGGAAGCTGGTCATGAAAGTCAACAAGGTTGACTATGTTCGCCTGAAGTTCGACCAGCTGTATGAGAAATGCCGTGTCGGA
CTTCCGCGACTGGAATAAAGCGGCTTGAAGTGCTGAAAAACGACAGAAAACGATGGGATTAGTGCGCCCAACCGATAGGATGCTCAGTGGTAATGGTGTA
TATTCCCCTATCACAAGCATTATGCGGGCGTGTGACGTACGCACAGACCAGAACAAAACGTTAAAACGGTAGCCCTATAGGGACAACCGGGATTTTTTCA
CCGGCTGATGCTGCTGGTCAGATACGAATCGATCAATTCAGG
CCCAGCAGGTGGAGAGCTTTATGGCAAAAGATAAGACGATTAAGGGTAAAAAAGAACAGCAGATTTGCGCCATTTTGCCGAGCGACGACCAGCTCACCGG
CAGGGCCGGTTTGAGCGTCTTCGCACTGTACCTGCGCAACATAGGGCTGTTTCCGATTATTGACCGCCTGTTCGGTACAGTGCGGAAGAATGGCAAGGGC
CTGGCGGTCACCGAGATGTTCGTGCAGATTTTGAGCTTCTTCATGGATGGTACGAGCCGCCATCTGAACTGGTTCGATCATCTTGCCGCTGATGATGCCT
ATGCCGGCCTGCTCGGTACCGGTAGATTGGCTTCGTCGCATGCCGTCAAGCGTTTTATCGGGGCTATCTCCTTCTGTCGGATTTACCTGTTCCGGAGATT
GCTGCAGGATGTGTTTCTCTGGCGCCTGAAGCACACCAGGCCGGAAGTGATCATGCTCGGCATTGATACGACGGTTCTGGACAATGACGATGCCGAGAAG
CGCCATGGGGTGCAACCCACATACAAGAAGGTCAAAGGGTTCCAGCCCTTGCAGATGAACTGGGGCAGGTATGTGGTGGACGCGGTGTTCCGTGGAGGAA
AGAAACACTCGAACCACGGCAATACGGTCAATGAGATGCTGGTGCATATGGTAAGGAAAATCCGGAACGCTTACAGGGAAGAGGTTCCGATCATTGTGCG
CATGGACGCCGGGTTCTTCGACGACGAAGTATTCAAGACCTGTGAGCAACTGCAAATCGGTTATCTGTGCGGCGGCAAGCAGTACAGCAATGTTCTTGAT
GAGGTTGCCGATGCGGTCGACTGGCAATCGTTCAAAAAAGTCGAAACTGACTCAAAAAGCTGGATGTACACCGAATTCATGAGCAGACAAAAGAAATGGA
AGAAAGAGCGCCGGACGATCTTCAGTACGCTCTGGGAAGAGGACGGGCAGTATCTGCTGCAAGGCATATGTCGTGATTCCGTCATCATCACCAATATGGG
CATGGGTGAAAAGATCGATGAGCAACTTGCCAAGATCGGCCGCGAGGACTTGCTCGACGCCGGAAAGCTTCTTGGCCTCTACCACGAAAGGGGAACAGAC
GAACTGACCAACCGTGCATTGAAGACCTTCGGCCATGAGCAGCTACCGTTCAAGCGATTCACTGCAAACTCGGCCTGGTACTACCTGATGGTGCTTGGCA
ACAACCTCTTTGAAGCCTTCAAGGAAGACGTGGCCGAAGCGGTCATTCCGGTGTCGGCTTATGCCGACACCTTCCGCCGCAGGTTCATCGATACAGCCGG
AAAACTGGTGCGCCATGCCGGGAAGCTGGTCATGAAAGTCAACAAGGTTGACTATGTTCGCCTGAAGTTCGACCAGCTGTATGAGAAATGCCGTGTCGGA
CTTCCGCGACTGGAATAAAGCGGCTTGAAGTGCTGAAAAACGACAGAAAACGATGGGATTAGTGCGCCCAACCGATAGGATGCTCAGTGGTAATGGTGTA
TATTCCCCTATCACAAGCATTATGCGGGCGTGTGACGTACGCACAGACCAGAACAAAACGTTAAAACGGTAGCCCTATAGGGACAACCGGGATTTTTTCA
CCGGCTGATGCTGCTGGTCAGATACGAATCGATCAATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1399 bp | 465 aa | 120 | 1518 | + | No |
Chemistry : DDE
ORF sequence :
AKDKTIKGKKEQQICAILPSDDQLTGRAGLSVFALYLRNIGLFPIIDRLFGTVRKNGKGLAVTEMFVQILSFFMDGTSRHLNWFDHLAADDAYAGLLGTG
RLASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEKRHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHGN
TVNEMLVHMVRKIRNAYREEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVETDSKSWMYTEFMSRQKKWKKERRTIF
STLWEEDGQYLLQGICRDSVIITNMGMGEKIDEQLAKIGREDLLDAGKLLGLYHERGTDELTNRALKTFGHEQLPFKRFTANSAWYYLMVLGNNLFEAFK
EDVAEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKFDQLYEKCRVGLPRLE
RLASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEKRHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHGN
TVNEMLVHMVRKIRNAYREEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVETDSKSWMYTEFMSRQKKWKKERRTIF
STLWEEDGQYLLQGICRDSVIITNMGMGEKIDEQLAKIGREDLLDAGKLLGLYHERGTDELTNRALKTFGHEQLPFKRFTANSAWYYLMVLGNNLFEAFK
EDVAEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKFDQLYEKCRVGLPRLE
Blast result :
Comments
ISPelu1 is 54% aa similar to ISLar2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank.