ISUnCu12

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU016659 ND Uncultured marine
Uncultured marine microorganism HF4000_APKG8L7
DNA section
IS Length : 1597 bp

Ends


IR Length : 14/15

IRL : CCCGGATTATTCACGGTTCGGCGTGAAGAGGCTGGTGAGCATGGATTAAC
IRR : CCCGGATTATTCATGAGGGGCAGGTATTTTGGGCGAGGCAAGCGCCATCG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGTTCGGCTCTAGCTTCACGTCC4

DNA sequence

CCCGGATTATTCACGGTTCGGCGTGAAGAGGCTGGTGAGCATGGATTAACCTATTGAGATGCCGTATGATTTCGGTGTTTGGACAAGATCATGCGGCACC
AGGAGAACCCAGCTCACCATGACCGAGACTATCGCCTACCTGCCCGGTCTGTCACCCGTCGAGAACAAGGAGCTGTGCGCCCGGTTCGACGGCGGCCGGC
TGTCGTCCGACGGGGGCGTTCTGGTGCTGCGCGGGATCGAGACGCGTCTCGGGATCGCCGATCGCCTTGCCTCCTGCCTGGCCGACGCGCGCGATCCGGC
GAGCACGATACATTCCTACGCCGACATGATCCGGGCACGGCTGTTCGCCATCGCCTGTGGCTACGAGGATTGCGACGACCTCGATTCCTTGCGCGTCGAT
CCGGCGTTCAAGCTGGCCTGTGGCCGCCTGCCCGAGAGCGGTCGCGATCTGATGAGCCAGCCAACCCTGTCGCGCCTCGAGAACGCGCCGTCGTGGCGCG
CGCTCGCGCGCATGGGGCTGTCGATGATCGATCTGTTCCTCGGAAGCTTCGAGCGTGGTCCCCAGCGCATCACCCTCGATATCGACGATACCCTCGATGC
CGTCCACGGCGGCCAGCAGCTGGCCCTGTTCAACGCCCACTACGACGAGTACTGCTTCCAGCCCATCCACATCTTCGACGCGGCAACCGGCAAGCCGGTG
CTGTCGCTGCTGCGTCCCGGCAAGCGGCCCTCGGGAGAAGAGGCGGCGCGTATCCTCGGGCACGTCATCCGCCGCATCCGGCGCCACTGGCCCCGGGTCG
AGATCACCGTGCGCGGGGACGGTCATTACGGCACCCCCGAGGTCATGGACCTGCTCGAAGACCAGGGTTGCGGCTACATCTTCGGCCTCCCCGGCAACGC
CCGGCTGGCACGGATCGGCCAGCCCTGGTGCGAGGACGCGGCGGTGCGCCGGGTGCGCTCGCGCAAGGACAAGGTGCGCCGCTTCTTCCGCATCGGCTAC
CGGGCCGGAAGCTGGTCGCGGATGCGCACCGTCATCGCCCGCGTCGAGGCCACATCGAAGGGCTGCGACATCCGCTTCATCGTCACCAACCTGCCCGGCC
GCGCCAAGGTGCTCTACGAGAAGGTCTATTGCGCCCGCGGGCGGATGGAAAACATGATCAAGGAGCACAAGCTCTACACCAAGTCCGACCGCACCTCGTG
CCACCGCTGGGAAGCCAACCAGTTCCGATTGTTCCTGCACAGCGGCGCCTATTGGCTGCTGCATCAGCTGCGCCAGGCCGCGCCCCGGCGCTCGCTCTGG
CGCACGGCGACGTTCGAAACCATTCGCCGCGCCTTCCTCAAGATCGCCGTGCGCATCCAGGAGCTCAAGTCCCGCGTGCGCGTCGCCCTGCCATCGGCCT
ATCCATATCGGCCAGCCCTCGTCTCCATGGCCGGCTGCATCGCCGCCCAAGGCCCCTGAGCCAAGCGGCAAGTGCCGCCATATGAACCCCGAGCTTCAAC
CCCAAGCCGCCTTCAAAATCCGTCAAGAAAACAGCCGTCAACCCGGACGATGGCGCTTGCCTCGCCCAAAATACCTGCCCCTCATGAATAATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa591459+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPYDFGVWTRSCGTRRTQLTMTETIAYLPGLSPVENKELCARFDGGRLSSDGGVLVLRGIETRLGIADRLASCLADARDPASTIHSYADMIRARLFAIAC
GYEDCDDLDSLRVDPAFKLACGRLPESGRDLMSQPTLSRLENAPSWRALARMGLSMIDLFLGSFERGPQRITLDIDDTLDAVHGGQQLALFNAHYDEYCF
QPIHIFDAATGKPVLSLLRPGKRPSGEEAARILGHVIRRIRRHWPRVEITVRGDGHYGTPEVMDLLEDQGCGYIFGLPGNARLARIGQPWCEDAAVRRVR
SRKDKVRRFFRIGYRAGSWSRMRTVIARVEATSKGCDIRFIVTNLPGRAKVLYEKVYCARGRMENMIKEHKLYTKSDRTSCHRWEANQFRLFLHSGAYWL
LHQLRQAAPRRSLWRTATFETIRRAFLKIAVRIQELKSRVRVALPSAYPYRPALVSMAGCIAAQGP

 

Blast result :
Comments
ISUnCu12 is 66% aa similar to ISMpo3.
References
1] ISfinder annotation (2009)
2] Konstantinidis,K.T. and Delong,E.F. (2008) ISME J 2 (10), 1052-1065.