ISCef6
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004369 | ND | Corynebacterium efficiens | Corynebacterium efficiens YS-314 |
DNA section
IS Length : 1684 bp
Ends
IR Length : 14/16
IRL : CCTGGATACACCGATGTGATTTAGGGGTAGCGGCGTGGGAAAAAGAGAAA
IRR : CCTGGATCCGCCGATGGTCCTTCGGTGATCGGTTGATCTCAGCTGAGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCATTTACCA | CTTAG | ATGATTTTTC | 5 |
TTCCATTTAG | CTTAGGAGGA | 0 | |
CCGTTTATCC | CTAAG | AATCCTCGGG | 5 |
GTGTCATTTG | TTAAG | GCCTTGAAGC | 5 |
DNA sequence
CCTGGATACACCGATGTGATTTAGGGGTAGCGGCGTGGGAAAAAGAGAAACGCCCTTCTGAACTGGGATAATACGACTTGTCGAAGGTCTGTATTCCCCA
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACCCCCGCAGCCATATCCATTTCCTTTGATGACCCCACCCTCGTGTCGTCTGCAGGCCTGGTCCC
GACCATGCGCCTGGCTGATGCCGCAGGGCTGTCAGCCCTGGCGCAGCACCGGATGACTGTGCCAGGCGACAAGGGCGCCAATGCCGGGGCGAAGATCACC
TCCCTGATCGCCGGGATGGTCGCCGGTGCCGACTCGATTGACGACATGGATCTGCTGCGCCACGGCGGCATGAACCGACTGTTTAGCCGGATCTACGCAC
CCTCGACCCTGGGTTCCTTCCTCCGGGCCTTCACCTTCGGGCATGTCCGCCAACTCGACGCCGTCGCCTCCCGGTTCCTGATCAACCTGGCGGACCAGGC
ACCTACCCTGGTACCCGACCCGGCTACCACCAGCGGGTACGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGACACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGCGGACTCAACGCCCTGCTGGCGACTGTCACCACAAGGGAGTCCGCCCCGGTGATCGTGGCCCAACGCCTGCGCCGCG
GGGCCTGTGGCTCCCCGCGTGGTGCCGGCCGGTTGATCGCCGATGCCATCACCACCACCCGACGCCTACCGGCCATGGCAGGGCAGAAGATCCTGATGCG
CGCTGACTCCGCGTTCTACAGCCGTTCCAGCATCCACGCAGCACGCACCGCAGGTGCGGATGTGTCGGTCACCGCGCGGATGACGCGCAACATCCGCCAG
GCGATCACCACGATCCCGGACACCTCCTGGGAAACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGGCCTGGATCTCCTCAGCAGAAGTCG
CAGAAATCCCCTTCGTTGCTTTTGCATCGAAGCCGGAGGCAGATCAGGTCCCCGGACGTCTGGTGGTCCGCCGGATACCGGAGTTGAACAAGAAGGACGT
GGATCAGCCCGGCCTGTTTGATCTGCACCGTTTCCACGCGGTGTTCACCACCGCCGACCCAGACATCCTCGATACCGTGGCCGCGGATAAAACCCACCGG
CAGCACGCGATCATTGAGCAGGTCAACGCCGATCTGAAGAATAGCGCCCTGGCGCATATGCCATCAGGGAAATTCACCGCGAATGCGGCGTGGTTGGTAT
GCGCGGTCATGGCCTTCAACCTCACCCGCGCGGCCGGGGTCATTGCTGGTACCAGCCTGGCCAGGGCCACGACTGCGACGATCCGGCGTCGGATCGTCAT
CGTGGCGGCCCGGGTGGCGCGTCGGTCCCGGCGATTGGTGCTGCACCTGCCGGAGGGCTGGAAATGGGAAGCCCAGTGGCGGAAGCTGTTCACCCACGGT
CACTCGCCTCCGGTGGCTGTCCCCGCCTGACCACCTGCGCCGAAGTCCTTCGGCCCGAGCTGACCTACCAATTCGTGGAACAACCAGACGACGACGTGAT
CTGGGGATCACTCCTGCCCGAAAATCTTGGTGGTTCCCTCAGCTGAGATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
TCCAGGAGGGCATCTCTCAGGTGCAACTATCTCACACCCCCGCAGCCATATCCATTTCCTTTGATGACCCCACCCTCGTGTCGTCTGCAGGCCTGGTCCC
GACCATGCGCCTGGCTGATGCCGCAGGGCTGTCAGCCCTGGCGCAGCACCGGATGACTGTGCCAGGCGACAAGGGCGCCAATGCCGGGGCGAAGATCACC
TCCCTGATCGCCGGGATGGTCGCCGGTGCCGACTCGATTGACGACATGGATCTGCTGCGCCACGGCGGCATGAACCGACTGTTTAGCCGGATCTACGCAC
CCTCGACCCTGGGTTCCTTCCTCCGGGCCTTCACCTTCGGGCATGTCCGCCAACTCGACGCCGTCGCCTCCCGGTTCCTGATCAACCTGGCGGACCAGGC
