ISCef6

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004369 ND Corynebacterium efficiens
Corynebacterium efficiens YS-314
DNA section
IS Length : 1684 bp

Ends


IR Length : 14/16

IRL : CCTGGATACACCGATGTGATTTAGGGGTAGCGGCGTGGGAAAAAGAGAAA
IRR : CCTGGATCCGCCGATGGTCCTTCGGTGATCGGTTGATCTCAGCTGAGGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCATTTACCACTTAGATGATTTTTC5
TTCCATTTAGCTTAGGAGGA0
CCGTTTATCCCTAAGAATCCTCGGG5
GTGTCATTTGTTAAGGCCTTGAAGC5

DNA sequence

CCTGGATACACCGATGTGATTTAGGGGTAGCGGCGTGGGAAAAAGAGAAACGCCCTTCTGAACTGGGATAATACGACTTGTCGAAGGTCTGTATTCCCCA
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACCCCCGCAGCCATATCCATTTCCTTTGATGACCCCACCCTCGTGTCGTCTGCAGGCCTGGTCCC
GACCATGCGCCTGGCTGATGCCGCAGGGCTGTCAGCCCTGGCGCAGCACCGGATGACTGTGCCAGGCGACAAGGGCGCCAATGCCGGGGCGAAGATCACC
TCCCTGATCGCCGGGATGGTCGCCGGTGCCGACTCGATTGACGACATGGATCTGCTGCGCCACGGCGGCATGAACCGACTGTTTAGCCGGATCTACGCAC
CCTCGACCCTGGGTTCCTTCCTCCGGGCCTTCACCTTCGGGCATGTCCGCCAACTCGACGCCGTCGCCTCCCGGTTCCTGATCAACCTGGCGGACCAGGC
ACCTACCCTGGTACCCGACCCGGCTACCACCAGCGGGTACGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGACACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGCGGACTCAACGCCCTGCTGGCGACTGTCACCACAAGGGAGTCCGCCCCGGTGATCGTGGCCCAACGCCTGCGCCGCG
GGGCCTGTGGCTCCCCGCGTGGTGCCGGCCGGTTGATCGCCGATGCCATCACCACCACCCGACGCCTACCGGCCATGGCAGGGCAGAAGATCCTGATGCG
CGCTGACTCCGCGTTCTACAGCCGTTCCAGCATCCACGCAGCACGCACCGCAGGTGCGGATGTGTCGGTCACCGCGCGGATGACGCGCAACATCCGCCAG
GCGATCACCACGATCCCGGACACCTCCTGGGAAACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGGCCTGGATCTCCTCAGCAGAAGTCG
CAGAAATCCCCTTCGTTGCTTTTGCATCGAAGCCGGAGGCAGATCAGGTCCCCGGACGTCTGGTGGTCCGCCGGATACCGGAGTTGAACAAGAAGGACGT
GGATCAGCCCGGCCTGTTTGATCTGCACCGTTTCCACGCGGTGTTCACCACCGCCGACCCAGACATCCTCGATACCGTGGCCGCGGATAAAACCCACCGG
CAGCACGCGATCATTGAGCAGGTCAACGCCGATCTGAAGAATAGCGCCCTGGCGCATATGCCATCAGGGAAATTCACCGCGAATGCGGCGTGGTTGGTAT
GCGCGGTCATGGCCTTCAACCTCACCCGCGCGGCCGGGGTCATTGCTGGTACCAGCCTGGCCAGGGCCACGACTGCGACGATCCGGCGTCGGATCGTCAT
CGTGGCGGCCCGGGTGGCGCGTCGGTCCCGGCGATTGGTGCTGCACCTGCCGGAGGGCTGGAAATGGGAAGCCCAGTGGCGGAAGCTGTTCACCCACGGT
CACTCGCCTCCGGTGGCTGTCCCCGCCTGACCACCTGCGCCGAAGTCCTTCGGCCCGAGCTGACCTACCAATTCGTGGAACAACCAGACGACGACGTGAT
CTGGGGATCACTCCTGCCCGAAAATCTTGGTGGTTCCCTCAGCTGAGATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1410 bp469 aa1211530+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQLSHTPAAISISFDDPTLVSSAGLVPTMRLADAAGLSALAQHRMTVPGDKGANAGAKITSLIAGMVAGADSIDDMDLLRHGGMNRLFSRIYAPSTLGSF
LRAFTFGHVRQLDAVASRFLINLADQAPTLVPDPATTSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTRESAPVIVAQRLRRGACGSPR
GAGRLIADAITTTRRLPAMAGQKILMRADSAFYSRSSIHAARTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQAWISSAEVAEIPFVA
FASKPEADQVPGRLVVRRIPELNKKDVDQPGLFDLHRFHAVFTTADPDILDTVAADKTHRQHAIIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAFN
LTRAAGVIAGTSLARATTATIRRRIVIVAARVARRSRRLVLHLPEGWKWEAQWRKLFTHGHSPPVAVPA

 

Blast result :
Comments
ISCef6 is 86% aa similar to IS1677.
References
1] ISfinder annotation (2009)
2] Nishio,Y., Nakamura,Y., Kawarabayasi,Y., Usuda,Y., Kimura,E., Sugimoto,S., Matsui,K., Yamagishi,A., Kikuchi,H., Ikeo,K. and Gojobori,T. (2003) Genome Res. 13 (7), 1572-1579