ISCef7

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004319 ND Corynebacterium efficiens
Corynebacterium efficiens YS-314 plasmid pCE2
DNA section
IS Length : 1687 bp

Ends


IR Length : 16/21

IRL : CCTGGATTCACCGATGTGACTCGAATCTAAGCGGCGTGGGAAAAAGAGAA
IRR : CCTGGATCCGCCGATGGTCCTTCGGTGATCGGTTGATTTCGGCTGCGGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAGAGCGTCTAAGAATGACCTGA5

DNA sequence

CCTGGATTCACCGATGTGACTCGAATCTAAGCGGCGTGGGAAAAAGAGAAATACCCTTCTGAACTGGGATAATCAAGCTTGTCTAGAGTTCGATTCTCCT
GCCAGAAAGGCACCTCACAGGTGCAAGTATCTCACACTCCCGCGGCACTCTCTATTTCCTTTGATGATCCCACCCTCGTGTCGGCCGCAGGCCTGGCCCC
GACCATGCGCCTGGCCGACAACGCTGGCCTGTCGACCCTGGCACAGCACCAGCTGACTGTGGCAGGTGACAAGGGTGCCAACGCCGGGGCGAAGATCACC
TCACTGATCGCCGGCATGGTCGCAGGGGCCGACTCGATCAACGACATGGACCTGCTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCAC
CCTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGACATGTCCGTCAGTTGGATGCCGTGGCCTCCCGGTTCCTGATCAACCTGGCAGTGCAGGC
ACCAGCCCTGGTACCCGCCCCGGCTGCCACCAGCGGGTATGTCTTCGTCGATGTTGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGTGGGCTCAATGCGCTGCTGGCCACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCCGCG
GGTCCTGTGGCTCCCCGCGTGGGGCAGGCCGGTTGATTGCTGATGCGATCACCACCACCCGGCGGTTACCGGGACTCCAGCACCAGAAGATCCTGGTGCG
GGCTGATTCCGCCTTCTACGGCTCCCCCAGCATCCACGCAGCACTCACAGCCGGTGCGGATGTGTCGGTTACCGCGCGGATGACGAGGAATATCCGCCAG
GCGATCACCACGATCCCGGATACGTCCTGGGAGACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGACCTGGATCTCCTCAGCAGAAGTCG
CGGAAGTCCCCTTCACCGCGTTTGCGTCGAAGCCGGAGGTCGATCAGGTTCCTGGACGGCTGGTGGTCCGCCGGATCCCGGAACTCAACCCCAAGAAGAA
TGTGGATCAGCCGGGACTATTTGATCTGCACCGCTTCCACGCGGTGTTCACCACCGCTGACCCCGCACTGCTCGATACCGTTGCCGCGGACAAGACCCAC
CGCCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGCGCCCTGGCGCATATGCCATCCGGGAAGTTCACCGCGAACGCGGCGTGGCTGG
TGTGTGCGGTCATGGCCTTCAACCTCACCCGCGCTGCCGGGGTCGTTGCTGCGGGGGCGCTGGCCAGGGCTACGACAGCGACGATCCGGCATCAGATCAT
CGCGGTGGCGGCCCGGGTGGTGCGTCGGTCCCGGCGACTGGTGCTGCACCTGCCGGAGGGCTGGAGGTGGCAAGCCCAGTGGCGGAGACTGTTCGATCAC
GGTCACTCGCCGCCGGTGGTTGTTTCTTCCTGACCACCTGCGCCGGATTCCTTCGGCCCGAGCTGAACTACCAATTCGTGGAACGACCAGACGACGACGT
GATCTGGGGATCACCCCTGCCCGAAATCCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1413 bp470 aa1211533+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVSHTPAALSISFDDPTLVSAAGLAPTMRLADNAGLSTLAQHQLTVAGDKGANAGAKITSLIAGMVAGADSINDMDLLRHGGMNRLFTRIYAPSTLGSF
LRAFTFGHVRQLDAVASRFLINLAVQAPALVPAPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTTESAPVVVAQRLRRGSCGSPR
GAGRLIADAITTTRRLPGLQHQKILVRADSAFYGSPSIHAALTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQTWISSAEVAEVPFTA
FASKPEVDQVPGRLVVRRIPELNPKKNVDQPGLFDLHRFHAVFTTADPALLDTVAADKTHRQHAVIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAF
NLTRAAGVVAAGALARATTATIRHQIIAVAARVVRRSRRLVLHLPEGWRWQAQWRRLFDHGHSPPVVVSS

 

Blast result :
Comments
ISCef7 is 94% aa similar to ISCef6.
References
1] ISfinder annotation (2009)
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H.(2002) Direct submission GenBank.