ISCur1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010545 | ND | Corynebacterium urealyticum | Corynebacterium urealyticum DSM 7109 |
DNA section
IS Length : 1627 bp
Ends
IR Length : 11/13
IRL : CCTCGAGATTTCACGCGTGGGGGCGGGCGGGCGCGTGCCGTGACGGAGAA
IRR : CCTCGATGTTTCATCGAAGGCCGTCAGCTGGTGCAGACGGGTGTCACGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCCGAGCC | CTAG | ACTCGGCGAC | 4 |
DNA sequence
CCTCGAGATTTCACGCGTGGGGGCGGGCGGGCGCGTGCCGTGACGGAGAAAGGTGCTCCTGACCTGGGATGATGCGACTTGTCTAGAGAACACATCGTCA
CCCAGAAGGAGCACCTTTCAGGTGAAGCACTCTACCCGTTCCTACCCGCGAGTCCACGTGGACACAGCACGTTCGGGCGCGGTCGCCCAGGCCGGTGGGG
TGCTGCTGACCCGCGCCGCCGAGGCCACCGGTCTGACCGCCTCGCTCAGGGCCGAGTTGAGCACCTGGCGCAAGCCGTCGGCGGTGCACGACCCGGGCAA
GATCACCAGTGATCTCGCGCTGTCGTTGGCGCTGGGTGGGGACTGCCTGGCCGACCTGGGTCTCCTGCGCGCCGCGCCCGGCGTGTACGGCAACGTCGCC
TCCGAGGCCACGGTCTCCCGGACCCTGGGGGCTCTGGCCGCTGACGCGGACACCGCGGTCCGGGCCATCAACCGGGCCCGCGCATCAGCTCGCCAGCGCG
CCTGGGCGATGGCCGGTGATGCCGCCCCTGGTCACGGTGCCACCGCGGCGGACCCGTTGGTCATCGACGTCGACGCCACCATCGTGATCGCGCACAGCGA
GAAGGAGCAGGCCGCCGGCACCCACAAGCGGACGTTCGGGTTCCACCCGCTGCTGGCGTTCCTCGACCACGGCCCGGACGGCACCGGAGAACCGTTGGCG
ATCCTGCTGCGCCCGGGCAACGCCGGGTCCAACACCGCCACCGACCACATCACCATCGCGCGTGACGCGCAGGCCCAGCTGCCCGGTGTCAACCCGTCCC
GCCCGGGGAAGAAGGTCTTGATCCGTGCCGACGGCGCCGGTGGCACCAAGGACTTCACCACCTGGGCTCACCGTCGCGGCGTGCAGTACTCGGTCGGGTT
CACCCTGCCCGGGCACACCCCCGACTTACTGGCCAAGATTCCCCAGGACGTGTGGGCCCCGGCGTACGACACCGAGGGCAGGGTCCGTCCCGGCGCGGAC
GTGGCCGAGCTCACCGGGCTGCTCACGCTGACCGGGTGGCCACCCGGGATGCGGGTCATCGCCCGCCGCGAACGGCCCCATCCCGGCGCCCAGCTGCGCT
TCGAGGACGTCGACGGGTACCGCATCACCGCGTTCGCGACCAACACCGTCCGTGGCCAGCTGGCCGACCTCGAGCTGCGCCACCGCCGACGTGCCCGGGC
CGAGGACCGGATCCGGATCGCCAAGGACACCGGCCTTGCCAACCTGCCCCTGCACGGCTTCGACCAGAACCGGATCTGGTGCCAGCTCGTGCTGATGGCC
CTGGAGATGACCGCCTGGACCCAGCTGCTCGCCTTCACCGGCCACGCCGCCCGACGGTGGGAACCCAAGCGGCTACGACACCGCGTCTTCACCATCCCCG
CGGCCCTGGCCCGCACCGGCCGCCGGGTCCGCCTGCACCTCAAGGCCGACGCCGCGTACGCCCAGCTCGTCCTGCCCCGACCAGCCCGCACCATCCCTCG
GCACATGGAACCCGACGCCCCCGGGCGCCCTCCGGGCCCCTATCGTACCTGACTGCCAGAATCAGCCCCCGACGGTCACCGTGACACCCGTCTGCACCAG
CTGACGGCCTTCGATGAAACATCGAGG
CCCAGAAGGAGCACCTTTCAGGTGAAGCACTCTACCCGTTCCTACCCGCGAGTCCACGTGGACACAGCACGTTCGGGCGCGGTCGCCCAGGCCGGTGGGG
TGCTGCTGACCCGCGCCGCCGAGGCCACCGGTCTGACCGCCTCGCTCAGGGCCGAGTTGAGCACCTGGCGCAAGCCGTCGGCGGTGCACGACCCGGGCAA
GATCACCAGTGATCTCGCGCTGTCGTTGGCGCTGGGTGGGGACTGCCTGGCCGACCTGGGTCTCCTGCGCGCCGCGCCCGGCGTGTACGGCAACGTCGCC
