ISBli5

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAGP01000028 ND Brevibacterium linens
Brevibacterium linens BL2
Brevibacterium aurantiacum
DNA section
IS Length : 1687 bp

Ends


IR Length : 12/15

IRL : CCTCGGGGTTTCATGATTAGGCGCGGCCAGATGCTGGACTGACAAGAAGA
IRR : CCTCGATTTTTCATGGGTAGCTGGTTGCCTATGATTCCGGCTCCGTTGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGGCACTACTTAGCACCGATCCT4

DNA sequence

CCTCGGGGTTTCATGATTAGGCGCGGCCAGATGCTGGACTGACAAGAAGAAAGTGCTCCTGACCAGGGATAATGATGTTTGCGACGACATCAATATTCTC
TGGAAAAGGAGCACTCTCAGAGTGAAGCCTACCCGCACCTATCCCCGCCTGCACATCGATACCGCACCCAGCAACGCCCTCGGCCACGCCGGCGGGCTCC
TGCTCACCGAAACCGTGCACACCAGCGGACTCGACCACCATCTGAAAACGGCGCTGGCACCGTGGAAGAAGCCCTTCGCCGTTCATGATCCAGCCAAGGT
CCTTCTCGATCTCGCGATCACTCTCGCTCTTGGTGGTGACGCCCTGTCGGACTCCACAGCACTCCGCGACGAACCCGACCTTTACGGGCCGGTGGCATCG
AATCCGACGATCACCAGGATCATCCAAACCCTTGCCAGCGACGTCGACCGGTCCCTGGCAGCGATCAACCAAGCCCGGGCAGCAGCCCGGACCCGGGTGT
GGGAACTGGCTGGCAAACACGCCCCGAACCACGACGCCGATGCTCAGGATCCGTTGATCATCGACATCGATGCTTCTTTGATCACTGCCCACAGTGAGAA
GGAGAACGCGAAACCCACCTATAAGAAAGGGTTTGGATTTCATCCCCTGCTCGCCTTCATCGACCACGGGGACTGTGGCACTGGTGAACCTGTGGCCCAG
TTGCTGCGTCCTGGAAACGCGGGATCGAACACGGCTGCCGATCACATCAGCCTGGTCAAACTCGTCCTCGATCAGTTGCCCGATCGCAACCCTCGTCCGG
GCAAGAGTGTCCTCATTCGCACCGACACTGCCGGTGGCACCCATGACTTCCTCGAGTTCCTCACGAGACGGCGTCTGTCGTACTCGGTGGGCTGGATGCT
TCCAGGCAACACTCCCGAGCTGTATCGCCAACTCACGCAACTCAGTGCCTGGGAGTCAGCCTATGACACCAACGGTGAACCCCGCGACGGTGCTGATGTG
GCCGAACTGACCGGGGTCCTCGACCTGGCCGGCTGGCCGGAAGGGATGCGGATCATTGTCCGCCGGGAGCGTCCTCATCCGGGTGCCCAGTTGCGCTTTG
ATGATGTCGACGGATACCGGGTCACCGCGTTCGCGACGAACACGAAGGGCGCTCAGTTAGCGGATCTGGAAGTCCGTCACCGGTCAAGAGCCAGGTGTGA
GGATCGGATTCGCATCGCCAAGGACTCCGGGTTACGCAACTTCCCGCTGAAGGGATTCGATCAGAACCAGATCTGGTTAGCTGTCATCGCTTTGGCGGGA
GAGATCGAGGCATGGAAGTCGTTGTTGGCGTTCCCGGACCATGAGATCCGCCGGTGGGAACCGAAGAAGCTGCGCATGCACGTCTACGCAGTCCCGGCGA
CAATCGCGAGAACAGCACGCCGGGCCGTGGTTCATATGAAAGAAACTGCCCGCTGGGCTGGAACCATCGTTGCTGGTCTCGACCGGTTGCGGAGTCTGCC
GGGGCCAGCCCCAGGATAGAGCTTGGGTGTCCGTGTTCGTTCGAGTTGGGGAAAGGGCTGGGGTTGGATCCCCGCAGGGCCGTGGCGAAACACGGTGGTC
GTGTCATGCCCGAATGGCAGAATCAGTGTCAGTACGCGGCAACGGAGCCGGAATCATAGGCAACCAGCTACCCATGAAAAATCGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp465 aa1221519+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPTRTYPRLHIDTAPSNALGHAGGLLLTETVHTSGLDHHLKTALAPWKKPFAVHDPAKVLLDLAITLALGGDALSDSTALRDEPDLYGPVASNPTITRI
IQTLASDVDRSLAAINQARAAARTRVWELAGKHAPNHDADAQDPLIIDIDASLITAHSEKENAKPTYKKGFGFHPLLAFIDHGDCGTGEPVAQLLRPGNA
GSNTAADHISLVKLVLDQLPDRNPRPGKSVLIRTDTAGGTHDFLEFLTRRRLSYSVGWMLPGNTPELYRQLTQLSAWESAYDTNGEPRDGADVAELTGVL
DLAGWPEGMRIIVRRERPHPGAQLRFDDVDGYRVTAFATNTKGAQLADLEVRHRSRARCEDRIRIAKDSGLRNFPLKGFDQNQIWLAVIALAGEIEAWKS
LLAFPDHEIRRWEPKKLRMHVYAVPATIARTARRAVVHMKETARWAGTIVAGLDRLRSLPGPAPG

 

Blast result :
Comments
ISBli5 is 71% aa similar to IS1676.
References
1] ISfinder annotation (2009)
2] NCBI Microbial Genomes Annotation Project. (2005)