ISClba1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABQR01000077 | ND | Clostridiales bacterium | Clostridiales bacterium 1_7_47_FAA |
DNA section
IS Length : 1698 bp
Ends
IR Length : 12
IRL : CCGTGAAACTCATATAAAAAATATGTATTGGAAACCACATATTTTAACGG
IRR : CCGTGAAACTCACGGATTAATCATAGCAAGTCGCACAAAGTGTATTGTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TACCATAAT | ATTCA | 0 |
DNA sequence
CCGTGAAACTCATATAAAAAATATGTATTGGAAACCACATATTTTAACGGGTTGATTAGTTTTTTGTTCTATGTTTCAAAATCACCCAATGGGTGAAAAA
ATTATTGATTTTTCTAAGCAATCCATGCCGATACTTGGTAAAATAAAAGCATCAAATATAGAGGTGATTGTTATGAAAAAATTAGTTGTAGAATTCTCCG
AAGAACGCCTAATTACACCAAGTGGTCTTTCTCTTGTTGGTTCTATGTTAGGCAAACGTGACTTTGCAAAGAAATGTAACCGTATGTCTGTTTCAGCAAA
ACGTTCTCAGCCACAAATCAAAAATGGAGATATTCTATTGACATATATTGGTCTTCTCTGTCAGGGTAAAACAGAATATGAAGCTGTCCATGAAATGATG
GATGACCCTGAATATTACAAAATGGCACTTGGAATCGCTTATGCAATTCCATCGGCTGAAACACTTCGCCAACGAATGGATGATATTGGTTCTTCGTTGC
GAGATACCATTCTGCAAGCCAATGTTGACATGTTCAAAACGTATAACATCCGACCAACGGCACTTGAAAATGGCTATGTTCCAGTTGATATAGACGTAAC
TCCTTTTGATAATTCCAAGACTTCAAAAGAAGGTGTTTCCAGAACCTATAAAGGTTATGATGGCTATGCACCAATGATGGCATATATTGGAACAGAAGGT
TTTCTTGTTAACTGTGAGCTGCGTGAAGGAAAACAGCACTGTCAGAAACATACACCAGAATTTCTGAAAGAAACTCTGCAATTATGTCATCAGTTGACAG
ATGCACCACTGCTGATCCGTCTCGATTCTGGGAATGATGCAGCGAAAAACCTGGGTATCTTAATTGAAGATGGCTCCTGGTTTATTGTGAAACGAAATCT
TCGCAGAGGTGAAAGCAAAGATGACTGGATTTCGCTTGCAAAAGAATGCTGTAAAGATATTCGCAATCCTCGTGACGGAAAAGAAGTCTATGTTGGTTCC
TCTTGGAAGGATGTTACCTACACAGATGATGAAAACAACGATAAAACAATGTGTATGCGTATCGGCTATGAAATCATAGAACGAAGTATTGATAAACATG
GGCAGTTTCTTTTGCCAGCCGACATAGAAGCAAACACATGGTGGACAAATTTAGGTGCCACAGATGATGAAGTAATTGCCTTATATCATGCACATGGTGA
ATGCGAACAGTATCACAGTGAAATCAAAACTGATATGGATGTAGAACGTCTTCCATCTGGTAAATTTGAAACAAATGAGCTTGTTTTGGAGTTAACCATC
ATTGCATACAACATTTTAAGAATGATAGGGCAGGAATCATTAAAGAGCAAGAAAGCACCAAAGACAAAACATGTTGTAAAACGCCGCCGTCTGAGAACAG
TAATAAGCAATCTGATTTTGATTGCAGGACATATAACATCGCATGCCCGAAAAGTAGTCCTTGCGCTCGGATGTAGTAACACATGGCGGTATGTATTTAT
GGATCTGTTTCAAAAATTTGCATTGGCATAACGGATAAATAACAGAAGCCACTATGTGGCTTATTAAGAGACGGATAATTTATGAACGTCTGCTTAATAA
ACGATATTTGAAAGCAGGCAAGCGCACAATATACACTTCTTTCGAAGAGAACAATACACTTTGTGCGACTTGCTATGATTAATCCGTGAGTTTCACGG
ATTATTGATTTTTCTAAGCAATCCATGCCGATACTTGGTAAAATAAAAGCATCAAATATAGAGGTGATTGTTATGAAAAAATTAGTTGTAGAATTCTCCG
AAGAACGCCTAATTACACCAAGTGGTCTTTCTCTTGTTGGTTCTATGTTAGGCAAACGTGACTTTGCAAAGAAATGTAACCGTATGTCTGTTTCAGCAAA
ACGTTCTCAGCCACAAATCAAAAATGGAGATATTCTATTGACATATATTGGTCTTCTCTGTCAGGGTAAAACAGAATATGAAGCTGTCCATGAAATGATG
GATGACCCTGAATATTACAAAATGGCACTTGGAATCGCTTATGCAATTCCATCGGCTGAAACACTTCGCCAACGAATGGATGATATTGGTTCTTCGTTGC
GAGATACCATTCTGCAAGCCAATGTTGACATGTTCAAAACGTATAACATCCGACCAACGGCACTTGAAAATGGCTATGTTCCAGTTGATATAGACGTAAC
