ISCgl4
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003450 | ND | Corynebacterium glutamicum | Corynebacterium glutamicum ATCC 13032 |
DNA section
IS Length : 1653 bp
Ends
IR Length : 22/27
IRL : CCTGGATCCACCGATGTGATTTGGGTGTAACGGCGTGGGAAAATAGGAAA
IRR : CCTGGATCCACCGACGTGCCCTCGGTGATGTCCTGATTCCGGTTCTGGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTCCTTAAA | CTTATTCACA | 0 |
DNA sequence
CCTGGATCCACCGATGTGATTTGGGTGTAACGGCGTGGGAAAATAGGAAATGCCCTCCTGAACAGGAAGAATCAAGCTTAGTTAGAGTCCTTCTTCCCCT
GCCAGAAAGGCACCTCACAGGTGCAATTATTACACACCCCCGCAGCCATATCCATTTCCTTCGACGACCCCAACCTCATCTCTACCGCAGGGCTGGTCCC
GACCATGGCCCTGGCCGAGGACCGGTTAACAGTACCAACCGACAAAGGTGCTAACCCAGGTGCCAAAATCACGACCCTCATTGCGGGGATGGTCGCCGGT
GCCGACTCCATCGACGATATCGATGCACTCCGCCACGGCGGTATGCACCGACTCTTTGACTGGATCTACGCCCCCTCCACGTTGGGGTCGTTCCTCCGGG
CCTTTACCTTCGGGCATGTCCGCCAACTCGACGCTGTGGCCTCCCGGTTCCTGGTGGGTCTGGCAACACAGGCCCCGGCCCTGGTCCCGGTTGATGCTTC
TACCAGTGATTACGTCTTCATCGATGTTGATGACACCATCATTAAGGTCCACGGACATCAGAAACAAGGCGCTGGTTTTGGTTACTCCGGTATCCGTGGA
CTCAACGCCCTGCTGGCCACAGTGACCACACCAGAGTCAGCACCAGTGGTCGTGGCCCAACGATTACGGAAAGGATCGTGCGGTTCCCCGCGGGGTGCAG
GCCGGTTGATTGCTGATGCGGTGGCTACCACCCGGCGTTTGCCGGGGATGGAGGATGAGAAGATCCTTCTACGCGCGGATTCTGCCTTTTATGGCCATCC
CAGTATCAGTGCTGCGATCAAGGCAGGGGCGGATGTGTCTGTCACGGTGCGGATGACCCCGAATGTCAAGAAAGCGATCGCCCAGGTCCCTGATGATGCG
TGGCAGACAATTAAGTACACCAACGCGATCTTCGACGAGGACACCGGGCGCTGGATCTCGGTGGCCGAGGTCGCCGAGATACCGTTCACCGCATTTACCT
CCCGGAAGAAAACCGACCACATCCCCGGACTGCTGGTGGTACGCCGGATACCGGAGCTGAATAACAAGGATGTGGATCAGCCGGGGTTGTTTGATCTACA
CCGCTTCCATGCGGTGTTCACCACCGCCGACCCAGGCATCCTCGATACTGTTGCTGCGGATAAAACCCACCGTCAACACGCAATCATCGAACAAGTCAAC
GCGGACGTAAAGGCCAGTGCGTTGGCGCATATGCCATCAGGTGTATTCACCGCCAACAGCGCCTGGTTGGTGTGTGCGGTCATGGCGTTCAACCTCACCC
GCACAGCCGGTGTGATCGCTGCAGGCGCGATGGCCAGGGCCACCACCGCAACGATCCGGCGGAAACTTGTGGCCGTTCCGGCCAGGATTGCACGCAGCGC
CCGGAGATTGATTCTTCACTTGCCACGGAACTGGCGGTGGGAAACCCAGTGGTCAAGATTGTGTGATCACGGCCGTTTACCACCGTAACCGGTAGCTCCC
TGACTACCTAAGCCGAGCTTTCGGCGTGAGATGACAACAATTCGTGGAACAACCAGACGACGACGTGATCTGGGGCTTACTCCTACCCGAAAACTCCAGA
CCCGCCCAGAACCGGAATCAGGACATCACCGAGGGCACGTCGGTGGATCCAGG
GCCAGAAAGGCACCTCACAGGTGCAATTATTACACACCCCCGCAGCCATATCCATTTCCTTCGACGACCCCAACCTCATCTCTACCGCAGGGCTGGTCCC
GACCATGGCCCTGGCCGAGGACCGGTTAACAGTACCAACCGACAAAGGTGCTAACCCAGGTGCCAAAATCACGACCCTCATTGCGGGGATGGTCGCCGGT
GCCGACTCCATCGACGATATCGATGCACTCCGCCACGGCGGTATGCACCGACTCTTTGACTGGATCTACGCCCCCTCCACGTTGGGGTCGTTCCTCCGGG
