ISMyma7
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010612 | ND | Mycobacterium marinum | Mycobacterium marinum M |
DNA section
IS Length : 1694 bp
Ends
IR Length : 11/17
IRL : CCCGGATTTTTCGCGGATTGTTGCCTGTTTCGGTGTGTAGATAGGCGAAA
IRR : CCTCGATTTTGCATCGAATTGATGCTGAGGTCACTCAGCCGTTGAATTAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTCCGGCGG | CTAG | CCGGGCGGAC | 4 |
| TGCCGCCTAG | CTAATCCGGT | 0 |
DNA sequence
CCCGGATTTTTCGCGGATTGTTGCCTGTTTCGGTGTGTAGATAGGCGAAAGTGCCTGTCCTGCAACGAATAATGAGACTGCTGAAGGTCCATGATTCCGA
GCGGGAGGGCACTTTCTAGGTGGAGAGTAGCGCAGCGGTTTCGCGGGTGAAAGTGTCGGCGGGCGGGCGTGGCGTGGTATCACATGCCGGGATGGGCCTG
TTGCGCGAGTTGGCGGACCTGACCGGGTTATCGGCGCAGGTCACTGCCGCGCCGGCAGACACCTACCGGGGCCCGTGGGTGTACGCGCCGGGGGATATCT
TCGCAGATCTGGCGGCCGCGGTCGCTGATGGCGCCGATTGCATCGACGGCGTCGGGCAACTGTGTGGGGACCGTGAGCACGTGTTCGGAGCGAAGGCCTC
GACCACCACGATGTGGCGGCTGGTCGACCAGCGGATCGACGCCGCACACCTACCCGGAATCCATGCAGCCCGAGCGGCCGCGCGGGCGGCGGCCTGGGCC
GCCGGCGCCGCCCCGGCACCGGGTGAATGGCTGCACATCGACATCGACGCCACCCTGGTCATCGATCACTCCGACAACAAAGAGCTGGCGACACCGACCT
GGAAGAAGTCGTTCGGCGTGCATCCACTGCTGGCGTTTCTCGACCGACCCGAGATCGCCGGTGGGGAAGCGCTGGCCGGGCTGCTGCACACCGGCCGTGC
CGGTTCCAACACCGCCGCCGACCACATCACCGTACTGGACCAAGCCTTGGCATCGTTGCCACCGGCGTGGCGCCCCGATCCTGGTCGTGGTGGCGATCCA
GACGCGCCGAAGGTACTGGTGCGCTGCGATTCGGCCGGGTCCACCCACGCGTTCGCCGACGCGTGCCGCGCCGCCGGGGTGGGGTTCTCTTTCGGCTACC
CGGTGGATTGGCGGGTGCAGGACGCGGTGGACACTCTCACCCTCGGCGACGCCTGGTATCCGGGGATCGACACCGACGGCGGTATCCGCGACGGGGCGTG
GGTCGCCGAAGCCACCGGGCTGGTCAACCTGTCCGCGTGGCCGGCCGGCACGAGGTTGATCCTGCGCAAGGAACGCCCGCATCCCGGCGCGCAGTTGCGG
TTCACCGACGCCGACGGGATGCGGGTCACCGCGTTCATCACCGACACCGGCCCCGCTGCCGTGCCAGGCCAGGTCGCCGGCCTGGAACTACGGCACCGTC
AGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAGAGCACCGGCCTGCGTAACCTGCCATGCCACGCCTTCTCGGCCAATGCCGCCTGGCAGGAGAT
CATCCTGGCCGCCGCCGATCTCATCACCTGGACCCGTCTGATCGGATTCACCACCCAACCCGAACTCGCCCGCGTGGAGATCACCACGTTCCGCTACCGG
GTCTTGCACGTCGCGGCCCGCATCACCCGCGGAGCCCGGCAAGTCCGGCTGTGTATCGACGCGACCTGGCGCTGGGCGGCGATGATCGCCACCGCCTGGC
AGGCCATCCGCACCGCCTTCGGATAGAGCCCTCACCACCCGACCGACCGACACGGAAAGACCCACCGTCCCAAGGAAAGCCCGCCCCACCCCGCGACACG
CGACACCTCTCCACGCCAGCACGCGACAATACCTACCCAACAACATAATTCAACGGCTGAGTGACCTCAGCATCAATTCGATGCAAAATCGAGG
GCGGGAGGGCACTTTCTAGGTGGAGAGTAGCGCAGCGGTTTCGCGGGTGAAAGTGTCGGCGGGCGGGCGTGGCGTGGTATCACATGCCGGGATGGGCCTG
TTGCGCGAGTTGGCGGACCTGACCGGGTTATCGGCGCAGGTCACTGCCGCGCCGGCAGACACCTACCGGGGCCCGTGGGTGTACGCGCCGGGGGATATCT
TCGCAGATCTGGCGGCCGCGGTCGCTGATGGCGCCGATTGCATCGACGGCGTCGGGCAACTGTGTGGGGACCGTGAGCACGTGTTCGGAGCGAAGGCCTC
GACCACCACGATGTGGCGGCTGGTCGACCAGCGGATCGACGCCGCACACCTACCCGGAATCCATGCAGCCCGAGCGGCCGCGCGGGCGGCGGCCTGGGCC
GCCGGCGCCGCCCCGGCACCGGGTGAATGGCTGCACATCGACATCGACGCCACCCTGGTCATCGATCACTCCGACAACAAAGAGCTGGCGACACCGACCT
GGAAGAAGTCGTTCGGCGTGCATCCACTGCTGGCGTTTCTCGACCGACCCGAGATCGCCGGTGGGGAAGCGCTGGCCGGGCTGCTGCACACCGGCCGTGC
CGGTTCCAACACCGCCGCCGACCACATCACCGTACTGGACCAAGCCTTGGCATCGTTGCCACCGGCGTGGCGCCCCGATCCTGGTCGTGGTGGCGATCCA
