ISCef7
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004319 | ND | Corynebacterium efficiens | Corynebacterium efficiens YS-314 plasmid pCE2 |
DNA section
IS Length : 1687 bp
Ends
IR Length : 16/21
IRL : CCTGGATTCACCGATGTGACTCGAATCTAAGCGGCGTGGGAAAAAGAGAA
IRR : CCTGGATCCGCCGATGGTCCTTCGGTGATCGGTTGATTTCGGCTGCGGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAGAGCGT | CTAAG | AATGACCTGA | 5 |
DNA sequence
CCTGGATTCACCGATGTGACTCGAATCTAAGCGGCGTGGGAAAAAGAGAAATACCCTTCTGAACTGGGATAATCAAGCTTGTCTAGAGTTCGATTCTCCT
GCCAGAAAGGCACCTCACAGGTGCAAGTATCTCACACTCCCGCGGCACTCTCTATTTCCTTTGATGATCCCACCCTCGTGTCGGCCGCAGGCCTGGCCCC
GACCATGCGCCTGGCCGACAACGCTGGCCTGTCGACCCTGGCACAGCACCAGCTGACTGTGGCAGGTGACAAGGGTGCCAACGCCGGGGCGAAGATCACC
TCACTGATCGCCGGCATGGTCGCAGGGGCCGACTCGATCAACGACATGGACCTGCTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCAC
CCTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGACATGTCCGTCAGTTGGATGCCGTGGCCTCCCGGTTCCTGATCAACCTGGCAGTGCAGGC
ACCAGCCCTGGTACCCGCCCCGGCTGCCACCAGCGGGTATGTCTTCGTCGATGTTGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGTGGGCTCAATGCGCTGCTGGCCACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCCGCG
GGTCCTGTGGCTCCCCGCGTGGGGCAGGCCGGTTGATTGCTGATGCGATCACCACCACCCGGCGGTTACCGGGACTCCAGCACCAGAAGATCCTGGTGCG
GGCTGATTCCGCCTTCTACGGCTCCCCCAGCATCCACGCAGCACTCACAGCCGGTGCGGATGTGTCGGTTACCGCGCGGATGACGAGGAATATCCGCCAG
GCGATCACCACGATCCCGGATACGTCCTGGGAGACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGACCTGGATCTCCTCAGCAGAAGTCG
CGGAAGTCCCCTTCACCGCGTTTGCGTCGAAGCCGGAGGTCGATCAGGTTCCTGGACGGCTGGTGGTCCGCCGGATCCCGGAACTCAACCCCAAGAAGAA
TGTGGATCAGCCGGGACTATTTGATCTGCACCGCTTCCACGCGGTGTTCACCACCGCTGACCCCGCACTGCTCGATACCGTTGCCGCGGACAAGACCCAC
CGCCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGCGCCCTGGCGCATATGCCATCCGGGAAGTTCACCGCGAACGCGGCGTGGCTGG
TGTGTGCGGTCATGGCCTTCAACCTCACCCGCGCTGCCGGGGTCGTTGCTGCGGGGGCGCTGGCCAGGGCTACGACAGCGACGATCCGGCATCAGATCAT
CGCGGTGGCGGCCCGGGTGGTGCGTCGGTCCCGGCGACTGGTGCTGCACCTGCCGGAGGGCTGGAGGTGGCAAGCCCAGTGGCGGAGACTGTTCGATCAC
GGTCACTCGCCGCCGGTGGTTGTTTCTTCCTGACCACCTGCGCCGGATTCCTTCGGCCCGAGCTGAACTACCAATTCGTGGAACGACCAGACGACGACGT
GATCTGGGGATCACCCCTGCCCGAAATCCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
GCCAGAAAGGCACCTCACAGGTGCAAGTATCTCACACTCCCGCGGCACTCTCTATTTCCTTTGATGATCCCACCCTCGTGTCGGCCGCAGGCCTGGCCCC
GACCATGCGCCTGGCCGACAACGCTGGCCTGTCGACCCTGGCACAGCACCAGCTGACTGTGGCAGGTGACAAGGGTGCCAACGCCGGGGCGAAGATCACC
TCACTGATCGCCGGCATGGTCGCAGGGGCCGACTCGATCAACGACATGGACCTGCTGCGCCACGGCGGCATGAACCGACTCTTTACCCGGATCTACGCAC
CCTCGACCCTGGGATCCTTCCTCCGGGCCTTCACCTTCGGACATGTCCGTCAGTTGGATGCCGTGGCCTCCCGGTTCCTGATCAACCTGGCAGTGCAGGC
ACCAGCCCTGGTACCCGCCCCGGCTGCCACCAGCGGGTATGTCTTCGTCGATGTTGACGACACCATCATCGAAGTCCACGGCCACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGTGGGCTCAATGCGCTGCTGGCCACGGTCACCACGACAGAGTCTGCCCCGGTGGTCGTAGCCCAGCGCCTGCGCCGCG
GGTCCTGTGGCTCCCCGCGTGGGGCAGGCCGGTTGATTGCTGATGCGATCACCACCACCCGGCGGTTACCGGGACTCCAGCACCAGAAGATCCTGGTGCG
GGCTGATTCCGCCTTCTACGGCTCCCCCAGCATCCACGCAGCACTCACAGCCGGTGCGGATGTGTCGGTTACCGCGCGGATGACGAGGAATATCCGCCAG
GCGATCACCACGATCCCGGATACGTCCTGGGAGACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGACCTGGATCTCCTCAGCAGAAGTCG
CGGAAGTCCCCTTCACCGCGTTTGCGTCGAAGCCGGAGGTCGATCAGGTTCCTGGACGGCTGGTGGTCCGCCGGATCCCGGAACTCAACCCCAAGAAGAA
TGTGGATCAGCCGGGACTATTTGATCTGCACCGCTTCCACGCGGTGTTCACCACCGCTGACCCCGCACTGCTCGATACCGTTGCCGCGGACAAGACCCAC
CGCCAGCATGCGGTCATCGAGCAGGTCAACGCCGATCTGAAGAACAGCGCCCTGGCGCATATGCCATCCGGGAAGTTCACCGCGAACGCGGCGTGGCTGG
TGTGTGCGGTCATGGCCTTCAACCTCACCCGCGCTGCCGGGGTCGTTGCTGCGGGGGCGCTGGCCAGGGCTACGACAGCGACGATCCGGCATCAGATCAT
CGCGGTGGCGGCCCGGGTGGTGCGTCGGTCCCGGCGACTGGTGCTGCACCTGCCGGAGGGCTGGAGGTGGCAAGCCCAGTGGCGGAGACTGTTCGATCAC
GGTCACTCGCCGCCGGTGGTTGTTTCTTCCTGACCACCTGCGCCGGATTCCTTCGGCCCGAGCTGAACTACCAATTCGTGGAACGACCAGACGACGACGT
GATCTGGGGATCACCCCTGCCCGAAATCCTTGGTGGTGCCCGCAGCCGAAATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1413 bp | 470 aa | 121 | 1533 | + | No |
Chemistry : DDE
ORF sequence :
MQVSHTPAALSISFDDPTLVSAAGLAPTMRLADNAGLSTLAQHQLTVAGDKGANAGAKITSLIAGMVAGADSINDMDLLRHGGMNRLFTRIYAPSTLGSF
LRAFTFGHVRQLDAVASRFLINLAVQAPALVPAPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTTESAPVVVAQRLRRGSCGSPR
GAGRLIADAITTTRRLPGLQHQKILVRADSAFYGSPSIHAALTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQTWISSAEVAEVPFTA
FASKPEVDQVPGRLVVRRIPELNPKKNVDQPGLFDLHRFHAVFTTADPALLDTVAADKTHRQHAVIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAF
NLTRAAGVVAAGALARATTATIRHQIIAVAARVVRRSRRLVLHLPEGWRWQAQWRRLFDHGHSPPVVVSS
LRAFTFGHVRQLDAVASRFLINLAVQAPALVPAPAATSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTTESAPVVVAQRLRRGSCGSPR
GAGRLIADAITTTRRLPGLQHQKILVRADSAFYGSPSIHAALTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQTWISSAEVAEVPFTA
FASKPEVDQVPGRLVVRRIPELNPKKNVDQPGLFDLHRFHAVFTTADPALLDTVAADKTHRQHAVIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAF
NLTRAAGVVAAGALARATTATIRHQIIAVAARVVRRSRRLVLHLPEGWRWQAQWRRLFDHGHSPPVVVSS
Blast result :
Comments
ISCef7 is 94% aa similar to ISCef6.
References
1] ISfinder annotation (2009)
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H.(2002) Direct submission GenBank.
2] Kawarabayasi,Y., Yamazaki,J., Hino,Y. and Kikuchi,H.(2002) Direct submission GenBank.