ISRer1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005073 | ND | Rhodococcus erythropolis | Rhodococcus erythropolis BD2 plasmid pBD2 |
DNA section
IS Length : 1687 bp
Ends
IR Length : 16/21
IRL : CCTCGGGCTTTCGTGCTGATCGAGCGGACACCCGTGTCGAATACGAAGAA
IRR : CCTCAATCTTTCGCGCGGATCACGTGCCGGCCTGAGCGGATTCGGATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAACATTAA | CTAAGCAGAC | 0 |
DNA sequence
CCTCGGGCTTTCGTGCTGATCGAGCGGACACCCGTGTCGAATACGAAGAATGGTGCCCTGAACTGGGATAATTCGACTTGCTGAGGGTCGAGTTTCAACC
AGTTCGAGGAGCACCATTCAGGTGAGCAAGTCTACGTCCCCCTACCCACGCGTGTCCGCATCGGCCACCGGGACCGGCGTCGTGTCGCAGGCCGGAACGG
TCCTGCTGCTGCGCACCGCGGAGAAGACCGGCCTCGCTGCGGCGTTGACGACCGAGCTCGCACCGTATCGAAAACCGCTGGCCCGACACGATCCCGGCAA
GATCGTGCTCGATCTCGCGACAGCATTGGCGATCGGTGGGGACTGCCTCGCCGACATCGCACAACTGCGGGCTCACCCGGAGATCTTCGGCGCAGTGGCC
TCCGACCCGACCGTCTCCCGCCTGATCAGCGTGTTGGCCACCGACGCCGACACCGCGCTCGCCGCGATCGGACGCGCCCGCGCCACCGCCCGCTCCCACG
CCTGGGCCGCCGCCGGCACGTCGGCACCGGACCACGCCATCGACGAAGCGCATCCGCTGGTCCTCGACATCGATGCGACGCTGGTCACCGCGCACTCCGA
GAAGGAACAGGCCGCCCCGACGTTCAAGCGAGGCTTCGGTTTCCACCCGCTGTGCGCGTTCGTCGACCACGGCACAGGCGGCACCGGTGAACCCGTCGCG
ATGCTGCTGCGGCCGGGTAACTCGGGGTCGAATACCGCCGCCGATCACATCACCGTGGTGCAGGACGCCCTCGCACAGTTGCCGGTCGACCCGGCATATC
GGGTCGGGAAGAAGGTGCTGGTGCGTATCGACGGGGCCGGCGGCACCCACGGGTTGATCGAGTATCTGACCAAACGGCGGCTGTCGTATTCGGTGGGGTT
CGGATTGACCGAGACGATGGTCGCCGCACTCGAACTCGTCCCGGACCAGGCATGGACCCCGGCCTACGACTCGGACGGACAGGTCCGCGACGGCGCCTGG
GTGACGGAGTTGACCGGCCTGCTCGATCTGTCGTCGTGGCCGAAAGGCATGCGGGTAATCGTCAGGAAGGAGCGCCCGCATCCGGGTGCGCAGTTACGGT
TCACCGACCGTGACGGCCTACGCCTGACCGCGTTCGTGACCAATACCCGCCGAGGGCAACTCCCGGATCTGGAGCTGCGACATCGGCGTCGGGCTCGGTG
CGAGGACCGGATTCGGACAGCCAAAGTCACCGGGCTGCAGAATCTTCCGCTGCACGGTTTCGATCAGAATCGGATCTGGTTGGCGCTCGTGCAACTCGCA
TGTGAACTGATCGCGTGGATGCAGATGCTCGCGTTGACCGATGTCGCGGCCCGGCGGTGGGAGCCGAAGCGGCTGCGGCTGCGATTGTTGTCGATCGCCG
GTCGCGTCGCCCGGCATGCCCGCCGTGTTCGGCTGCGGCTGGCCGCGACAGCTCCCGATATCGATGTCCTCGTGGCCGGCCTGAACCGGCTGGAGGCACT
TCCTGCGCCTGCGTGACCTGCACGTATCTGTCCGATCAAGACGAAAGGAAACCATTTTCGAGGCCGTGGACCTCGGCGTCACCCGACCGTGTCGGGCAGT
CGACCGTGGATGCACACCGGATCCACGGTCTCCGTATCCAATCCGAATCCGCTCAGGCCGGCACGTGATCCGCGCGAAAGATTGAGG
AGTTCGAGGAGCACCATTCAGGTGAGCAAGTCTACGTCCCCCTACCCACGCGTGTCCGCATCGGCCACCGGGACCGGCGTCGTGTCGCAGGCCGGAACGG
TCCTGCTGCTGCGCACCGCGGAGAAGACCGGCCTCGCTGCGGCGTTGACGACCGAGCTCGCACCGTATCGAAAACCGCTGGCCCGACACGATCCCGGCAA
GATCGTGCTCGATCTCGCGACAGCATTGGCGATCGGTGGGGACTGCCTCGCCGACATCGCACAACTGCGGGCTCACCCGGAGATCTTCGGCGCAGTGGCC
TCCGACCCGACCGTCTCCCGCCTGATCAGCGTGTTGGCCACCGACGCCGACACCGCGCTCGCCGCGATCGGACGCGCCCGCGCCACCGCCCGCTCCCACG