ACCTACCCTGGTACCCGACCCGGCTACCACCAGCGGGTACGTCTTCGTCGATGTCGACGACACCATCATCGAAGTCCACGGACACCAGAAACAAGGCGCC
GGCTTCGGCTACTCCGGTATCCGCGGACTCAACGCCCTGCTGGCGACTGTCACCACAAGGGAGTCCGCCCCGGTGATCGTGGCCCAACGCCTGCGCCGCG
GGGCCTGTGGCTCCCCGCGTGGTGCCGGCCGGTTGATCGCCGATGCCATCACCACCACCCGACGCCTACCGGCCATGGCAGGGCAGAAGATCCTGATGCG
CGCTGACTCCGCGTTCTACAGCCGTTCCAGCATCCACGCAGCACGCACCGCAGGTGCGGATGTGTCGGTCACCGCGCGGATGACGCGCAACATCCGCCAG
GCGATCACCACGATCCCGGACACCTCCTGGGAAACAATTGAGTACACCGACGCACTCTTCGACGAGGACACCCAGGCCTGGATCTCCTCAGCAGAAGTCG
CAGAAATCCCCTTCGTTGCTTTTGCATCGAAGCCGGAGGCAGATCAGGTCCCCGGACGTCTGGTGGTCCGCCGGATACCGGAGTTGAACAAGAAGGACGT
GGATCAGCCCGGCCTGTTTGATCTGCACCGTTTCCACGCGGTGTTCACCACCGCCGACCCAGACATCCTCGATACCGTGGCCGCGGATAAAACCCACCGG
CAGCACGCGATCATTGAGCAGGTCAACGCCGATCTGAAGAATAGCGCCCTGGCGCATATGCCATCAGGGAAATTCACCGCGAATGCGGCGTGGTTGGTAT
GCGCGGTCATGGCCTTCAACCTCACCCGCGCGGCCGGGGTCATTGCTGGTACCAGCCTGGCCAGGGCCACGACTGCGACGATCCGGCGTCGGATCGTCAT
CGTGGCGGCCCGGGTGGCGCGTCGGTCCCGGCGATTGGTGCTGCACCTGCCGGAGGGCTGGAAATGGGAAGCCCAGTGGCGGAAGCTGTTCACCCACGGT
CACTCGCCTCCGGTGGCTGTCCCCGCCTGACCACCTGCGCCGAAGTCCTTCGGCCCGAGCTGACCTACCAATTCGTGGAACAACCAGACGACGACGTGAT
CTGGGGATCACTCCTGCCCGAAAATCTTGGTGGTTCCCTCAGCTGAGATCAACCGATCACCGAAGGACCATCGGCGGATCCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 121 | 1530 | + | No |
Chemistry : DDE
ORF sequence :
MQLSHTPAAISISFDDPTLVSSAGLVPTMRLADAAGLSALAQHRMTVPGDKGANAGAKITSLIAGMVAGADSIDDMDLLRHGGMNRLFSRIYAPSTLGSF
LRAFTFGHVRQLDAVASRFLINLADQAPTLVPDPATTSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTRESAPVIVAQRLRRGACGSPR
GAGRLIADAITTTRRLPAMAGQKILMRADSAFYSRSSIHAARTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQAWISSAEVAEIPFVA
FASKPEADQVPGRLVVRRIPELNKKDVDQPGLFDLHRFHAVFTTADPDILDTVAADKTHRQHAIIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAFN
LTRAAGVIAGTSLARATTATIRRRIVIVAARVARRSRRLVLHLPEGWKWEAQWRKLFTHGHSPPVAVPA
LRAFTFGHVRQLDAVASRFLINLADQAPTLVPDPATTSGYVFVDVDDTIIEVHGHQKQGAGFGYSGIRGLNALLATVTTRESAPVIVAQRLRRGACGSPR
GAGRLIADAITTTRRLPAMAGQKILMRADSAFYSRSSIHAARTAGADVSVTARMTRNIRQAITTIPDTSWETIEYTDALFDEDTQAWISSAEVAEIPFVA
FASKPEADQVPGRLVVRRIPELNKKDVDQPGLFDLHRFHAVFTTADPDILDTVAADKTHRQHAIIEQVNADLKNSALAHMPSGKFTANAAWLVCAVMAFN
LTRAAGVIAGTSLARATTATIRRRIVIVAARVARRSRRLVLHLPEGWKWEAQWRKLFTHGHSPPVAVPA
Blast result :
Comments
ISCef6 is 86% aa similar to IS1677.
References
1] ISfinder annotation (2009)
2] Nishio,Y., Nakamura,Y., Kawarabayasi,Y., Usuda,Y., Kimura,E., Sugimoto,S., Matsui,K., Yamagishi,A., Kikuchi,H., Ikeo,K. and Gojobori,T. (2003) Genome Res. 13 (7), 1572-1579
2] Nishio,Y., Nakamura,Y., Kawarabayasi,Y., Usuda,Y., Kimura,E., Sugimoto,S., Matsui,K., Yamagishi,A., Kikuchi,H., Ikeo,K. and Gojobori,T. (2003) Genome Res. 13 (7), 1572-1579