GACGCGCCGAAGGTACTGGTGCGCTGCGATTCGGCCGGGTCCACCCACGCGTTCGCCGACGCGTGCCGCGCCGCCGGGGTGGGGTTCTCTTTCGGCTACC
CGGTGGATTGGCGGGTGCAGGACGCGGTGGACACTCTCACCCTCGGCGACGCCTGGTATCCGGGGATCGACACCGACGGCGGTATCCGCGACGGGGCGTG
GGTCGCCGAAGCCACCGGGCTGGTCAACCTGTCCGCGTGGCCGGCCGGCACGAGGTTGATCCTGCGCAAGGAACGCCCGCATCCCGGCGCGCAGTTGCGG
TTCACCGACGCCGACGGGATGCGGGTCACCGCGTTCATCACCGACACCGGCCCCGCTGCCGTGCCAGGCCAGGTCGCCGGCCTGGAACTACGGCACCGTC
AGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAGAGCACCGGCCTGCGTAACCTGCCATGCCACGCCTTCTCGGCCAATGCCGCCTGGCAGGAGAT
CATCCTGGCCGCCGCCGATCTCATCACCTGGACCCGTCTGATCGGATTCACCACCCAACCCGAACTCGCCCGCGTGGAGATCACCACGTTCCGCTACCGG
GTCTTGCACGTCGCGGCCCGCATCACCCGCGGAGCCCGGCAAGTCCGGCTGTGTATCGACGCGACCTGGCGCTGGGCGGCGATGATCGCCACCGCCTGGC
AGGCCATCCGCACCGCCTTCGGATAGAGCCCTCACCACCCGACCGACCGACACGGAAAGACCCACCGTCCCAAGGAAAGCCCGCCCCACCCCGCGACACG
CGACACCTCTCCACGCCAGCACGCGACAATACCTACCCAACAACATAATTCAACGGCTGAGTGACCTCAGCATCAATTCGATGCAAAATCGAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1407 bp | 468 aa | 120 | 1526 | + | No |
Chemistry : DDE
ORF sequence :
MESSAAVSRVKVSAGGRGVVSHAGMGLLRELADLTGLSAQVTAAPADTYRGPWVYAPGDIFADLAAAVADGADCIDGVGQLCGDREHVFGAKASTTTMWR
LVDQRIDAAHLPGIHAARAAARAAAWAAGAAPAPGEWLHIDIDATLVIDHSDNKELATPTWKKSFGVHPLLAFLDRPEIAGGEALAGLLHTGRAGSNTAA
DHITVLDQALASLPPAWRPDPGRGGDPDAPKVLVRCDSAGSTHAFADACRAAGVGFSFGYPVDWRVQDAVDTLTLGDAWYPGIDTDGGIRDGAWVAEATG
LVNLSAWPAGTRLILRKERPHPGAQLRFTDADGMRVTAFITDTGPAAVPGQVAGLELRHRQHARVEDRIRELKSTGLRNLPCHAFSANAAWQEIILAAAD
LITWTRLIGFTTQPELARVEITTFRYRVLHVAARITRGARQVRLCIDATWRWAAMIATAWQAIRTAFG
LVDQRIDAAHLPGIHAARAAARAAAWAAGAAPAPGEWLHIDIDATLVIDHSDNKELATPTWKKSFGVHPLLAFLDRPEIAGGEALAGLLHTGRAGSNTAA
DHITVLDQALASLPPAWRPDPGRGGDPDAPKVLVRCDSAGSTHAFADACRAAGVGFSFGYPVDWRVQDAVDTLTLGDAWYPGIDTDGGIRDGAWVAEATG
LVNLSAWPAGTRLILRKERPHPGAQLRFTDADGMRVTAFITDTGPAAVPGQVAGLELRHRQHARVEDRIRELKSTGLRNLPCHAFSANAAWQEIILAAAD
LITWTRLIGFTTQPELARVEITTFRYRVLHVAARITRGARQVRLCIDATWRWAAMIATAWQAIRTAFG
Blast result :
Comments
ISMyma7 is 88% aa similar to ISMsm3.
References
1] Stinear Tim. (2006) Direct submission.
2] Stinear,T.P., Seemann,T., Harrison,P.F., Jenkin,G.A., Davies,J.K., Johnson,P.D., Abdellah,Z., Arrowsmith,C., Chillingworth,T., Churcher,C., Clarke,K., Cronin,A., Davis,P., Goodhead,I., Holroyd,N., Jagels,K., Lord,A., Moule,S., Mungall,K., Norbertczak,H., Quail,M.A., Rabbinowitsch,E., Walker,D., White,B., Whitehead,S., Small,P.L., Brosch,R., Ramakrishnan,L., Fischbach,M.A., Parkhill,J. and Cole,S.T. (2008) in press.
2] Stinear,T.P., Seemann,T., Harrison,P.F., Jenkin,G.A., Davies,J.K., Johnson,P.D., Abdellah,Z., Arrowsmith,C., Chillingworth,T., Churcher,C., Clarke,K., Cronin,A., Davis,P., Goodhead,I., Holroyd,N., Jagels,K., Lord,A., Moule,S., Mungall,K., Norbertczak,H., Quail,M.A., Rabbinowitsch,E., Walker,D., White,B., Whitehead,S., Small,P.L., Brosch,R., Ramakrishnan,L., Fischbach,M.A., Parkhill,J. and Cole,S.T. (2008) in press.