ISRer1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005073 ND Rhodococcus erythropolis
Rhodococcus erythropolis BD2 plasmid pBD2
DNA section
IS Length : 1687 bp

Ends


IR Length : 16/21

IRL : CCTCGGGCTTTCGTGCTGATCGAGCGGACACCCGTGTCGAATACGAAGAA
IRR : CCTCAATCTTTCGCGCGGATCACGTGCCGGCCTGAGCGGATTCGGATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAACATTAACTAAGCAGAC0

DNA sequence

CCTCGGGCTTTCGTGCTGATCGAGCGGACACCCGTGTCGAATACGAAGAATGGTGCCCTGAACTGGGATAATTCGACTTGCTGAGGGTCGAGTTTCAACC
AGTTCGAGGAGCACCATTCAGGTGAGCAAGTCTACGTCCCCCTACCCACGCGTGTCCGCATCGGCCACCGGGACCGGCGTCGTGTCGCAGGCCGGAACGG
TCCTGCTGCTGCGCACCGCGGAGAAGACCGGCCTCGCTGCGGCGTTGACGACCGAGCTCGCACCGTATCGAAAACCGCTGGCCCGACACGATCCCGGCAA
GATCGTGCTCGATCTCGCGACAGCATTGGCGATCGGTGGGGACTGCCTCGCCGACATCGCACAACTGCGGGCTCACCCGGAGATCTTCGGCGCAGTGGCC
TCCGACCCGACCGTCTCCCGCCTGATCAGCGTGTTGGCCACCGACGCCGACACCGCGCTCGCCGCGATCGGACGCGCCCGCGCCACCGCCCGCTCCCACG
CCTGGGCCGCCGCCGGCACGTCGGCACCGGACCACGCCATCGACGAAGCGCATCCGCTGGTCCTCGACATCGATGCGACGCTGGTCACCGCGCACTCCGA
GAAGGAACAGGCCGCCCCGACGTTCAAGCGAGGCTTCGGTTTCCACCCGCTGTGCGCGTTCGTCGACCACGGCACAGGCGGCACCGGTGAACCCGTCGCG
ATGCTGCTGCGGCCGGGTAACTCGGGGTCGAATACCGCCGCCGATCACATCACCGTGGTGCAGGACGCCCTCGCACAGTTGCCGGTCGACCCGGCATATC
GGGTCGGGAAGAAGGTGCTGGTGCGTATCGACGGGGCCGGCGGCACCCACGGGTTGATCGAGTATCTGACCAAACGGCGGCTGTCGTATTCGGTGGGGTT
CGGATTGACCGAGACGATGGTCGCCGCACTCGAACTCGTCCCGGACCAGGCATGGACCCCGGCCTACGACTCGGACGGACAGGTCCGCGACGGCGCCTGG
GTGACGGAGTTGACCGGCCTGCTCGATCTGTCGTCGTGGCCGAAAGGCATGCGGGTAATCGTCAGGAAGGAGCGCCCGCATCCGGGTGCGCAGTTACGGT
TCACCGACCGTGACGGCCTACGCCTGACCGCGTTCGTGACCAATACCCGCCGAGGGCAACTCCCGGATCTGGAGCTGCGACATCGGCGTCGGGCTCGGTG
CGAGGACCGGATTCGGACAGCCAAAGTCACCGGGCTGCAGAATCTTCCGCTGCACGGTTTCGATCAGAATCGGATCTGGTTGGCGCTCGTGCAACTCGCA
TGTGAACTGATCGCGTGGATGCAGATGCTCGCGTTGACCGATGTCGCGGCCCGGCGGTGGGAGCCGAAGCGGCTGCGGCTGCGATTGTTGTCGATCGCCG
GTCGCGTCGCCCGGCATGCCCGCCGTGTTCGGCTGCGGCTGGCCGCGACAGCTCCCGATATCGATGTCCTCGTGGCCGGCCTGAACCGGCTGGAGGCACT
TCCTGCGCCTGCGTGACCTGCACGTATCTGTCCGATCAAGACGAAAGGAAACCATTTTCGAGGCCGTGGACCTCGGCGTCACCCGACCGTGTCGGGCAGT
CGACCGTGGATGCACACCGGATCCACGGTCTCCGTATCCAATCCGAATCCGCTCAGGCCGGCACGTGATCCGCGCGAAAGATTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1395 bp464 aa1221516+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKSTSPYPRVSASATGTGVVSQAGTVLLLRTAEKTGLAAALTTELAPYRKPLARHDPGKIVLDLATALAIGGDCLADIAQLRAHPEIFGAVASDPTVSR
LISVLATDADTALAAIGRARATARSHAWAAAGTSAPDHAIDEAHPLVLDIDATLVTAHSEKEQAAPTFKRGFGFHPLCAFVDHGTGGTGEPVAMLLRPGN
SGSNTAADHITVVQDALAQLPVDPAYRVGKKVLVRIDGAGGTHGLIEYLTKRRLSYSVGFGLTETMVAALELVPDQAWTPAYDSDGQVRDGAWVTELTGL
LDLSSWPKGMRVIVRKERPHPGAQLRFTDRDGLRLTAFVTNTRRGQLPDLELRHRRRARCEDRIRTAKVTGLQNLPLHGFDQNRIWLALVQLACELIAWM
QMLALTDVAARRWEPKRLRLRLLSIAGRVARHARRVRLRLAATAPDIDVLVAGLNRLEALPAPA

 

Blast result :
Comments
ISRer1 is 78% aa similar to IS1676.
References
1] Isfinder annotation (2009)
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. J. (2003) Bacteriol. 185 (17), 5269-5274