ISTro1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY152823 | ND | Thiocapsa roseopersicina | Thiocapsa roseopersicina BBS |
DNA section
IS Length : 1735 bp
Ends
IR Length : 15/17
IRL : CCCGAATATTTCATAAAAAAGGGCGACTCTCGTTCAACCCATTGATAAAA
IRR : CCCGGATGTTTCATAAACCGACACAGCCGACACTGGCCTCGCGGATTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGGATGAAC | CTAG | AAGCGCCTTC | 4 |
DNA sequence
CCCGAATATTTCATAAAAAAGGGCGACTCTCGTTCAACCCATTGATAAAATGGCTGTTCCGCCAAGAACGCTTCGGAAGAAGCTAAACGAGGTCGCCCAT
GCCCGAGTCTACCCCGGAACAGCTGCGTTTTCCCCCGGTCGCCGGTTTCACGGTCCGCGGCGACTTCGACGGCGGCGCCATGTCGTCTGACTTTGGCCCC
ATGATTCTGCGCGGGGTTGATCGGCAGATCGGCCTGACCGAGCGGTTGAGCGCAGCGATCGATGATTGGCGCCATCCGTCCTACACCACCCATCCGATGC
GTGAGCTGATCGCGCAACGGGTCTACCAGATCGCCTGTGCTTACGAAGACGGCAACGACGCCAATGCGCTGCGCCGTGATGCGCTGTTCAAGCTGGGGCT
GGAGCGCAAGCCGCTGGATGCGACGACGGACCTGGCCAGCGGGCCGACCTTCTCGCGTTTGGAGAATGGGGTCGGCGCGCGCGACCTCTACCGCATGGCG
CAGGCCTTCGTCGAGGCCTTCATCGCCAGCTACCCGAAGGCGCCGCAGGTGATCGTGCTCGATATGGACCACTCCGAAGACGCCACCCATGGCCAGCAGG
AGTTCGCGTTCTACAATCATCACTACGGCAACCATTGCTACTTGCCGCTGTTTCTCTTCGAGGGCCTCTCGGGGAAGTTCATCACCGCGGTGCTGCGTCC
CGGCAAGCGCCCCACCGGCGCCGAGAACGCGATGATCCTCAAGCGCGTGCTCAAGCGGCTGCGGGCCGCGTGGCCACGCACACGCATCATCCTGCGCGGC
GACGGACACTTCTCCAACCCCGAGTTGATGGCCTTGGCGATGGCCGATCCGTTGACGGATTTCATCTTCGGCCTGGCGGGTAACCGGGCTCTCACGCCAC
GGGCCGAGCCGTTCTTGGCCGACGCCCGCAAGCTCCATGCGCTGCGCATCGAGAACGCCCGGCGCGCCGACGCCGACGTACCCGAGCGGACCCGCACCTA
CCACGAGGTTGACTACCGTGCCGGTTCCTGGCCCGGCGCGTGTCGGACCATCCTCAAAGTCGAGGTGACGGCGCGCGGCGACAACCTCCGCTTCGTCGTC
ACCTCCTTGGACTTGCCCAGTCCCGAGTGCGTCTACCGCGATCTGTACTGCGCGCGCGGCCAGGACGAGAACTTCATCAAAATGATCAAGAACGATCTGG
CCAGCGATCGCACTTCCGACAGCACCTTCTTGGCCAATCAGATGCGCTTGTTCTTCTCCTGCGCCGCTTACGTCTTGCACCAAACGCTGCGCACCGAGGT
CCTCGTCGGCACGGAACTGGCCAACGCCCAGCCTGCCACCGTGATCATCAAACTGTTCAAGCTCGCCGTGCGCGTGGTGCAGTACAAAGACCGCGTGCGC
CTGCACCTGCCCTCGAGCTGTCCGGTCAAGACGCTGTTGCAGCAGGTCACCGAGAGGCTCTTCAACGCGCAGCCCCGGGCGGCGCCCGCCTAGACGCACA
TACATCCCCGCACGGGGATTTCAGCACGCGCACGACGACTATGCCCACCTCGGGCAGGGCATCGTACGCCTGCGCGGCGACAAAACTACTCGTGCCCCGT
TGATCAAGCCCGTTGCCGCTCGGTATTTCCACCATTCAACCCCCGCGGCGTCCCGGTCATCGCCCTCGGTGACGCCCAGCGCCGCGCAAATCCGCGAGGC
CAGTGTCGGCTGTGTCGGTTTATGAAACATCCGGG
GCCCGAGTCTACCCCGGAACAGCTGCGTTTTCCCCCGGTCGCCGGTTTCACGGTCCGCGGCGACTTCGACGGCGGCGCCATGTCGTCTGACTTTGGCCCC
ATGATTCTGCGCGGGGTTGATCGGCAGATCGGCCTGACCGAGCGGTTGAGCGCAGCGATCGATGATTGGCGCCATCCGTCCTACACCACCCATCCGATGC
GTGAGCTGATCGCGCAACGGGTCTACCAGATCGCCTGTGCTTACGAAGACGGCAACGACGCCAATGCGCTGCGCCGTGATGCGCTGTTCAAGCTGGGGCT
GGAGCGCAAGCCGCTGGATGCGACGACGGACCTGGCCAGCGGGCCGACCTTCTCGCGTTTGGAGAATGGGGTCGGCGCGCGCGACCTCTACCGCATGGCG
CAGGCCTTCGTCGAGGCCTTCATCGCCAGCTACCCGAAGGCGCCGCAGGTGATCGTGCTCGATATGGACCACTCCGAAGACGCCACCCATGGCCAGCAGG
AGTTCGCGTTCTACAATCATCACTACGGCAACCATTGCTACTTGCCGCTGTTTCTCTTCGAGGGCCTCTCGGGGAAGTTCATCACCGCGGTGCTGCGTCC
CGGCAAGCGCCCCACCGGCGCCGAGAACGCGATGATCCTCAAGCGCGTGCTCAAGCGGCTGCGGGCCGCGTGGCCACGCACACGCATCATCCTGCGCGGC
GACGGACACTTCTCCAACCCCGAGTTGATGGCCTTGGCGATGGCCGATCCGTTGACGGATTTCATCTTCGGCCTGGCGGGTAACCGGGCTCTCACGCCAC
GGGCCGAGCCGTTCTTGGCCGACGCCCGCAAGCTCCATGCGCTGCGCATCGAGAACGCCCGGCGCGCCGACGCCGACGTACCCGAGCGGACCCGCACCTA
CCACGAGGTTGACTACCGTGCCGGTTCCTGGCCCGGCGCGTGTCGGACCATCCTCAAAGTCGAGGTGACGGCGCGCGGCGACAACCTCCGCTTCGTCGTC
ACCTCCTTGGACTTGCCCAGTCCCGAGTGCGTCTACCGCGATCTGTACTGCGCGCGCGGCCAGGACGAGAACTTCATCAAAATGATCAAGAACGATCTGG
CCAGCGATCGCACTTCCGACAGCACCTTCTTGGCCAATCAGATGCGCTTGTTCTTCTCCTGCGCCGCTTACGTCTTGCACCAAACGCTGCGCACCGAGGT
CCTCGTCGGCACGGAACTGGCCAACGCCCAGCCTGCCACCGTGATCATCAAACTGTTCAAGCTCGCCGTGCGCGTGGTGCAGTACAAAGACCGCGTGCGC
CTGCACCTGCCCTCGAGCTGTCCGGTCAAGACGCTGTTGCAGCAGGTCACCGAGAGGCTCTTCAACGCGCAGCCCCGGGCGGCGCCCGCCTAGACGCACA
TACATCCCCGCACGGGGATTTCAGCACGCGCACGACGACTATGCCCACCTCGGGCAGGGCATCGTACGCCTGCGCGGCGACAAAACTACTCGTGCCCCGT
TGATCAAGCCCGTTGCCGCTCGGTATTTCCACCATTCAACCCCCGCGGCGTCCCGGTCATCGCCCTCGGTGACGCCCAGCGCCGCGCAAATCCGCGAGGC
CAGTGTCGGCTGTGTCGGTTTATGAAACATCCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1395 bp | 464 aa | 99 | 1493 | + | No |
Chemistry : DDE
ORF sequence :
MPESTPEQLRFPPVAGFTVRGDFDGGAMSSDFGPMILRGVDRQIGLTERLSAAIDDWRHPSYTTHPMRELIAQRVYQIACAYEDGNDANALRRDALFKLG
LERKPLDATTDLASGPTFSRLENGVGARDLYRMAQAFVEAFIASYPKAPQVIVLDMDHSEDATHGQQEFAFYNHHYGNHCYLPLFLFEGLSGKFITAVLR
PGKRPTGAENAMILKRVLKRLRAAWPRTRIILRGDGHFSNPELMALAMADPLTDFIFGLAGNRALTPRAEPFLADARKLHALRIENARRADADVPERTRT
YHEVDYRAGSWPGACRTILKVEVTARGDNLRFVVTSLDLPSPECVYRDLYCARGQDENFIKMIKNDLASDRTSDSTFLANQMRLFFSCAAYVLHQTLRTE
VLVGTELANAQPATVIIKLFKLAVRVVQYKDRVRLHLPSSCPVKTLLQQVTERLFNAQPRAAPA
LERKPLDATTDLASGPTFSRLENGVGARDLYRMAQAFVEAFIASYPKAPQVIVLDMDHSEDATHGQQEFAFYNHHYGNHCYLPLFLFEGLSGKFITAVLR
PGKRPTGAENAMILKRVLKRLRAAWPRTRIILRGDGHFSNPELMALAMADPLTDFIFGLAGNRALTPRAEPFLADARKLHALRIENARRADADVPERTRT
YHEVDYRAGSWPGACRTILKVEVTARGDNLRFVVTSLDLPSPECVYRDLYCARGQDENFIKMIKNDLASDRTSDSTFLANQMRLFFSCAAYVLHQTLRTE
VLVGTELANAQPATVIIKLFKLAVRVVQYKDRVRLHLPSSCPVKTLLQQVTERLFNAQPRAAPA
Blast result :
Comments
ISTro1 is 68% aa similar to ISCARN98.
References
1] ISfinder annotation (2009)
2] Maroti,G., Fodor,B.D., Rakhely,G., Kovacs,A.T., Arvani,S. and Kovacs,K.L. (2003) Eur. J. Biochem. 270 (10), 2218-2227
2] Maroti,G., Fodor,B.D., Rakhely,G., Kovacs,A.T., Arvani,S. and Kovacs,K.L. (2003) Eur. J. Biochem. 270 (10), 2218-2227