ISRssp9
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AATQ01000030 | ND | Roseovarius sp. | Roseovarius sp. HTCC2601 |
DNA section
IS Length : 1716 bp
Ends
IR Length : 14/15
IRL : CGCAACTCGCGATACTTGCGATTGGTTTAGACCCAGATTTCCCAAGTGAC
IRR : CGCAACTCGCGGGACGACCCTCTAACCGGTCTTTCCCAAGTTGGCTTCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGCGGGGGCG | TAGGATTCGC | 0 |
DNA sequence
CGCAACTCGCGATACTTGCGATTGGTTTAGACCCAGATTTCCCAAGTGACCTGAACATTCCGCTCTGTTGATGGCCGTATTTCTGTTATTCTCCAGTTAG
TTGGGCGGCATGAGGGCGACGTTTCATGGCTCACCTATCGGGTGCGGGGTCTCGGGACGATCTGAGGCTGGATTTCGACCGGCGGGTGCGGCTGGAGTTC
CGGGGATCGCAGCTCAGTTCGGATGGTGGCCTGCTGATCGTCCGGGAACTCGATGATGCGCTCGGACTGTCCGATCTGACGAGCGCAGCGCTGGTCGACA
ATCGAACGGGTGCTAACCGAGTTCACCAGTTGGCCGGGCTGTTCCGTCAAGCCGTCTATGGTCGCCTCGCCGGATACGAAGACGTCAACGACGCCGAGCG
GCTGGCCCATGACCCGGCGATGCGGCAGGTGGTCGGTCACCGCGCCATCGATGGGCAGGCCGCGTCAACGTCGCAGATGAGCCGGTTCGAGACCGAGGGG
CTGGCGACAGAGAGCAACCGCGCGGCGCTCGCCGATCTGAGCGGCCAGTGGATCGACCGCTCCCTCGACCGGGCGGGTCTGAAGTACATCGTGCTCGACA
TGGATAGTTCGGTCAGCCCGACCCACGGCGAGCAGGAGGGCACCGCGTGGAATGGCCATTTCGGCTGCGCCTGCTACCACCCGCTCTTCCTGTTCAACCA
GTTCGGGATGCTGGAACGCTGCTCCCTGCGCCCTGGAAACGTCCACAGCGCCGACGGCTGGAAGGCGGTTCTGGAGCCGGTGATGCAGCGCTACGCCGAC
CGCGACATGCTGAAGTTCTTCCGCGCGGACGCCGCATTCGCGCTGCCCGATCTGTACAAGACGCTGGAGGCAGCGGGGTACTTTTACGCGATCCGGCTGC
CCGCGAACGCCGTTCTGCAGGAGCATATAGCGCATCGGCTGAAGCGCCCGGTCGGACGGCCACCGAAGCACGCCCGACGGTTCTACGAGGACTTCGAGTA
TCAGGCGAAGAGCTGGGACAAGCCGCGCCGCGTGGTCGCGAAGATCGAGTGGCATCCGGGCGAGTTGTTCCCTCGCGTCGGTTTCGTGGTGACCAACCTG
CCGATGGACCCCGAGTGGATCAGCGGGTTCTACAACCGTCGCGGCACCGCCGAGCAGCACATCCGTGAGGGCAAGTACGCCATCCGCTGGACGCGCCTGT
CGTGCCGCCGGTTCCGGGATAACGAGGTGCGGCTCCAGCTGCACGCGCTGGCGTACAACCTCGCCGTCTTCCTCGCTCATGTCGGCCTGCCAGAGCCCAT
GTCGGCATGGTCGCTTACCAGCCTGCAGCTCAAGCTCATCAAGATCGGCGCGCGGGTTGTTCGGCATGCCCGCGCCATCATCTTTCAACTTGCCGAGGTC
GCGGTGACAGGGCCGATGGTACGCGCCGTCATTGCCGCAATCCAACGGCTGCGGGCGCCTCCAGCGGCGACATGCTGACTGCGCTGACCATCAAGATCGA
AGAAACCCGGCTCGACCATTGCGTCTGCGGCCTGCAGTCGATGGGCATCTGGCTGCCAATGGCGTCCGACAAGGGCCCCCGTCCGGGGCGTAGGCTGATC
ACCCACGGCGTCTCCGTTCGAAAAAAACGTTGTCAGGGCGTGGTGCATGCGGCACCATGGCCCTCAACGAAGCCAACTTGGGAAAGACCGGTTAGAGGGT
CGTCCCGCGAGTTGCG
TTGGGCGGCATGAGGGCGACGTTTCATGGCTCACCTATCGGGTGCGGGGTCTCGGGACGATCTGAGGCTGGATTTCGACCGGCGGGTGCGGCTGGAGTTC
CGGGGATCGCAGCTCAGTTCGGATGGTGGCCTGCTGATCGTCCGGGAACTCGATGATGCGCTCGGACTGTCCGATCTGACGAGCGCAGCGCTGGTCGACA
ATCGAACGGGTGCTAACCGAGTTCACCAGTTGGCCGGGCTGTTCCGTCAAGCCGTCTATGGTCGCCTCGCCGGATACGAAGACGTCAACGACGCCGAGCG
