ISCur1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010545 ND Corynebacterium urealyticum
Corynebacterium urealyticum DSM 7109
DNA section
IS Length : 1627 bp

Ends


IR Length : 11/13

IRL : CCTCGAGATTTCACGCGTGGGGGCGGGCGGGCGCGTGCCGTGACGGAGAA
IRR : CCTCGATGTTTCATCGAAGGCCGTCAGCTGGTGCAGACGGGTGTCACGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCCGAGCCCTAGACTCGGCGAC4

DNA sequence

CCTCGAGATTTCACGCGTGGGGGCGGGCGGGCGCGTGCCGTGACGGAGAAAGGTGCTCCTGACCTGGGATGATGCGACTTGTCTAGAGAACACATCGTCA
CCCAGAAGGAGCACCTTTCAGGTGAAGCACTCTACCCGTTCCTACCCGCGAGTCCACGTGGACACAGCACGTTCGGGCGCGGTCGCCCAGGCCGGTGGGG
TGCTGCTGACCCGCGCCGCCGAGGCCACCGGTCTGACCGCCTCGCTCAGGGCCGAGTTGAGCACCTGGCGCAAGCCGTCGGCGGTGCACGACCCGGGCAA
GATCACCAGTGATCTCGCGCTGTCGTTGGCGCTGGGTGGGGACTGCCTGGCCGACCTGGGTCTCCTGCGCGCCGCGCCCGGCGTGTACGGCAACGTCGCC
TCCGAGGCCACGGTCTCCCGGACCCTGGGGGCTCTGGCCGCTGACGCGGACACCGCGGTCCGGGCCATCAACCGGGCCCGCGCATCAGCTCGCCAGCGCG
CCTGGGCGATGGCCGGTGATGCCGCCCCTGGTCACGGTGCCACCGCGGCGGACCCGTTGGTCATCGACGTCGACGCCACCATCGTGATCGCGCACAGCGA
GAAGGAGCAGGCCGCCGGCACCCACAAGCGGACGTTCGGGTTCCACCCGCTGCTGGCGTTCCTCGACCACGGCCCGGACGGCACCGGAGAACCGTTGGCG
ATCCTGCTGCGCCCGGGCAACGCCGGGTCCAACACCGCCACCGACCACATCACCATCGCGCGTGACGCGCAGGCCCAGCTGCCCGGTGTCAACCCGTCCC
GCCCGGGGAAGAAGGTCTTGATCCGTGCCGACGGCGCCGGTGGCACCAAGGACTTCACCACCTGGGCTCACCGTCGCGGCGTGCAGTACTCGGTCGGGTT
CACCCTGCCCGGGCACACCCCCGACTTACTGGCCAAGATTCCCCAGGACGTGTGGGCCCCGGCGTACGACACCGAGGGCAGGGTCCGTCCCGGCGCGGAC
GTGGCCGAGCTCACCGGGCTGCTCACGCTGACCGGGTGGCCACCCGGGATGCGGGTCATCGCCCGCCGCGAACGGCCCCATCCCGGCGCCCAGCTGCGCT
TCGAGGACGTCGACGGGTACCGCATCACCGCGTTCGCGACCAACACCGTCCGTGGCCAGCTGGCCGACCTCGAGCTGCGCCACCGCCGACGTGCCCGGGC
CGAGGACCGGATCCGGATCGCCAAGGACACCGGCCTTGCCAACCTGCCCCTGCACGGCTTCGACCAGAACCGGATCTGGTGCCAGCTCGTGCTGATGGCC
CTGGAGATGACCGCCTGGACCCAGCTGCTCGCCTTCACCGGCCACGCCGCCCGACGGTGGGAACCCAAGCGGCTACGACACCGCGTCTTCACCATCCCCG
CGGCCCTGGCCCGCACCGGCCGCCGGGTCCGCCTGCACCTCAAGGCCGACGCCGCGTACGCCCAGCTCGTCCTGCCCCGACCAGCCCGCACCATCCCTCG
GCACATGGAACCCGACGCCCCCGGGCGCCCTCCGGGCCCCTATCGTACCTGACTGCCAGAATCAGCCCCCGACGGTCACCGTGACACCCGTCTGCACCAG
CTGACGGCCTTCGATGAAACATCGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1500 bp499 aa531552+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLLTWDDATCLENTSSPRRSTFQVKHSTRSYPRVHVDTARSGAVAQAGGVLLTRAAEATGLTASLRAELSTWRKPSAVHDPGKITSDLALSLALGGDCLA
DLGLLRAAPGVYGNVASEATVSRTLGALAADADTAVRAINRARASARQRAWAMAGDAAPGHGATAADPLVIDVDATIVIAHSEKEQAAGTHKRTFGFHPL
LAFLDHGPDGTGEPLAILLRPGNAGSNTATDHITIARDAQAQLPGVNPSRPGKKVLIRADGAGGTKDFTTWAHRRGVQYSVGFTLPGHTPDLLAKIPQDV
WAPAYDTEGRVRPGADVAELTGLLTLTGWPPGMRVIARRERPHPGAQLRFEDVDGYRITAFATNTVRGQLADLELRHRRRARAEDRIRIAKDTGLANLPL
HGFDQNRIWCQLVLMALEMTAWTQLLAFTGHAARRWEPKRLRHRVFTIPAALARTGRRVRLHLKADAAYAQLVLPRPARTIPRHMEPDAPGRPPGPYRT

 

Blast result :
Comments
ISCur1 is 70% aa similar to IS1676.
References
1] ISfinder annotation (2009)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.