TCCGAGGCCACGGTCTCCCGGACCCTGGGGGCTCTGGCCGCTGACGCGGACACCGCGGTCCGGGCCATCAACCGGGCCCGCGCATCAGCTCGCCAGCGCG
CCTGGGCGATGGCCGGTGATGCCGCCCCTGGTCACGGTGCCACCGCGGCGGACCCGTTGGTCATCGACGTCGACGCCACCATCGTGATCGCGCACAGCGA
GAAGGAGCAGGCCGCCGGCACCCACAAGCGGACGTTCGGGTTCCACCCGCTGCTGGCGTTCCTCGACCACGGCCCGGACGGCACCGGAGAACCGTTGGCG
ATCCTGCTGCGCCCGGGCAACGCCGGGTCCAACACCGCCACCGACCACATCACCATCGCGCGTGACGCGCAGGCCCAGCTGCCCGGTGTCAACCCGTCCC
GCCCGGGGAAGAAGGTCTTGATCCGTGCCGACGGCGCCGGTGGCACCAAGGACTTCACCACCTGGGCTCACCGTCGCGGCGTGCAGTACTCGGTCGGGTT
CACCCTGCCCGGGCACACCCCCGACTTACTGGCCAAGATTCCCCAGGACGTGTGGGCCCCGGCGTACGACACCGAGGGCAGGGTCCGTCCCGGCGCGGAC
GTGGCCGAGCTCACCGGGCTGCTCACGCTGACCGGGTGGCCACCCGGGATGCGGGTCATCGCCCGCCGCGAACGGCCCCATCCCGGCGCCCAGCTGCGCT
TCGAGGACGTCGACGGGTACCGCATCACCGCGTTCGCGACCAACACCGTCCGTGGCCAGCTGGCCGACCTCGAGCTGCGCCACCGCCGACGTGCCCGGGC
CGAGGACCGGATCCGGATCGCCAAGGACACCGGCCTTGCCAACCTGCCCCTGCACGGCTTCGACCAGAACCGGATCTGGTGCCAGCTCGTGCTGATGGCC
CTGGAGATGACCGCCTGGACCCAGCTGCTCGCCTTCACCGGCCACGCCGCCCGACGGTGGGAACCCAAGCGGCTACGACACCGCGTCTTCACCATCCCCG
CGGCCCTGGCCCGCACCGGCCGCCGGGTCCGCCTGCACCTCAAGGCCGACGCCGCGTACGCCCAGCTCGTCCTGCCCCGACCAGCCCGCACCATCCCTCG
GCACATGGAACCCGACGCCCCCGGGCGCCCTCCGGGCCCCTATCGTACCTGACTGCCAGAATCAGCCCCCGACGGTCACCGTGACACCCGTCTGCACCAG
CTGACGGCCTTCGATGAAACATCGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1500 bp | 499 aa | 53 | 1552 | + | No |
Chemistry : DDE
ORF sequence :
MLLTWDDATCLENTSSPRRSTFQVKHSTRSYPRVHVDTARSGAVAQAGGVLLTRAAEATGLTASLRAELSTWRKPSAVHDPGKITSDLALSLALGGDCLA
DLGLLRAAPGVYGNVASEATVSRTLGALAADADTAVRAINRARASARQRAWAMAGDAAPGHGATAADPLVIDVDATIVIAHSEKEQAAGTHKRTFGFHPL
LAFLDHGPDGTGEPLAILLRPGNAGSNTATDHITIARDAQAQLPGVNPSRPGKKVLIRADGAGGTKDFTTWAHRRGVQYSVGFTLPGHTPDLLAKIPQDV
WAPAYDTEGRVRPGADVAELTGLLTLTGWPPGMRVIARRERPHPGAQLRFEDVDGYRITAFATNTVRGQLADLELRHRRRARAEDRIRIAKDTGLANLPL
HGFDQNRIWCQLVLMALEMTAWTQLLAFTGHAARRWEPKRLRHRVFTIPAALARTGRRVRLHLKADAAYAQLVLPRPARTIPRHMEPDAPGRPPGPYRT
DLGLLRAAPGVYGNVASEATVSRTLGALAADADTAVRAINRARASARQRAWAMAGDAAPGHGATAADPLVIDVDATIVIAHSEKEQAAGTHKRTFGFHPL
LAFLDHGPDGTGEPLAILLRPGNAGSNTATDHITIARDAQAQLPGVNPSRPGKKVLIRADGAGGTKDFTTWAHRRGVQYSVGFTLPGHTPDLLAKIPQDV
WAPAYDTEGRVRPGADVAELTGLLTLTGWPPGMRVIARRERPHPGAQLRFEDVDGYRITAFATNTVRGQLADLELRHRRRARAEDRIRIAKDTGLANLPL
HGFDQNRIWCQLVLMALEMTAWTQLLAFTGHAARRWEPKRLRHRVFTIPAALARTGRRVRLHLKADAAYAQLVLPRPARTIPRHMEPDAPGRPPGPYRT
Blast result :
Comments
ISCur1 is 70% aa similar to IS1676.
References
1] ISfinder annotation (2009)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.