CCTTTACCTTCGGGCATGTCCGCCAACTCGACGCTGTGGCCTCCCGGTTCCTGGTGGGTCTGGCAACACAGGCCCCGGCCCTGGTCCCGGTTGATGCTTC
TACCAGTGATTACGTCTTCATCGATGTTGATGACACCATCATTAAGGTCCACGGACATCAGAAACAAGGCGCTGGTTTTGGTTACTCCGGTATCCGTGGA
CTCAACGCCCTGCTGGCCACAGTGACCACACCAGAGTCAGCACCAGTGGTCGTGGCCCAACGATTACGGAAAGGATCGTGCGGTTCCCCGCGGGGTGCAG
GCCGGTTGATTGCTGATGCGGTGGCTACCACCCGGCGTTTGCCGGGGATGGAGGATGAGAAGATCCTTCTACGCGCGGATTCTGCCTTTTATGGCCATCC
CAGTATCAGTGCTGCGATCAAGGCAGGGGCGGATGTGTCTGTCACGGTGCGGATGACCCCGAATGTCAAGAAAGCGATCGCCCAGGTCCCTGATGATGCG
TGGCAGACAATTAAGTACACCAACGCGATCTTCGACGAGGACACCGGGCGCTGGATCTCGGTGGCCGAGGTCGCCGAGATACCGTTCACCGCATTTACCT
CCCGGAAGAAAACCGACCACATCCCCGGACTGCTGGTGGTACGCCGGATACCGGAGCTGAATAACAAGGATGTGGATCAGCCGGGGTTGTTTGATCTACA
CCGCTTCCATGCGGTGTTCACCACCGCCGACCCAGGCATCCTCGATACTGTTGCTGCGGATAAAACCCACCGTCAACACGCAATCATCGAACAAGTCAAC
GCGGACGTAAAGGCCAGTGCGTTGGCGCATATGCCATCAGGTGTATTCACCGCCAACAGCGCCTGGTTGGTGTGTGCGGTCATGGCGTTCAACCTCACCC
GCACAGCCGGTGTGATCGCTGCAGGCGCGATGGCCAGGGCCACCACCGCAACGATCCGGCGGAAACTTGTGGCCGTTCCGGCCAGGATTGCACGCAGCGC
CCGGAGATTGATTCTTCACTTGCCACGGAACTGGCGGTGGGAAACCCAGTGGTCAAGATTGTGTGATCACGGCCGTTTACCACCGTAACCGGTAGCTCCC
TGACTACCTAAGCCGAGCTTTCGGCGTGAGATGACAACAATTCGTGGAACAACCAGACGACGACGTGATCTGGGGCTTACTCCTACCCGAAAACTCCAGA
CCCGCCCAGAACCGGAATCAGGACATCACCGAGGGCACGTCGGTGGATCCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1368 bp | 455 aa | 121 | 1488 | + | No |
Chemistry : DDE
ORF sequence :
MQLLHTPAAISISFDDPNLISTAGLVPTMALAEDRLTVPTDKGANPGAKITTLIAGMVAGADSIDDIDALRHGGMHRLFDWIYAPSTLGSFLRAFTFGHV
RQLDAVASRFLVGLATQAPALVPVDASTSDYVFIDVDDTIIKVHGHQKQGAGFGYSGIRGLNALLATVTTPESAPVVVAQRLRKGSCGSPRGAGRLIADA
VATTRRLPGMEDEKILLRADSAFYGHPSISAAIKAGADVSVTVRMTPNVKKAIAQVPDDAWQTIKYTNAIFDEDTGRWISVAEVAEIPFTAFTSRKKTDH
IPGLLVVRRIPELNNKDVDQPGLFDLHRFHAVFTTADPGILDTVAADKTHRQHAIIEQVNADVKASALAHMPSGVFTANSAWLVCAVMAFNLTRTAGVIA
AGAMARATTATIRRKLVAVPARIARSARRLILHLPRNWRWETQWSRLCDHGRLPP
RQLDAVASRFLVGLATQAPALVPVDASTSDYVFIDVDDTIIKVHGHQKQGAGFGYSGIRGLNALLATVTTPESAPVVVAQRLRKGSCGSPRGAGRLIADA
VATTRRLPGMEDEKILLRADSAFYGHPSISAAIKAGADVSVTVRMTPNVKKAIAQVPDDAWQTIKYTNAIFDEDTGRWISVAEVAEIPFTAFTSRKKTDH
IPGLLVVRRIPELNNKDVDQPGLFDLHRFHAVFTTADPGILDTVAADKTHRQHAIIEQVNADVKASALAHMPSGVFTANSAWLVCAVMAFNLTRTAGVIA
AGAMARATTATIRRKLVAVPARIARSARRLILHLPRNWRWETQWSRLCDHGRLPP
Blast result :
Comments
ISCgl4 is 86% aa similar to IS1677.
References
1] ISfinder annotation (2009)
2] Ikeda,M. and Nakagawa,S. (2002) Direct submission GenBank.
2] Ikeda,M. and Nakagawa,S. (2002) Direct submission GenBank.