ISDau2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012108 ND Desulfobacterium autotrophicum
Desulfobacterium autotrophicum HRM2
DNA section
IS Length : 1855 bp

Ends


IR Length : 14/17

IRL : CCCCAATCCACCACCTAAAAAAAAGAAAAACCCCGTTGCGCTTGATGGTT
IRR : CCTAAATCCACCGCCTATTTTTTTTATACCCCTCCAAAAACGATTCGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AAACCGTTGTTTTTCTGATTTACCT5
AGACATTACGGATTCTCCTCAAAT4
ATCTTTCCTCCCTTTTTTATCTGT4
GATTTGAAATGCAAAGTGTCGTTG4

DNA sequence

CCCCAATCCACCACCTAAAAAAAAGAAAAACCCCGTTGCGCTTGATGGTTCAAGCAGATAGAGTCTTTGTGCGAACAAAAAACTATCATCAACGGGGTGA
AACAAGTTATGACACAAGGCGTGCTTCCATTCAAGTATGAAGAAGAAAAAACTCAGACCGGCATGACCGCATTGGCTGGCCTGCCCGTCTATCTCGACTT
GGCCAAAGTAATCGGGTTGTCCAAATCCATCCAAAAACATCTGAAGGTAAGAAAGAACTCGCAAGGCTGGACTGATTCCCAGATGGTTTTATCTTTGGTG
CTGCTCAATCTTGCCGGAGGAGACTGTGTTGATGATTTAAAGATACTGGAGGCGGATGAAGGGTTCTGCCAAATATTGCGGAAATCAGAAACGCATGGTT
TGAGTCGTAAGGTTCGCCGAACTATAGAGAGTAGGTGGCGGAAGGAAAAAAAACGTTCTGTGCCGTCCCCGTCAGCTGTCTTCAGGTATTTGTCCAAATT
TCATGATGCTGAACAGGAGGATGCCCGAAAGAAGTCAGATGTTAAAGCATTTATCCCCGCCGCTAATGACTTCCTGAAGGGGTTTGGAAAGATTAATAAA
GATATGATCGCTGGCTTGAATACAGTAAGCGTCGAGACAACGGCCACCTTGGACATGGATGCCACCCTGGCTCAAACCATGAAAGAGACAGCTTCTTATT
GTTATAAAGGGTTCAAGGCTTACCAACCTTTCAACACATGGTGGTTTGAGCAAGGAATTATTCTTCACACAGAATTCCGGGACGGTAACGTGCCCGCTGG
TTATGAACAGTTAAGGGTTTTTAAGGAAGCCTTGGACTGTCTTCCGAGCAATGTGGAAAAGGTGAAGCTCCGTTCAGATACTGCTGCTTACCAGCACGAT
CTTTTACGGTACTGTGAAAAAGGTGAAAATAAACGATTTGGTAGAATCGAATTTGCCATCGGCTGTAATGTGACTAAGGCATTCAAAATAGCGGTAGCTC
AAGTGCCAGATGCCCAATGGCAGCCGATCTATAAAAGGGAGAAAGGTTTACAGTTAAAAACCGGTAGCGAGTGGGCCGAAGTGTGCTTTGTTCCCAACGA
ACTGTGCTATAGCAAAGATGCTCCGGTATACAGGTATCTTGCCAAACGGCAGCGCCTGGTTGAACAACAACCTTTGCCCGGTATGAATGATGATAAACAG
CTTAAGCTTCCCTTCCCGACAATGGAAATGGATGAAAGCCGATACAAGGTATTTGGTGTCGTTACCAATATCAAATATACACAGATGAACGGGGAGAATG
TGATCCACTGGCTTCATGAACGATGCGGTAAGAGTGAAGAGGTTCATGCGGTGATGAAAGACGATCTGGCCGGTGGAAAAATGCCATCATCTGACTTTGG
TACAAATGCTGCGTGGTGGTGGATCATGATAATTGCCTTAAACCTGAATGTGATGATGAAAAATCTGGCGTTGGCTCCTTCGATGAAGACGAAACGGATG
AAGGCCATCAGGTTTTCACTTGTCAATATCCCGGGGAGAGTAGTTAAACGATCCCGTACTCTGTTTTTGCGTTTATCTAAAGGGCACCCATCTTACGATC
TCTTGGTTGAGGCGCGCAGAAAAATTGCAATGCTTTTCGGTTCATGGGCACCATCTGGATAACTATATGACAAAGGTACACACTAAAAATCTAATTTTTC
CGGTCCGCCAAGGGATATCTATACCCAAAATTTGCCCAGATCAGAGGGACGGCCACAAAAAGACCAAGCCCCCACCGGAATAAGCTCCAGCCGCGAAAAA
AAATTCCCCGAATCGTTTTTGGAGGGGTATAAAAAAAATAGGCGGTGGATTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1554 bp517 aa1091662+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQGVLPFKYEEEKTQTGMTALAGLPVYLDLAKVIGLSKSIQKHLKVRKNSQGWTDSQMVLSLVLLNLAGGDCVDDLKILEADEGFCQILRKSETHGLSR
KVRRTIESRWRKEKKRSVPSPSAVFRYLSKFHDAEQEDARKKSDVKAFIPAANDFLKGFGKINKDMIAGLNTVSVETTATLDMDATLAQTMKETASYCYK
GFKAYQPFNTWWFEQGIILHTEFRDGNVPAGYEQLRVFKEALDCLPSNVEKVKLRSDTAAYQHDLLRYCEKGENKRFGRIEFAIGCNVTKAFKIAVAQVP
DAQWQPIYKREKGLQLKTGSEWAEVCFVPNELCYSKDAPVYRYLAKRQRLVEQQPLPGMNDDKQLKLPFPTMEMDESRYKVFGVVTNIKYTQMNGENVIH
WLHERCGKSEEVHAVMKDDLAGGKMPSSDFGTNAAWWWIMIIALNLNVMMKNLALAPSMKTKRMKAIRFSLVNIPGRVVKRSRTLFLRLSKGHPSYDLLV
EARRKIAMLFGSWAPSG

 

Blast result :
Comments
ISDau2 is 43% aa similar to ISLsp3.
References
1] ISfinder annotation (2009)
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. (2009) Environ. Microbiol. In press