ISBli5
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAGP01000028 | ND | Brevibacterium linens | Brevibacterium linens BL2 Brevibacterium aurantiacum |
DNA section
IS Length : 1687 bp
Ends
IR Length : 12/15
IRL : CCTCGGGGTTTCATGATTAGGCGCGGCCAGATGCTGGACTGACAAGAAGA
IRR : CCTCGATTTTTCATGGGTAGCTGGTTGCCTATGATTCCGGCTCCGTTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGCACTAC | TTAG | CACCGATCCT | 4 |
DNA sequence
CCTCGGGGTTTCATGATTAGGCGCGGCCAGATGCTGGACTGACAAGAAGAAAGTGCTCCTGACCAGGGATAATGATGTTTGCGACGACATCAATATTCTC
TGGAAAAGGAGCACTCTCAGAGTGAAGCCTACCCGCACCTATCCCCGCCTGCACATCGATACCGCACCCAGCAACGCCCTCGGCCACGCCGGCGGGCTCC
TGCTCACCGAAACCGTGCACACCAGCGGACTCGACCACCATCTGAAAACGGCGCTGGCACCGTGGAAGAAGCCCTTCGCCGTTCATGATCCAGCCAAGGT
CCTTCTCGATCTCGCGATCACTCTCGCTCTTGGTGGTGACGCCCTGTCGGACTCCACAGCACTCCGCGACGAACCCGACCTTTACGGGCCGGTGGCATCG
AATCCGACGATCACCAGGATCATCCAAACCCTTGCCAGCGACGTCGACCGGTCCCTGGCAGCGATCAACCAAGCCCGGGCAGCAGCCCGGACCCGGGTGT
GGGAACTGGCTGGCAAACACGCCCCGAACCACGACGCCGATGCTCAGGATCCGTTGATCATCGACATCGATGCTTCTTTGATCACTGCCCACAGTGAGAA
GGAGAACGCGAAACCCACCTATAAGAAAGGGTTTGGATTTCATCCCCTGCTCGCCTTCATCGACCACGGGGACTGTGGCACTGGTGAACCTGTGGCCCAG
TTGCTGCGTCCTGGAAACGCGGGATCGAACACGGCTGCCGATCACATCAGCCTGGTCAAACTCGTCCTCGATCAGTTGCCCGATCGCAACCCTCGTCCGG
GCAAGAGTGTCCTCATTCGCACCGACACTGCCGGTGGCACCCATGACTTCCTCGAGTTCCTCACGAGACGGCGTCTGTCGTACTCGGTGGGCTGGATGCT
TCCAGGCAACACTCCCGAGCTGTATCGCCAACTCACGCAACTCAGTGCCTGGGAGTCAGCCTATGACACCAACGGTGAACCCCGCGACGGTGCTGATGTG
GCCGAACTGACCGGGGTCCTCGACCTGGCCGGCTGGCCGGAAGGGATGCGGATCATTGTCCGCCGGGAGCGTCCTCATCCGGGTGCCCAGTTGCGCTTTG
ATGATGTCGACGGATACCGGGTCACCGCGTTCGCGACGAACACGAAGGGCGCTCAGTTAGCGGATCTGGAAGTCCGTCACCGGTCAAGAGCCAGGTGTGA
GGATCGGATTCGCATCGCCAAGGACTCCGGGTTACGCAACTTCCCGCTGAAGGGATTCGATCAGAACCAGATCTGGTTAGCTGTCATCGCTTTGGCGGGA
GAGATCGAGGCATGGAAGTCGTTGTTGGCGTTCCCGGACCATGAGATCCGCCGGTGGGAACCGAAGAAGCTGCGCATGCACGTCTACGCAGTCCCGGCGA
CAATCGCGAGAACAGCACGCCGGGCCGTGGTTCATATGAAAGAAACTGCCCGCTGGGCTGGAACCATCGTTGCTGGTCTCGACCGGTTGCGGAGTCTGCC
GGGGCCAGCCCCAGGATAGAGCTTGGGTGTCCGTGTTCGTTCGAGTTGGGGAAAGGGCTGGGGTTGGATCCCCGCAGGGCCGTGGCGAAACACGGTGGTC
GTGTCATGCCCGAATGGCAGAATCAGTGTCAGTACGCGGCAACGGAGCCGGAATCATAGGCAACCAGCTACCCATGAAAAATCGAGG
TGGAAAAGGAGCACTCTCAGAGTGAAGCCTACCCGCACCTATCCCCGCCTGCACATCGATACCGCACCCAGCAACGCCCTCGGCCACGCCGGCGGGCTCC
TGCTCACCGAAACCGTGCACACCAGCGGACTCGACCACCATCTGAAAACGGCGCTGGCACCGTGGAAGAAGCCCTTCGCCGTTCATGATCCAGCCAAGGT
CCTTCTCGATCTCGCGATCACTCTCGCTCTTGGTGGTGACGCCCTGTCGGACTCCACAGCACTCCGCGACGAACCCGACCTTTACGGGCCGGTGGCATCG
