ISDau2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012108 | ND | Desulfobacterium autotrophicum | Desulfobacterium autotrophicum HRM2 |
DNA section
IS Length : 1855 bp
Ends
IR Length : 14/17
IRL : CCCCAATCCACCACCTAAAAAAAAGAAAAACCCCGTTGCGCTTGATGGTT
IRR : CCTAAATCCACCGCCTATTTTTTTTATACCCCTCCAAAAACGATTCGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACCGTTGT | TTTTC | TGATTTACCT | 5 |
AGACATTACG | GATT | CTCCTCAAAT | 4 |
ATCTTTCCTC | CCTT | TTTTATCTGT | 4 |
GATTTGAAAT | GCAA | AGTGTCGTTG | 4 |
DNA sequence
CCCCAATCCACCACCTAAAAAAAAGAAAAACCCCGTTGCGCTTGATGGTTCAAGCAGATAGAGTCTTTGTGCGAACAAAAAACTATCATCAACGGGGTGA
AACAAGTTATGACACAAGGCGTGCTTCCATTCAAGTATGAAGAAGAAAAAACTCAGACCGGCATGACCGCATTGGCTGGCCTGCCCGTCTATCTCGACTT
GGCCAAAGTAATCGGGTTGTCCAAATCCATCCAAAAACATCTGAAGGTAAGAAAGAACTCGCAAGGCTGGACTGATTCCCAGATGGTTTTATCTTTGGTG
CTGCTCAATCTTGCCGGAGGAGACTGTGTTGATGATTTAAAGATACTGGAGGCGGATGAAGGGTTCTGCCAAATATTGCGGAAATCAGAAACGCATGGTT
TGAGTCGTAAGGTTCGCCGAACTATAGAGAGTAGGTGGCGGAAGGAAAAAAAACGTTCTGTGCCGTCCCCGTCAGCTGTCTTCAGGTATTTGTCCAAATT
TCATGATGCTGAACAGGAGGATGCCCGAAAGAAGTCAGATGTTAAAGCATTTATCCCCGCCGCTAATGACTTCCTGAAGGGGTTTGGAAAGATTAATAAA
GATATGATCGCTGGCTTGAATACAGTAAGCGTCGAGACAACGGCCACCTTGGACATGGATGCCACCCTGGCTCAAACCATGAAAGAGACAGCTTCTTATT
GTTATAAAGGGTTCAAGGCTTACCAACCTTTCAACACATGGTGGTTTGAGCAAGGAATTATTCTTCACACAGAATTCCGGGACGGTAACGTGCCCGCTGG
TTATGAACAGTTAAGGGTTTTTAAGGAAGCCTTGGACTGTCTTCCGAGCAATGTGGAAAAGGTGAAGCTCCGTTCAGATACTGCTGCTTACCAGCACGAT
CTTTTACGGTACTGTGAAAAAGGTGAAAATAAACGATTTGGTAGAATCGAATTTGCCATCGGCTGTAATGTGACTAAGGCATTCAAAATAGCGGTAGCTC
AAGTGCCAGATGCCCAATGGCAGCCGATCTATAAAAGGGAGAAAGGTTTACAGTTAAAAACCGGTAGCGAGTGGGCCGAAGTGTGCTTTGTTCCCAACGA
ACTGTGCTATAGCAAAGATGCTCCGGTATACAGGTATCTTGCCAAACGGCAGCGCCTGGTTGAACAACAACCTTTGCCCGGTATGAATGATGATAAACAG
CTTAAGCTTCCCTTCCCGACAATGGAAATGGATGAAAGCCGATACAAGGTATTTGGTGTCGTTACCAATATCAAATATACACAGATGAACGGGGAGAATG
TGATCCACTGGCTTCATGAACGATGCGGTAAGAGTGAAGAGGTTCATGCGGTGATGAAAGACGATCTGGCCGGTGGAAAAATGCCATCATCTGACTTTGG
TACAAATGCTGCGTGGTGGTGGATCATGATAATTGCCTTAAACCTGAATGTGATGATGAAAAATCTGGCGTTGGCTCCTTCGATGAAGACGAAACGGATG
AAGGCCATCAGGTTTTCACTTGTCAATATCCCGGGGAGAGTAGTTAAACGATCCCGTACTCTGTTTTTGCGTTTATCTAAAGGGCACCCATCTTACGATC
TCTTGGTTGAGGCGCGCAGAAAAATTGCAATGCTTTTCGGTTCATGGGCACCATCTGGATAACTATATGACAAAGGTACACACTAAAAATCTAATTTTTC
CGGTCCGCCAAGGGATATCTATACCCAAAATTTGCCCAGATCAGAGGGACGGCCACAAAAAGACCAAGCCCCCACCGGAATAAGCTCCAGCCGCGAAAAA
AAATTCCCCGAATCGTTTTTGGAGGGGTATAAAAAAAATAGGCGGTGGATTTAGG
AACAAGTTATGACACAAGGCGTGCTTCCATTCAAGTATGAAGAAGAAAAAACTCAGACCGGCATGACCGCATTGGCTGGCCTGCCCGTCTATCTCGACTT
GGCCAAAGTAATCGGGTTGTCCAAATCCATCCAAAAACATCTGAAGGTAAGAAAGAACTCGCAAGGCTGGACTGATTCCCAGATGGTTTTATCTTTGGTG
CTGCTCAATCTTGCCGGAGGAGACTGTGTTGATGATTTAAAGATACTGGAGGCGGATGAAGGGTTCTGCCAAATATTGCGGAAATCAGAAACGCATGGTT
TGAGTCGTAAGGTTCGCCGAACTATAGAGAGTAGGTGGCGGAAGGAAAAAAAACGTTCTGTGCCGTCCCCGTCAGCTGTCTTCAGGTATTTGTCCAAATT
TCATGATGCTGAACAGGAGGATGCCCGAAAGAAGTCAGATGTTAAAGCATTTATCCCCGCCGCTAATGACTTCCTGAAGGGGTTTGGAAAGATTAATAAA
GATATGATCGCTGGCTTGAATACAGTAAGCGTCGAGACAACGGCCACCTTGGACATGGATGCCACCCTGGCTCAAACCATGAAAGAGACAGCTTCTTATT
GTTATAAAGGGTTCAAGGCTTACCAACCTTTCAACACATGGTGGTTTGAGCAAGGAATTATTCTTCACACAGAATTCCGGGACGGTAACGTGCCCGCTGG
TTATGAACAGTTAAGGGTTTTTAAGGAAGCCTTGGACTGTCTTCCGAGCAATGTGGAAAAGGTGAAGCTCCGTTCAGATACTGCTGCTTACCAGCACGAT
CTTTTACGGTACTGTGAAAAAGGTGAAAATAAACGATTTGGTAGAATCGAATTTGCCATCGGCTGTAATGTGACTAAGGCATTCAAAATAGCGGTAGCTC
AAGTGCCAGATGCCCAATGGCAGCCGATCTATAAAAGGGAGAAAGGTTTACAGTTAAAAACCGGTAGCGAGTGGGCCGAAGTGTGCTTTGTTCCCAACGA
ACTGTGCTATAGCAAAGATGCTCCGGTATACAGGTATCTTGCCAAACGGCAGCGCCTGGTTGAACAACAACCTTTGCCCGGTATGAATGATGATAAACAG
CTTAAGCTTCCCTTCCCGACAATGGAAATGGATGAAAGCCGATACAAGGTATTTGGTGTCGTTACCAATATCAAATATACACAGATGAACGGGGAGAATG
TGATCCACTGGCTTCATGAACGATGCGGTAAGAGTGAAGAGGTTCATGCGGTGATGAAAGACGATCTGGCCGGTGGAAAAATGCCATCATCTGACTTTGG
TACAAATGCTGCGTGGTGGTGGATCATGATAATTGCCTTAAACCTGAATGTGATGATGAAAAATCTGGCGTTGGCTCCTTCGATGAAGACGAAACGGATG
AAGGCCATCAGGTTTTCACTTGTCAATATCCCGGGGAGAGTAGTTAAACGATCCCGTACTCTGTTTTTGCGTTTATCTAAAGGGCACCCATCTTACGATC
TCTTGGTTGAGGCGCGCAGAAAAATTGCAATGCTTTTCGGTTCATGGGCACCATCTGGATAACTATATGACAAAGGTACACACTAAAAATCTAATTTTTC
CGGTCCGCCAAGGGATATCTATACCCAAAATTTGCCCAGATCAGAGGGACGGCCACAAAAAGACCAAGCCCCCACCGGAATAAGCTCCAGCCGCGAAAAA
AAATTCCCCGAATCGTTTTTGGAGGGGTATAAAAAAAATAGGCGGTGGATTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1554 bp | 517 aa | 109 | 1662 | + | No |
Chemistry : DDE
ORF sequence :
MTQGVLPFKYEEEKTQTGMTALAGLPVYLDLAKVIGLSKSIQKHLKVRKNSQGWTDSQMVLSLVLLNLAGGDCVDDLKILEADEGFCQILRKSETHGLSR
KVRRTIESRWRKEKKRSVPSPSAVFRYLSKFHDAEQEDARKKSDVKAFIPAANDFLKGFGKINKDMIAGLNTVSVETTATLDMDATLAQTMKETASYCYK
GFKAYQPFNTWWFEQGIILHTEFRDGNVPAGYEQLRVFKEALDCLPSNVEKVKLRSDTAAYQHDLLRYCEKGENKRFGRIEFAIGCNVTKAFKIAVAQVP
DAQWQPIYKREKGLQLKTGSEWAEVCFVPNELCYSKDAPVYRYLAKRQRLVEQQPLPGMNDDKQLKLPFPTMEMDESRYKVFGVVTNIKYTQMNGENVIH
WLHERCGKSEEVHAVMKDDLAGGKMPSSDFGTNAAWWWIMIIALNLNVMMKNLALAPSMKTKRMKAIRFSLVNIPGRVVKRSRTLFLRLSKGHPSYDLLV
EARRKIAMLFGSWAPSG
KVRRTIESRWRKEKKRSVPSPSAVFRYLSKFHDAEQEDARKKSDVKAFIPAANDFLKGFGKINKDMIAGLNTVSVETTATLDMDATLAQTMKETASYCYK
GFKAYQPFNTWWFEQGIILHTEFRDGNVPAGYEQLRVFKEALDCLPSNVEKVKLRSDTAAYQHDLLRYCEKGENKRFGRIEFAIGCNVTKAFKIAVAQVP
DAQWQPIYKREKGLQLKTGSEWAEVCFVPNELCYSKDAPVYRYLAKRQRLVEQQPLPGMNDDKQLKLPFPTMEMDESRYKVFGVVTNIKYTQMNGENVIH
WLHERCGKSEEVHAVMKDDLAGGKMPSSDFGTNAAWWWIMIIALNLNVMMKNLALAPSMKTKRMKAIRFSLVNIPGRVVKRSRTLFLRLSKGHPSYDLLV
EARRKIAMLFGSWAPSG
Blast result :
Comments
ISDau2 is 43% aa similar to ISLsp3.
References
1] ISfinder annotation (2009)
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. (2009) Environ. Microbiol. In press
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. (2009) Environ. Microbiol. In press