ISCgl4

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003450 ND Corynebacterium glutamicum
Corynebacterium glutamicum ATCC 13032
DNA section
IS Length : 1653 bp

Ends


IR Length : 22/27

IRL : CCTGGATCCACCGATGTGATTTGGGTGTAACGGCGTGGGAAAATAGGAAA
IRR : CCTGGATCCACCGACGTGCCCTCGGTGATGTCCTGATTCCGGTTCTGGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCCTTAAACTTATTCACA0

DNA sequence

CCTGGATCCACCGATGTGATTTGGGTGTAACGGCGTGGGAAAATAGGAAATGCCCTCCTGAACAGGAAGAATCAAGCTTAGTTAGAGTCCTTCTTCCCCT
GCCAGAAAGGCACCTCACAGGTGCAATTATTACACACCCCCGCAGCCATATCCATTTCCTTCGACGACCCCAACCTCATCTCTACCGCAGGGCTGGTCCC
GACCATGGCCCTGGCCGAGGACCGGTTAACAGTACCAACCGACAAAGGTGCTAACCCAGGTGCCAAAATCACGACCCTCATTGCGGGGATGGTCGCCGGT
GCCGACTCCATCGACGATATCGATGCACTCCGCCACGGCGGTATGCACCGACTCTTTGACTGGATCTACGCCCCCTCCACGTTGGGGTCGTTCCTCCGGG
CCTTTACCTTCGGGCATGTCCGCCAACTCGACGCTGTGGCCTCCCGGTTCCTGGTGGGTCTGGCAACACAGGCCCCGGCCCTGGTCCCGGTTGATGCTTC
TACCAGTGATTACGTCTTCATCGATGTTGATGACACCATCATTAAGGTCCACGGACATCAGAAACAAGGCGCTGGTTTTGGTTACTCCGGTATCCGTGGA
CTCAACGCCCTGCTGGCCACAGTGACCACACCAGAGTCAGCACCAGTGGTCGTGGCCCAACGATTACGGAAAGGATCGTGCGGTTCCCCGCGGGGTGCAG
GCCGGTTGATTGCTGATGCGGTGGCTACCACCCGGCGTTTGCCGGGGATGGAGGATGAGAAGATCCTTCTACGCGCGGATTCTGCCTTTTATGGCCATCC
CAGTATCAGTGCTGCGATCAAGGCAGGGGCGGATGTGTCTGTCACGGTGCGGATGACCCCGAATGTCAAGAAAGCGATCGCCCAGGTCCCTGATGATGCG
TGGCAGACAATTAAGTACACCAACGCGATCTTCGACGAGGACACCGGGCGCTGGATCTCGGTGGCCGAGGTCGCCGAGATACCGTTCACCGCATTTACCT
CCCGGAAGAAAACCGACCACATCCCCGGACTGCTGGTGGTACGCCGGATACCGGAGCTGAATAACAAGGATGTGGATCAGCCGGGGTTGTTTGATCTACA
CCGCTTCCATGCGGTGTTCACCACCGCCGACCCAGGCATCCTCGATACTGTTGCTGCGGATAAAACCCACCGTCAACACGCAATCATCGAACAAGTCAAC
GCGGACGTAAAGGCCAGTGCGTTGGCGCATATGCCATCAGGTGTATTCACCGCCAACAGCGCCTGGTTGGTGTGTGCGGTCATGGCGTTCAACCTCACCC
GCACAGCCGGTGTGATCGCTGCAGGCGCGATGGCCAGGGCCACCACCGCAACGATCCGGCGGAAACTTGTGGCCGTTCCGGCCAGGATTGCACGCAGCGC
CCGGAGATTGATTCTTCACTTGCCACGGAACTGGCGGTGGGAAACCCAGTGGTCAAGATTGTGTGATCACGGCCGTTTACCACCGTAACCGGTAGCTCCC
TGACTACCTAAGCCGAGCTTTCGGCGTGAGATGACAACAATTCGTGGAACAACCAGACGACGACGTGATCTGGGGCTTACTCCTACCCGAAAACTCCAGA
CCCGCCCAGAACCGGAATCAGGACATCACCGAGGGCACGTCGGTGGATCCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1368 bp455 aa1211488+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQLLHTPAAISISFDDPNLISTAGLVPTMALAEDRLTVPTDKGANPGAKITTLIAGMVAGADSIDDIDALRHGGMHRLFDWIYAPSTLGSFLRAFTFGHV
RQLDAVASRFLVGLATQAPALVPVDASTSDYVFIDVDDTIIKVHGHQKQGAGFGYSGIRGLNALLATVTTPESAPVVVAQRLRKGSCGSPRGAGRLIADA
VATTRRLPGMEDEKILLRADSAFYGHPSISAAIKAGADVSVTVRMTPNVKKAIAQVPDDAWQTIKYTNAIFDEDTGRWISVAEVAEIPFTAFTSRKKTDH
IPGLLVVRRIPELNNKDVDQPGLFDLHRFHAVFTTADPGILDTVAADKTHRQHAIIEQVNADVKASALAHMPSGVFTANSAWLVCAVMAFNLTRTAGVIA
AGAMARATTATIRRKLVAVPARIARSARRLILHLPRNWRWETQWSRLCDHGRLPP

 

Blast result :
Comments
ISCgl4 is 86% aa similar to IS1677.
References
1] ISfinder annotation (2009)
2] Ikeda,M. and Nakagawa,S. (2002) Direct submission GenBank.