AATCCGACGATCACCAGGATCATCCAAACCCTTGCCAGCGACGTCGACCGGTCCCTGGCAGCGATCAACCAAGCCCGGGCAGCAGCCCGGACCCGGGTGT
GGGAACTGGCTGGCAAACACGCCCCGAACCACGACGCCGATGCTCAGGATCCGTTGATCATCGACATCGATGCTTCTTTGATCACTGCCCACAGTGAGAA
GGAGAACGCGAAACCCACCTATAAGAAAGGGTTTGGATTTCATCCCCTGCTCGCCTTCATCGACCACGGGGACTGTGGCACTGGTGAACCTGTGGCCCAG
TTGCTGCGTCCTGGAAACGCGGGATCGAACACGGCTGCCGATCACATCAGCCTGGTCAAACTCGTCCTCGATCAGTTGCCCGATCGCAACCCTCGTCCGG
GCAAGAGTGTCCTCATTCGCACCGACACTGCCGGTGGCACCCATGACTTCCTCGAGTTCCTCACGAGACGGCGTCTGTCGTACTCGGTGGGCTGGATGCT
TCCAGGCAACACTCCCGAGCTGTATCGCCAACTCACGCAACTCAGTGCCTGGGAGTCAGCCTATGACACCAACGGTGAACCCCGCGACGGTGCTGATGTG
GCCGAACTGACCGGGGTCCTCGACCTGGCCGGCTGGCCGGAAGGGATGCGGATCATTGTCCGCCGGGAGCGTCCTCATCCGGGTGCCCAGTTGCGCTTTG
ATGATGTCGACGGATACCGGGTCACCGCGTTCGCGACGAACACGAAGGGCGCTCAGTTAGCGGATCTGGAAGTCCGTCACCGGTCAAGAGCCAGGTGTGA
GGATCGGATTCGCATCGCCAAGGACTCCGGGTTACGCAACTTCCCGCTGAAGGGATTCGATCAGAACCAGATCTGGTTAGCTGTCATCGCTTTGGCGGGA
GAGATCGAGGCATGGAAGTCGTTGTTGGCGTTCCCGGACCATGAGATCCGCCGGTGGGAACCGAAGAAGCTGCGCATGCACGTCTACGCAGTCCCGGCGA
CAATCGCGAGAACAGCACGCCGGGCCGTGGTTCATATGAAAGAAACTGCCCGCTGGGCTGGAACCATCGTTGCTGGTCTCGACCGGTTGCGGAGTCTGCC
GGGGCCAGCCCCAGGATAGAGCTTGGGTGTCCGTGTTCGTTCGAGTTGGGGAAAGGGCTGGGGTTGGATCCCCGCAGGGCCGTGGCGAAACACGGTGGTC
GTGTCATGCCCGAATGGCAGAATCAGTGTCAGTACGCGGCAACGGAGCCGGAATCATAGGCAACCAGCTACCCATGAAAAATCGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1398 bp | 465 aa | 122 | 1519 | + | No |
Chemistry : DDE
ORF sequence :
MKPTRTYPRLHIDTAPSNALGHAGGLLLTETVHTSGLDHHLKTALAPWKKPFAVHDPAKVLLDLAITLALGGDALSDSTALRDEPDLYGPVASNPTITRI
IQTLASDVDRSLAAINQARAAARTRVWELAGKHAPNHDADAQDPLIIDIDASLITAHSEKENAKPTYKKGFGFHPLLAFIDHGDCGTGEPVAQLLRPGNA
GSNTAADHISLVKLVLDQLPDRNPRPGKSVLIRTDTAGGTHDFLEFLTRRRLSYSVGWMLPGNTPELYRQLTQLSAWESAYDTNGEPRDGADVAELTGVL
DLAGWPEGMRIIVRRERPHPGAQLRFDDVDGYRVTAFATNTKGAQLADLEVRHRSRARCEDRIRIAKDSGLRNFPLKGFDQNQIWLAVIALAGEIEAWKS
LLAFPDHEIRRWEPKKLRMHVYAVPATIARTARRAVVHMKETARWAGTIVAGLDRLRSLPGPAPG
IQTLASDVDRSLAAINQARAAARTRVWELAGKHAPNHDADAQDPLIIDIDASLITAHSEKENAKPTYKKGFGFHPLLAFIDHGDCGTGEPVAQLLRPGNA
GSNTAADHISLVKLVLDQLPDRNPRPGKSVLIRTDTAGGTHDFLEFLTRRRLSYSVGWMLPGNTPELYRQLTQLSAWESAYDTNGEPRDGADVAELTGVL
DLAGWPEGMRIIVRRERPHPGAQLRFDDVDGYRVTAFATNTKGAQLADLEVRHRSRARCEDRIRIAKDSGLRNFPLKGFDQNQIWLAVIALAGEIEAWKS
LLAFPDHEIRRWEPKKLRMHVYAVPATIARTARRAVVHMKETARWAGTIVAGLDRLRSLPGPAPG
Blast result :
Comments
ISBli5 is 71% aa similar to IS1676.
References
1] ISfinder annotation (2009)
2] NCBI Microbial Genomes Annotation Project. (2005)
2] NCBI Microbial Genomes Annotation Project. (2005)