ISMaa1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAOB01000017 | ND | Marine actinobacterium | Marine actinobacterium PHSC20C1 |
DNA section
IS Length : 1650 bp
Ends
IR Length : 17/18
IRL : CCTGAATCCACCGGTCTGACCTTGGGTTCAACGGCGCGTTAAATAGAGAA
IRR : CCTGAATCCACCGGTCCGGTTTAGTGAGCACGGTCGTTTCGGTTTGATCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGGTGCCCC | CTAAG | TAATCTAGAG | 5 |
DNA sequence
CCTGAATCCACCGGTCTGACCTTGGGTTCAACGGCGCGTTAAATAGAGAATGCCTATCTGGTCAGGGAAAATTGTTCTTACCACAGTCCAATTCGACCCA
AGAAGAGAGGCATCTCTTAGATGCAACTTTCCCACAAGAATTCCGTCCTGTCAGCGAGGTTCGACGACACAAATCTCGTGTCGGCCGCCGGCCTCATCCC
CGCGATGGCCTTGGCTGTAAAAACAGGTCTCGGCGACCTCACCAACAAGCACCTTCACCTGCCCGGCTACTTCGGCGCGAACGCGGGCCTGAAAGTCACC
GCCCTAGTCGCAGGGATGGTCGCTGGGGCCGACTCCATCGATGACATGGCGTTGCTGCGCCACGGAGGGATGAAGAAACTCTTCACCGGCGCGTACGCCC
CATCGACACTCGGTTCGTTCCTCCGGGCATTCACGTTCGGTCACGTCCGCCAGCTCGATGCGGCCGCGTGGCGGTGGCTCGTGAACCTCGCCGACACCGC
GCCGATCGTGGCCGGTATCGATGAGTTCGCTCTCGTCGATATCGATGGCACCATCAAAGAAGTCCACGGGTATCAGAAACAGGGCTCCGGGTACGGCTAC
TCCGGAGTCCGCGGCCTGAACGCTCTCATCGGTATCGTCTCGACCCCGAGCGCGGCGCTGATGATCCTCGGGTCCCGGCTCCGCAAGGGCACTGCCGGCT
CCCCACGCGGGGCGAAACGGTTCGTCGCCGATATCCTCGCGACCGTGCGCCGGCTCCGCACTGCTACCGCGTCGGGGTCGGTGTTGTTGCGCGCCGACAG
CGCGTTCTATGGTCACGCGGTCGTGTCCGCGGCGCACCTTACCGGGGCGAAGGTCTCCATCACGGCCCGCATGGATCCGGCCGTGAAGCGTGCCATCGGC
ACGATCGCTGACGGCGCGTGGACAACTATCCAATACACGAACGCGATCCTCGACGAGTCCTCAGGGAAGTGGGTTTCTGTCGCTGAAGTTGCCGAGGTTC
CGTTCACCGCGTTCAGCAGCCGGAAGAAGACCGACCACATCGTGGGTCGTCTCGTGGTGCGCCGGATCCCGGAGCTGAATCCCAAAGAAGCGTCCGGGCA
AGCGACCCTGTTCGATACCCACCGGTTCCACGCGTTCTTCACCACGTCGGATCTCGACACCGTGACCGCGGATAAGACGCATCGCGGCCATGCGATCATC
GAACAGATTAACGCCGATTTGAAAGACAGCGCCCTGGCTCATCTGCCGTCGGGGATCTTCGCCGCGAACGCGGCATGGCTCGCGTTGGCGACGATGGCCT
TCAACCTGTCTCGCGCGGTCGGGACTATGACGGGCACTGATCTTCGCAAGGCCAGAACGGGTACGATTCTCCGCAAAATCATCCAGGTCCCGGCCCGAAT
CTCGACCTCAGCACGCCAAGTGCGTCTGCATTTGCCGACCGGGTGGCCTTGGGAGGCGGCATGGTCGACGCTGTTCGCGGCGGCCTGCGGCCCGCCACGA
ACAGCGTCCAACTGACCATCCCGCCACCCGGCCTGAAGAACCACGGAACATCATCGGCAGCAAGGCCGGACGCACCGTCATGCCCGCTGCCACGAAACTC
AGATCAAACCGAAACGACCGTGCTCACTAAACCGGACCGGTGGATTCAGG
AGAAGAGAGGCATCTCTTAGATGCAACTTTCCCACAAGAATTCCGTCCTGTCAGCGAGGTTCGACGACACAAATCTCGTGTCGGCCGCCGGCCTCATCCC
CGCGATGGCCTTGGCTGTAAAAACAGGTCTCGGCGACCTCACCAACAAGCACCTTCACCTGCCCGGCTACTTCGGCGCGAACGCGGGCCTGAAAGTCACC
GCCCTAGTCGCAGGGATGGTCGCTGGGGCCGACTCCATCGATGACATGGCGTTGCTGCGCCACGGAGGGATGAAGAAACTCTTCACCGGCGCGTACGCCC
CATCGACACTCGGTTCGTTCCTCCGGGCATTCACGTTCGGTCACGTCCGCCAGCTCGATGCGGCCGCGTGGCGGTGGCTCGTGAACCTCGCCGACACCGC
GCCGATCGTGGCCGGTATCGATGAGTTCGCTCTCGTCGATATCGATGGCACCATCAAAGAAGTCCACGGGTATCAGAAACAGGGCTCCGGGTACGGCTAC
TCCGGAGTCCGCGGCCTGAACGCTCTCATCGGTATCGTCTCGACCCCGAGCGCGGCGCTGATGATCCTCGGGTCCCGGCTCCGCAAGGGCACTGCCGGCT
CCCCACGCGGGGCGAAACGGTTCGTCGCCGATATCCTCGCGACCGTGCGCCGGCTCCGCACTGCTACCGCGTCGGGGTCGGTGTTGTTGCGCGCCGACAG
CGCGTTCTATGGTCACGCGGTCGTGTCCGCGGCGCACCTTACCGGGGCGAAGGTCTCCATCACGGCCCGCATGGATCCGGCCGTGAAGCGTGCCATCGGC
ACGATCGCTGACGGCGCGTGGACAACTATCCAATACACGAACGCGATCCTCGACGAGTCCTCAGGGAAGTGGGTTTCTGTCGCTGAAGTTGCCGAGGTTC
CGTTCACCGCGTTCAGCAGCCGGAAGAAGACCGACCACATCGTGGGTCGTCTCGTGGTGCGCCGGATCCCGGAGCTGAATCCCAAAGAAGCGTCCGGGCA
AGCGACCCTGTTCGATACCCACCGGTTCCACGCGTTCTTCACCACGTCGGATCTCGACACCGTGACCGCGGATAAGACGCATCGCGGCCATGCGATCATC
GAACAGATTAACGCCGATTTGAAAGACAGCGCCCTGGCTCATCTGCCGTCGGGGATCTTCGCCGCGAACGCGGCATGGCTCGCGTTGGCGACGATGGCCT
TCAACCTGTCTCGCGCGGTCGGGACTATGACGGGCACTGATCTTCGCAAGGCCAGAACGGGTACGATTCTCCGCAAAATCATCCAGGTCCCGGCCCGAAT
CTCGACCTCAGCACGCCAAGTGCGTCTGCATTTGCCGACCGGGTGGCCTTGGGAGGCGGCATGGTCGACGCTGTTCGCGGCGGCCTGCGGCCCGCCACGA
ACAGCGTCCAACTGACCATCCCGCCACCCGGCCTGAAGAACCACGGAACATCATCGGCAGCAAGGCCGGACGCACCGTCATGCCCGCTGCCACGAAACTC
AGATCAAACCGAAACGACCGTGCTCACTAAACCGGACCGGTGGATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1395 bp | 464 aa | 121 | 1515 | + | No |
Chemistry : DDE
ORF sequence :
MQLSHKNSVLSARFDDTNLVSAAGLIPAMALAVKTGLGDLTNKHLHLPGYFGANAGLKVTALVAGMVAGADSIDDMALLRHGGMKKLFTGAYAPSTLGSF
LRAFTFGHVRQLDAAAWRWLVNLADTAPIVAGIDEFALVDIDGTIKEVHGYQKQGSGYGYSGVRGLNALIGIVSTPSAALMILGSRLRKGTAGSPRGAKR
FVADILATVRRLRTATASGSVLLRADSAFYGHAVVSAAHLTGAKVSITARMDPAVKRAIGTIADGAWTTIQYTNAILDESSGKWVSVAEVAEVPFTAFSS
RKKTDHIVGRLVVRRIPELNPKEASGQATLFDTHRFHAFFTTSDLDTVTADKTHRGHAIIEQINADLKDSALAHLPSGIFAANAAWLALATMAFNLSRAV
GTMTGTDLRKARTGTILRKIIQVPARISTSARQVRLHLPTGWPWEAAWSTLFAAACGPPRTASN
LRAFTFGHVRQLDAAAWRWLVNLADTAPIVAGIDEFALVDIDGTIKEVHGYQKQGSGYGYSGVRGLNALIGIVSTPSAALMILGSRLRKGTAGSPRGAKR
FVADILATVRRLRTATASGSVLLRADSAFYGHAVVSAAHLTGAKVSITARMDPAVKRAIGTIADGAWTTIQYTNAILDESSGKWVSVAEVAEVPFTAFSS
RKKTDHIVGRLVVRRIPELNPKEASGQATLFDTHRFHAFFTTSDLDTVTADKTHRGHAIIEQINADLKDSALAHLPSGIFAANAAWLALATMAFNLSRAV
GTMTGTDLRKARTGTILRKIIQVPARISTSARQVRLHLPTGWPWEAAWSTLFAAACGPPRTASN
Blast result :
Comments
ISMaa1 is 71% aa siumilar to IS1677.
References
1] ISfinder annotation (2009)
2] Murray,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission.
2] Murray,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission.