ISTro1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY152823 ND Thiocapsa roseopersicina
Thiocapsa roseopersicina BBS
DNA section
IS Length : 1735 bp

Ends


IR Length : 15/17

IRL : CCCGAATATTTCATAAAAAAGGGCGACTCTCGTTCAACCCATTGATAAAA
IRR : CCCGGATGTTTCATAAACCGACACAGCCGACACTGGCCTCGCGGATTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGGGATGAACCTAGAAGCGCCTTC4

DNA sequence

CCCGAATATTTCATAAAAAAGGGCGACTCTCGTTCAACCCATTGATAAAATGGCTGTTCCGCCAAGAACGCTTCGGAAGAAGCTAAACGAGGTCGCCCAT
GCCCGAGTCTACCCCGGAACAGCTGCGTTTTCCCCCGGTCGCCGGTTTCACGGTCCGCGGCGACTTCGACGGCGGCGCCATGTCGTCTGACTTTGGCCCC
ATGATTCTGCGCGGGGTTGATCGGCAGATCGGCCTGACCGAGCGGTTGAGCGCAGCGATCGATGATTGGCGCCATCCGTCCTACACCACCCATCCGATGC
GTGAGCTGATCGCGCAACGGGTCTACCAGATCGCCTGTGCTTACGAAGACGGCAACGACGCCAATGCGCTGCGCCGTGATGCGCTGTTCAAGCTGGGGCT
GGAGCGCAAGCCGCTGGATGCGACGACGGACCTGGCCAGCGGGCCGACCTTCTCGCGTTTGGAGAATGGGGTCGGCGCGCGCGACCTCTACCGCATGGCG
CAGGCCTTCGTCGAGGCCTTCATCGCCAGCTACCCGAAGGCGCCGCAGGTGATCGTGCTCGATATGGACCACTCCGAAGACGCCACCCATGGCCAGCAGG
AGTTCGCGTTCTACAATCATCACTACGGCAACCATTGCTACTTGCCGCTGTTTCTCTTCGAGGGCCTCTCGGGGAAGTTCATCACCGCGGTGCTGCGTCC
CGGCAAGCGCCCCACCGGCGCCGAGAACGCGATGATCCTCAAGCGCGTGCTCAAGCGGCTGCGGGCCGCGTGGCCACGCACACGCATCATCCTGCGCGGC
GACGGACACTTCTCCAACCCCGAGTTGATGGCCTTGGCGATGGCCGATCCGTTGACGGATTTCATCTTCGGCCTGGCGGGTAACCGGGCTCTCACGCCAC
GGGCCGAGCCGTTCTTGGCCGACGCCCGCAAGCTCCATGCGCTGCGCATCGAGAACGCCCGGCGCGCCGACGCCGACGTACCCGAGCGGACCCGCACCTA
CCACGAGGTTGACTACCGTGCCGGTTCCTGGCCCGGCGCGTGTCGGACCATCCTCAAAGTCGAGGTGACGGCGCGCGGCGACAACCTCCGCTTCGTCGTC
ACCTCCTTGGACTTGCCCAGTCCCGAGTGCGTCTACCGCGATCTGTACTGCGCGCGCGGCCAGGACGAGAACTTCATCAAAATGATCAAGAACGATCTGG
CCAGCGATCGCACTTCCGACAGCACCTTCTTGGCCAATCAGATGCGCTTGTTCTTCTCCTGCGCCGCTTACGTCTTGCACCAAACGCTGCGCACCGAGGT
CCTCGTCGGCACGGAACTGGCCAACGCCCAGCCTGCCACCGTGATCATCAAACTGTTCAAGCTCGCCGTGCGCGTGGTGCAGTACAAAGACCGCGTGCGC
CTGCACCTGCCCTCGAGCTGTCCGGTCAAGACGCTGTTGCAGCAGGTCACCGAGAGGCTCTTCAACGCGCAGCCCCGGGCGGCGCCCGCCTAGACGCACA
TACATCCCCGCACGGGGATTTCAGCACGCGCACGACGACTATGCCCACCTCGGGCAGGGCATCGTACGCCTGCGCGGCGACAAAACTACTCGTGCCCCGT
TGATCAAGCCCGTTGCCGCTCGGTATTTCCACCATTCAACCCCCGCGGCGTCCCGGTCATCGCCCTCGGTGACGCCCAGCGCCGCGCAAATCCGCGAGGC
CAGTGTCGGCTGTGTCGGTTTATGAAACATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1395 bp464 aa991493+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPESTPEQLRFPPVAGFTVRGDFDGGAMSSDFGPMILRGVDRQIGLTERLSAAIDDWRHPSYTTHPMRELIAQRVYQIACAYEDGNDANALRRDALFKLG
LERKPLDATTDLASGPTFSRLENGVGARDLYRMAQAFVEAFIASYPKAPQVIVLDMDHSEDATHGQQEFAFYNHHYGNHCYLPLFLFEGLSGKFITAVLR
PGKRPTGAENAMILKRVLKRLRAAWPRTRIILRGDGHFSNPELMALAMADPLTDFIFGLAGNRALTPRAEPFLADARKLHALRIENARRADADVPERTRT
YHEVDYRAGSWPGACRTILKVEVTARGDNLRFVVTSLDLPSPECVYRDLYCARGQDENFIKMIKNDLASDRTSDSTFLANQMRLFFSCAAYVLHQTLRTE
VLVGTELANAQPATVIIKLFKLAVRVVQYKDRVRLHLPSSCPVKTLLQQVTERLFNAQPRAAPA

 

Blast result :
Comments
ISTro1 is 68% aa similar to ISCARN98.
References
1] ISfinder annotation (2009)
2] Maroti,G., Fodor,B.D., Rakhely,G., Kovacs,A.T., Arvani,S. and Kovacs,K.L. (2003) Eur. J. Biochem. 270 (10), 2218-2227