CCTGGGCCGCCGCCGGCACGTCGGCACCGGACCACGCCATCGACGAAGCGCATCCGCTGGTCCTCGACATCGATGCGACGCTGGTCACCGCGCACTCCGA
GAAGGAACAGGCCGCCCCGACGTTCAAGCGAGGCTTCGGTTTCCACCCGCTGTGCGCGTTCGTCGACCACGGCACAGGCGGCACCGGTGAACCCGTCGCG
ATGCTGCTGCGGCCGGGTAACTCGGGGTCGAATACCGCCGCCGATCACATCACCGTGGTGCAGGACGCCCTCGCACAGTTGCCGGTCGACCCGGCATATC
GGGTCGGGAAGAAGGTGCTGGTGCGTATCGACGGGGCCGGCGGCACCCACGGGTTGATCGAGTATCTGACCAAACGGCGGCTGTCGTATTCGGTGGGGTT
CGGATTGACCGAGACGATGGTCGCCGCACTCGAACTCGTCCCGGACCAGGCATGGACCCCGGCCTACGACTCGGACGGACAGGTCCGCGACGGCGCCTGG
GTGACGGAGTTGACCGGCCTGCTCGATCTGTCGTCGTGGCCGAAAGGCATGCGGGTAATCGTCAGGAAGGAGCGCCCGCATCCGGGTGCGCAGTTACGGT
TCACCGACCGTGACGGCCTACGCCTGACCGCGTTCGTGACCAATACCCGCCGAGGGCAACTCCCGGATCTGGAGCTGCGACATCGGCGTCGGGCTCGGTG
CGAGGACCGGATTCGGACAGCCAAAGTCACCGGGCTGCAGAATCTTCCGCTGCACGGTTTCGATCAGAATCGGATCTGGTTGGCGCTCGTGCAACTCGCA
TGTGAACTGATCGCGTGGATGCAGATGCTCGCGTTGACCGATGTCGCGGCCCGGCGGTGGGAGCCGAAGCGGCTGCGGCTGCGATTGTTGTCGATCGCCG
GTCGCGTCGCCCGGCATGCCCGCCGTGTTCGGCTGCGGCTGGCCGCGACAGCTCCCGATATCGATGTCCTCGTGGCCGGCCTGAACCGGCTGGAGGCACT
TCCTGCGCCTGCGTGACCTGCACGTATCTGTCCGATCAAGACGAAAGGAAACCATTTTCGAGGCCGTGGACCTCGGCGTCACCCGACCGTGTCGGGCAGT
CGACCGTGGATGCACACCGGATCCACGGTCTCCGTATCCAATCCGAATCCGCTCAGGCCGGCACGTGATCCGCGCGAAAGATTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1395 bp | 464 aa | 122 | 1516 | + | No |
Chemistry : DDE
ORF sequence :
MSKSTSPYPRVSASATGTGVVSQAGTVLLLRTAEKTGLAAALTTELAPYRKPLARHDPGKIVLDLATALAIGGDCLADIAQLRAHPEIFGAVASDPTVSR
LISVLATDADTALAAIGRARATARSHAWAAAGTSAPDHAIDEAHPLVLDIDATLVTAHSEKEQAAPTFKRGFGFHPLCAFVDHGTGGTGEPVAMLLRPGN
SGSNTAADHITVVQDALAQLPVDPAYRVGKKVLVRIDGAGGTHGLIEYLTKRRLSYSVGFGLTETMVAALELVPDQAWTPAYDSDGQVRDGAWVTELTGL
LDLSSWPKGMRVIVRKERPHPGAQLRFTDRDGLRLTAFVTNTRRGQLPDLELRHRRRARCEDRIRTAKVTGLQNLPLHGFDQNRIWLALVQLACELIAWM
QMLALTDVAARRWEPKRLRLRLLSIAGRVARHARRVRLRLAATAPDIDVLVAGLNRLEALPAPA
LISVLATDADTALAAIGRARATARSHAWAAAGTSAPDHAIDEAHPLVLDIDATLVTAHSEKEQAAPTFKRGFGFHPLCAFVDHGTGGTGEPVAMLLRPGN
SGSNTAADHITVVQDALAQLPVDPAYRVGKKVLVRIDGAGGTHGLIEYLTKRRLSYSVGFGLTETMVAALELVPDQAWTPAYDSDGQVRDGAWVTELTGL
LDLSSWPKGMRVIVRKERPHPGAQLRFTDRDGLRLTAFVTNTRRGQLPDLELRHRRRARCEDRIRTAKVTGLQNLPLHGFDQNRIWLALVQLACELIAWM
QMLALTDVAARRWEPKRLRLRLLSIAGRVARHARRVRLRLAATAPDIDVLVAGLNRLEALPAPA
Blast result :
Comments
ISRer1 is 78% aa similar to IS1676.
References
1] Isfinder annotation (2009)
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. J. (2003) Bacteriol. 185 (17), 5269-5274
2] Stecker,C., Johann,A., Herzberg,C., Averhoff,B. and Gottschalk,G. J. (2003) Bacteriol. 185 (17), 5269-5274