TCCTTTTGATAATTCCAAGACTTCAAAAGAAGGTGTTTCCAGAACCTATAAAGGTTATGATGGCTATGCACCAATGATGGCATATATTGGAACAGAAGGT
TTTCTTGTTAACTGTGAGCTGCGTGAAGGAAAACAGCACTGTCAGAAACATACACCAGAATTTCTGAAAGAAACTCTGCAATTATGTCATCAGTTGACAG
ATGCACCACTGCTGATCCGTCTCGATTCTGGGAATGATGCAGCGAAAAACCTGGGTATCTTAATTGAAGATGGCTCCTGGTTTATTGTGAAACGAAATCT
TCGCAGAGGTGAAAGCAAAGATGACTGGATTTCGCTTGCAAAAGAATGCTGTAAAGATATTCGCAATCCTCGTGACGGAAAAGAAGTCTATGTTGGTTCC
TCTTGGAAGGATGTTACCTACACAGATGATGAAAACAACGATAAAACAATGTGTATGCGTATCGGCTATGAAATCATAGAACGAAGTATTGATAAACATG
GGCAGTTTCTTTTGCCAGCCGACATAGAAGCAAACACATGGTGGACAAATTTAGGTGCCACAGATGATGAAGTAATTGCCTTATATCATGCACATGGTGA
ATGCGAACAGTATCACAGTGAAATCAAAACTGATATGGATGTAGAACGTCTTCCATCTGGTAAATTTGAAACAAATGAGCTTGTTTTGGAGTTAACCATC
ATTGCATACAACATTTTAAGAATGATAGGGCAGGAATCATTAAAGAGCAAGAAAGCACCAAAGACAAAACATGTTGTAAAACGCCGCCGTCTGAGAACAG
TAATAAGCAATCTGATTTTGATTGCAGGACATATAACATCGCATGCCCGAAAAGTAGTCCTTGCGCTCGGATGTAGTAACACATGGCGGTATGTATTTAT
GGATCTGTTTCAAAAATTTGCATTGGCATAACGGATAAATAACAGAAGCCACTATGTGGCTTATTAAGAGACGGATAATTTATGAACGTCTGCTTAATAA
ACGATATTTGAAAGCAGGCAAGCGCACAATATACACTTCTTTCGAAGAGAACAATACACTTTGTGCGACTTGCTATGATTAATCCGTGAGTTTCACGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1461 bp | 486 aa | 71 | 1531 | + | No |
Chemistry : DDE
ORF sequence :
MFQNHPMGEKIIDFSKQSMPILGKIKASNIEVIVMKKLVVEFSEERLITPSGLSLVGSMLGKRDFAKKCNRMSVSAKRSQPQIKNGDILLTYIGLLCQGK
TEYEAVHEMMDDPEYYKMALGIAYAIPSAETLRQRMDDIGSSLRDTILQANVDMFKTYNIRPTALENGYVPVDIDVTPFDNSKTSKEGVSRTYKGYDGYA
PMMAYIGTEGFLVNCELREGKQHCQKHTPEFLKETLQLCHQLTDAPLLIRLDSGNDAAKNLGILIEDGSWFIVKRNLRRGESKDDWISLAKECCKDIRNP
RDGKEVYVGSSWKDVTYTDDENNDKTMCMRIGYEIIERSIDKHGQFLLPADIEANTWWTNLGATDDEVIALYHAHGECEQYHSEIKTDMDVERLPSGKFE
TNELVLELTIIAYNILRMIGQESLKSKKAPKTKHVVKRRRLRTVISNLILIAGHITSHARKVVLALGCSNTWRYVFMDLFQKFALA
TEYEAVHEMMDDPEYYKMALGIAYAIPSAETLRQRMDDIGSSLRDTILQANVDMFKTYNIRPTALENGYVPVDIDVTPFDNSKTSKEGVSRTYKGYDGYA
PMMAYIGTEGFLVNCELREGKQHCQKHTPEFLKETLQLCHQLTDAPLLIRLDSGNDAAKNLGILIEDGSWFIVKRNLRRGESKDDWISLAKECCKDIRNP
RDGKEVYVGSSWKDVTYTDDENNDKTMCMRIGYEIIERSIDKHGQFLLPADIEANTWWTNLGATDDEVIALYHAHGECEQYHSEIKTDMDVERLPSGKFE
TNELVLELTIIAYNILRMIGQESLKSKKAPKTKHVVKRRRLRTVISNLILIAGHITSHARKVVLALGCSNTWRYVFMDLFQKFALA
Blast result :
Comments
ISClba1 is 62% aa similar to ISDre4.
References
1] ISfinder annotation (2009)
2] Allen-Vercoe,E., Strauss,J., Ambrose,C., Ward,D., Gujja,S., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Shea,T., Sykes,S., Alvarado,L., Kodira,C., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.
2] Allen-Vercoe,E., Strauss,J., Ambrose,C., Ward,D., Gujja,S., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Shea,T., Sykes,S., Alvarado,L., Kodira,C., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.