ISBli4

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAGP01000015 ND Brevibacterium linens
Brevibacterium linens BL2
Brevibacterium aurantiacum
DNA section
IS Length : 1713 bp

Ends


IR Length : 17/18

IRL : CCTTGATCCACCGATGCGAGTAGCCGGATCAAGCCGCGCGTGAAATGGAA
IRR : CCTTGATCCACCGATTCGCTTGATGGCAAGGGGCTCACTCGGATTCGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGCCTTCGGTAAGGGCCGGGCGA5

DNA sequence

CCTTGATCCACCGATGCGAGTAGCCGGATCAAGCCGCGCGTGAAATGGAAATGCCCCTTCTGAACTGGGAAAATGATGATGTTCGAAGTCAACATTCCCG
TTCAAGAAAGGGGCACCTCTCAGGTGCTATTCAACCACACACCCGCGTCTGTGTCTCACTCCTTCGACGATGCGAACCTGACGGCCACTACCGGGCTCGT
CCCGATCATGAGCCTCGCCCAGATGGCGGGCCTGCCAGACCTCGCCGAAGACCGTCTGACCGTGACCACCACCGGAGCCGACAAGGGCGCGAACCCGGCA
CCGAAACTGGCTACCCTGGTCGCGGGAATGGCTGCCGGGGCCGACTCGATCGATGACATGAACATCCTCCGCCACGGCGGCATGCAACACCTCTTCGATC
GTGTCTACGCGCCCTCGACCCTGGGGTCGTTCCTGCGCTCGTTCGCCTTCGGCCACGTCCGGCAACTCGACGCGATCTCTTCCCGTTTCCTGACCAACCT
CAACGAGCACACACCGCTGCTACCAGCCAGCGAAGACACTGGACAAGCGATGGTGTTCGTCGATGTCGACGACACCGTCATCGATGTTCACTCCGCGTCG
AAGCAGGGAGCCGGGTTCGGCTACCAAGGCAGTCGTGGCCTCAACACGCTGTTGGCCACAGCCTCGACCCGCGACTCCAGCCAGATCATCGTCGGCCAGC
GCCTGCGCAAGGGCTCAACCTCGTCAGCCCGGGGTGCTGACAAGTTCGTCGCCGACGCTCTGGCCACCACGACCCGAATCAACTCCGGCCTCCCAGCCCT
GGTCAGGGCTGATTCGGCGTACTACTCCTCGACTGTGACCAAAGCCGCCCGGGATGCCGGGGCTGAAGTATCGATCACGGTCCGCATGGACAAGAAGGTC
AAAGCAGCGATCGGAACAATCAGCGACGGCGCATGGACTGGCATCGAATACCCCGAAGCGATCTACGACGAAGAGACCAGGGCCTGGATTTCGAAGGCCG
AAGTCGCCGAGGTCCCGTTCACCGCATTCACCTCGAAGAAGAAGTCCCTGCACACCCCCGGCCGCTTGGTCGTCCGCCGCATCCCTGAACTCAACGAGAC
CAAACGCACTGCCGGGCAGGACCCATTGTTCGACTTGTACCGGTACCACGCGTTCTTCACCACCGTGGACAAAGACCGTTTCGACACCGTCGCTGCTGAT
CACATCCACCGCAAGCACGCGATCATCGAGCAGATCAATGCGGAGCTGAAGAACGGTGCCCTGGCACATATGCCCTCTGGGGTGTTCAACGCCAACGCCG
CCTGGGTCGCGATCGCAGCGATCACACACAACCTGCTGCGGGCTGCTGCCGGACTCATCGGTGGACGGATGAGCAAAGTGCGCGCTCAGACGCTGCGGAC
ACGGATCATCGGCATCCCGGCCCGGATCGCTCACCGGGCCAGGAAGCTGATTGTGCACCTGCCGAGACGGTGGCCGTGGGCGACGGAATTCGCACGACTC
TGGCACGCGGCTCTGAGCCCACCTACACGATCATTGTCCTGACCGATTCGCTCCTGCTCGAGCACGACGCCGCAGGGTCTGGAGGAGACCCCGGGGAATC
ATCTATGTGGAAGAGACCGGTGAGAGACCGGGACACTACTTCCTGCCCTCGCGCCGCGTTCGCACTCGAATCCGAGTGAGCCCCTTGCCATCAAGCGAAT
CGGTGGATCAAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1392 bp463 aa1511542+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHSFDDANLTATTGLVPIMSLAQMAGLPDLAEDRLTVTTTGADKGANPAPKLATLVAGMAAGADSIDDMNILRHGGMQHLFDRVYAPSTLGSFLRSFAF
GHVRQLDAISSRFLTNLNEHTPLLPASEDTGQAMVFVDVDDTVIDVHSASKQGAGFGYQGSRGLNTLLATASTRDSSQIIVGQRLRKGSTSSARGADKFV
ADALATTTRINSGLPALVRADSAYYSSTVTKAARDAGAEVSITVRMDKKVKAAIGTISDGAWTGIEYPEAIYDEETRAWISKAEVAEVPFTAFTSKKKSL
HTPGRLVVRRIPELNETKRTAGQDPLFDLYRYHAFFTTVDKDRFDTVAADHIHRKHAIIEQINAELKNGALAHMPSGVFNANAAWVAIAAITHNLLRAAA
GLIGGRMSKVRAQTLRTRIIGIPARIAHRARKLIVHLPRRWPWATEFARLWHAALSPPTRSLS

 

Blast result :
Comments
ISBli4 is 71% aa similar to ISCef6.
References
1] ISfinder annotation (2009)
2] NCBI Microbial Genomes Annotation Project (2005).