ISBli4
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAGP01000015 | ND | Brevibacterium linens | Brevibacterium linens BL2 Brevibacterium aurantiacum |
DNA section
IS Length : 1713 bp
Ends
IR Length : 17/18
IRL : CCTTGATCCACCGATGCGAGTAGCCGGATCAAGCCGCGCGTGAAATGGAA
IRR : CCTTGATCCACCGATTCGCTTGATGGCAAGGGGCTCACTCGGATTCGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGCCTTCG | GTAAG | GGCCGGGCGA | 5 |
DNA sequence
CCTTGATCCACCGATGCGAGTAGCCGGATCAAGCCGCGCGTGAAATGGAAATGCCCCTTCTGAACTGGGAAAATGATGATGTTCGAAGTCAACATTCCCG
TTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCGCGTCTGTGTCTCACTCCTTCGACGATGCGAACCTGACGGCCACTACCGGGCTCGT
CCCGATCATGAGCCTCGCCCAGATGGCGGGCCTGCCAGACCTCGCCGAAGACCGTCTGACCGTGACCACCACCGGAGCCGACAAGGGCGCGAACCCGGCA
CCGAAACTGGCTACCCTGGTCGCGGGAATGGCTGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGCAACACCTCTTCGATC
GTGTCTACGCGCCCTCGACCCTGGGGTCGTTCCTGCGCTCGTTCGCCTTCGGCCACGTCCGGCAACTCGACGCGATCTCTTCCCGTTTCCTGACCAACCT
CAACGAGCACACACCGCTGCTACCAGCCAGCGAAGACACTGGACAAGCGATGGTGTTCGTCGATGTCGACGACACCGTCATCGATGTTCACTCCGCGTCG
AAGCAGGGAGCCGGGTTCGGCTACCAAGGCAGTCGTGGCCTCAACACGCTGTTGGCCACAGCCTCGACCCGCGACTCCAGCCAGATCATCGTCGGCCAGC
GCCTGCGCAAGGGCTCAACCTCGTCAGCCCGGGGTGCTGACAAGTTCGTCGCCGACGCTCTGGCCACCACGACCCGAATCAACTCCGGCCTCCCAGCCCT
GGTCAGGGCTGATTCGGCGTACTACTCCTCGACTGTGACCAAAGCCGCCCGGGATGCCGGGGCTGAAGTATCGATCACGGTCCGCATGGACAAGAAGGTC
AAAGCAGCGATCGGAACAATCAGCGACGGCGCATGGACTGGCATCGAATACCCCGAAGCGATCTACGACGAAGAGACCAGGGCCTGGATTTCGAAGGCCG
AAGTCGCCGAGGTCCCGTTCACCGCATTCACCTCGAAGAAGAAGTCCCTGCACACCCCCGGCCGCTTGGTCGTCCGCCGCATCCCTGAACTCAACGAGAC
CAAACGCACTGCCGGGCAGGACCCATTGTTCGACTTGTACCGGTACCACGCGTTCTTCACCACCGTGGACAAAGACCGTTTCGACACCGTCGCTGCTGAT
CACATCCACCGCAAGCACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAACGGTGCCCTGGCACATATGCCCTCTGGGGTGTTCAACGCCAACGCCG
CCTGGGTCGCGATCGCAGCGATCACACACAACCTGCTGCGGGCTGCTGCCGGACTCATCGGTGGACGGATGAGCAAAGTGCGCGCTCAGACGCTGCGGAC
ACGGATCATCGGCATCCCGGCCCGGATCGCTCACCGGGCCAGGAAGCTGATTGTGCACCTGCCGAGACGGTGGCCGTGGGCGACGGAATTCGCACGACTC
TGGCACGCGGCTCTGAGCCCACCTACACGATCATTGTCCTGACCGATTCGCTCCTGCTCGAGCACGACGCCGCAGGGTCTGGAGGAGACCCCGGGGAATC
ATCTATGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCTCGCGCCGCGTTCGCACTCGAATCCGAGTGAGCCCCTTGCCATCAAGCGAAT
CGGTGGATCAAGG
TTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCGCGTCTGTGTCTCACTCCTTCGACGATGCGAACCTGACGGCCACTACCGGGCTCGT
CCCGATCATGAGCCTCGCCCAGATGGCGGGCCTGCCAGACCTCGCCGAAGACCGTCTGACCGTGACCACCACCGGAGCCGACAAGGGCGCGAACCCGGCA
CCGAAACTGGCTACCCTGGTCGCGGGAATGGCTGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGCAACACCTCTTCGATC
GTGTCTACGCGCCCTCGACCCTGGGGTCGTTCCTGCGCTCGTTCGCCTTCGGCCACGTCCGGCAACTCGACGCGATCTCTTCCCGTTTCCTGACCAACCT
CAACGAGCACACACCGCTGCTACCAGCCAGCGAAGACACTGGACAAGCGATGGTGTTCGTCGATGTCGACGACACCGTCATCGATGTTCACTCCGCGTCG
AAGCAGGGAGCCGGGTTCGGCTACCAAGGCAGTCGTGGCCTCAACACGCTGTTGGCCACAGCCTCGACCCGCGACTCCAGCCAGATCATCGTCGGCCAGC
GCCTGCGCAAGGGCTCAACCTCGTCAGCCCGGGGTGCTGACAAGTTCGTCGCCGACGCTCTGGCCACCACGACCCGAATCAACTCCGGCCTCCCAGCCCT
GGTCAGGGCTGATTCGGCGTACTACTCCTCGACTGTGACCAAAGCCGCCCGGGATGCCGGGGCTGAAGTATCGATCACGGTCCGCATGGACAAGAAGGTC
AAAGCAGCGATCGGAACAATCAGCGACGGCGCATGGACTGGCATCGAATACCCCGAAGCGATCTACGACGAAGAGACCAGGGCCTGGATTTCGAAGGCCG
AAGTCGCCGAGGTCCCGTTCACCGCATTCACCTCGAAGAAGAAGTCCCTGCACACCCCCGGCCGCTTGGTCGTCCGCCGCATCCCTGAACTCAACGAGAC
CAAACGCACTGCCGGGCAGGACCCATTGTTCGACTTGTACCGGTACCACGCGTTCTTCACCACCGTGGACAAAGACCGTTTCGACACCGTCGCTGCTGAT
CACATCCACCGCAAGCACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAACGGTGCCCTGGCACATATGCCCTCTGGGGTGTTCAACGCCAACGCCG
CCTGGGTCGCGATCGCAGCGATCACACACAACCTGCTGCGGGCTGCTGCCGGACTCATCGGTGGACGGATGAGCAAAGTGCGCGCTCAGACGCTGCGGAC
ACGGATCATCGGCATCCCGGCCCGGATCGCTCACCGGGCCAGGAAGCTGATTGTGCACCTGCCGAGACGGTGGCCGTGGGCGACGGAATTCGCACGACTC
TGGCACGCGGCTCTGAGCCCACCTACACGATCATTGTCCTGACCGATTCGCTCCTGCTCGAGCACGACGCCGCAGGGTCTGGAGGAGACCCCGGGGAATC
ATCTATGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCTCGCGCCGCGTTCGCACTCGAATCCGAGTGAGCCCCTTGCCATCAAGCGAAT
CGGTGGATCAAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1392 bp | 463 aa | 151 | 1542 | + | No |
Chemistry : DDE
ORF sequence :
MSHSFDDANLTATTGLVPIMSLAQMAGLPDLAEDRLTVTTTGADKGANPAPKLATLVAGMAAGADSIDDMNILRHGGMQHLFDRVYAPSTLGSFLRSFAF
GHVRQLDAISSRFLTNLNEHTPLLPASEDTGQAMVFVDVDDTVIDVHSASKQGAGFGYQGSRGLNTLLATASTRDSSQIIVGQRLRKGSTSSARGADKFV
ADALATTTRINSGLPALVRADSAYYSSTVTKAARDAGAEVSITVRMDKKVKAAIGTISDGAWTGIEYPEAIYDEETRAWISKAEVAEVPFTAFTSKKKSL
HTPGRLVVRRIPELNETKRTAGQDPLFDLYRYHAFFTTVDKDRFDTVAADHIHRKHAIIEQINAELKNGALAHMPSGVFNANAAWVAIAAITHNLLRAAA
GLIGGRMSKVRAQTLRTRIIGIPARIAHRARKLIVHLPRRWPWATEFARLWHAALSPPTRSLS
GHVRQLDAISSRFLTNLNEHTPLLPASEDTGQAMVFVDVDDTVIDVHSASKQGAGFGYQGSRGLNTLLATASTRDSSQIIVGQRLRKGSTSSARGADKFV
ADALATTTRINSGLPALVRADSAYYSSTVTKAARDAGAEVSITVRMDKKVKAAIGTISDGAWTGIEYPEAIYDEETRAWISKAEVAEVPFTAFTSKKKSL
HTPGRLVVRRIPELNETKRTAGQDPLFDLYRYHAFFTTVDKDRFDTVAADHIHRKHAIIEQINAELKNGALAHMPSGVFNANAAWVAIAAITHNLLRAAA
GLIGGRMSKVRAQTLRTRIIGIPARIAHRARKLIVHLPRRWPWATEFARLWHAALSPPTRSLS
Blast result :
Comments
ISBli4 is 71% aa similar to ISCef6.
References
1] ISfinder annotation (2009)
2] NCBI Microbial Genomes Annotation Project (2005).
2] NCBI Microbial Genomes Annotation Project (2005).