GCTGGCCCATGACCCGGCGATGCGGCAGGTGGTCGGTCACCGCGCCATCGATGGGCAGGCCGCGTCAACGTCGCAGATGAGCCGGTTCGAGACCGAGGGG
CTGGCGACAGAGAGCAACCGCGCGGCGCTCGCCGATCTGAGCGGCCAGTGGATCGACCGCTCCCTCGACCGGGCGGGTCTGAAGTACATCGTGCTCGACA
TGGATAGTTCGGTCAGCCCGACCCACGGCGAGCAGGAGGGCACCGCGTGGAATGGCCATTTCGGCTGCGCCTGCTACCACCCGCTCTTCCTGTTCAACCA
GTTCGGGATGCTGGAACGCTGCTCCCTGCGCCCTGGAAACGTCCACAGCGCCGACGGCTGGAAGGCGGTTCTGGAGCCGGTGATGCAGCGCTACGCCGAC
CGCGACATGCTGAAGTTCTTCCGCGCGGACGCCGCATTCGCGCTGCCCGATCTGTACAAGACGCTGGAGGCAGCGGGGTACTTTTACGCGATCCGGCTGC
CCGCGAACGCCGTTCTGCAGGAGCATATAGCGCATCGGCTGAAGCGCCCGGTCGGACGGCCACCGAAGCACGCCCGACGGTTCTACGAGGACTTCGAGTA
TCAGGCGAAGAGCTGGGACAAGCCGCGCCGCGTGGTCGCGAAGATCGAGTGGCATCCGGGCGAGTTGTTCCCTCGCGTCGGTTTCGTGGTGACCAACCTG
CCGATGGACCCCGAGTGGATCAGCGGGTTCTACAACCGTCGCGGCACCGCCGAGCAGCACATCCGTGAGGGCAAGTACGCCATCCGCTGGACGCGCCTGT
CGTGCCGCCGGTTCCGGGATAACGAGGTGCGGCTCCAGCTGCACGCGCTGGCGTACAACCTCGCCGTCTTCCTCGCTCATGTCGGCCTGCCAGAGCCCAT
GTCGGCATGGTCGCTTACCAGCCTGCAGCTCAAGCTCATCAAGATCGGCGCGCGGGTTGTTCGGCATGCCCGCGCCATCATCTTTCAACTTGCCGAGGTC
GCGGTGACAGGGCCGATGGTACGCGCCGTCATTGCCGCAATCCAACGGCTGCGGGCGCCTCCAGCGGCGACATGCTGACTGCGCTGACCATCAAGATCGA
AGAAACCCGGCTCGACCATTGCGTCTGCGGCCTGCAGTCGATGGGCATCTGGCTGCCAATGGCGTCCGACAAGGGCCCCCGTCCGGGGCGTAGGCTGATC
ACCCACGGCGTCTCCGTTCGAAAAAAACGTTGTCAGGGCGTGGTGCATGCGGCACCATGGCCCTCAACGAAGCCAACTTGGGAAAGACCGGTTAGAGGGT
CGTCCCGCGAGTTGCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 126 | 1478 | + | No |
Chemistry : DDE
ORF sequence :
MAHLSGAGSRDDLRLDFDRRVRLEFRGSQLSSDGGLLIVRELDDALGLSDLTSAALVDNRTGANRVHQLAGLFRQAVYGRLAGYEDVNDAERLAHDPAMR
QVVGHRAIDGQAASTSQMSRFETEGLATESNRAALADLSGQWIDRSLDRAGLKYIVLDMDSSVSPTHGEQEGTAWNGHFGCACYHPLFLFNQFGMLERCS
LRPGNVHSADGWKAVLEPVMQRYADRDMLKFFRADAAFALPDLYKTLEAAGYFYAIRLPANAVLQEHIAHRLKRPVGRPPKHARRFYEDFEYQAKSWDKP
RRVVAKIEWHPGELFPRVGFVVTNLPMDPEWISGFYNRRGTAEQHIREGKYAIRWTRLSCRRFRDNEVRLQLHALAYNLAVFLAHVGLPEPMSAWSLTSL
QLKLIKIGARVVRHARAIIFQLAEVAVTGPMVRAVIAAIQRLRAPPAATC
QVVGHRAIDGQAASTSQMSRFETEGLATESNRAALADLSGQWIDRSLDRAGLKYIVLDMDSSVSPTHGEQEGTAWNGHFGCACYHPLFLFNQFGMLERCS
LRPGNVHSADGWKAVLEPVMQRYADRDMLKFFRADAAFALPDLYKTLEAAGYFYAIRLPANAVLQEHIAHRLKRPVGRPPKHARRFYEDFEYQAKSWDKP
RRVVAKIEWHPGELFPRVGFVVTNLPMDPEWISGFYNRRGTAEQHIREGKYAIRWTRLSCRRFRDNEVRLQLHALAYNLAVFLAHVGLPEPMSAWSLTSL
QLKLIKIGARVVRHARAIIFQLAEVAVTGPMVRAVIAAIQRLRAPPAATC
Blast result :
Comments
ISRssp9 is 88% aa similar to ISPme1.
References
1] ISfinder annotation (2009)
2] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission.
2] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission.