ISUnCu12
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU016659 | ND | Uncultured marine | Uncultured marine microorganism HF4000_APKG8L7 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 14/15
IRL : CCCGGATTATTCACGGTTCGGCGTGAAGAGGCTGGTGAGCATGGATTAAC
IRR : CCCGGATTATTCATGAGGGGCAGGTATTTTGGGCGAGGCAAGCGCCATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGTTCGGCT | CTAG | CTTCACGTCC | 4 |
DNA sequence
CCCGGATTATTCACGGTTCGGCGTGAAGAGGCTGGTGAGCATGGATTAACCTATTGAGATGCCGTATGATTTCGGTGTTTGGACAAGATCATGCGGCACC
AGGAGAACCCAGCTCACCATGACCGAGACTATCGCCTACCTGCCCGGTCTGTCACCCGTCGAGAACAAGGAGCTGTGCGCCCGGTTCGACGGCGGCCGGC
TGTCGTCCGACGGGGGCGTTCTGGTGCTGCGCGGGATCGAGACGCGTCTCGGGATCGCCGATCGCCTTGCCTCCTGCCTGGCCGACGCGCGCGATCCGGC
GAGCACGATACATTCCTACGCCGACATGATCCGGGCACGGCTGTTCGCCATCGCCTGTGGCTACGAGGATTGCGACGACCTCGATTCCTTGCGCGTCGAT
CCGGCGTTCAAGCTGGCCTGTGGCCGCCTGCCCGAGAGCGGTCGCGATCTGATGAGCCAGCCAACCCTGTCGCGCCTCGAGAACGCGCCGTCGTGGCGCG
CGCTCGCGCGCATGGGGCTGTCGATGATCGATCTGTTCCTCGGAAGCTTCGAGCGTGGTCCCCAGCGCATCACCCTCGATATCGACGATACCCTCGATGC
CGTCCACGGCGGCCAGCAGCTGGCCCTGTTCAACGCCCACTACGACGAGTACTGCTTCCAGCCCATCCACATCTTCGACGCGGCAACCGGCAAGCCGGTG
CTGTCGCTGCTGCGTCCCGGCAAGCGGCCCTCGGGAGAAGAGGCGGCGCGTATCCTCGGGCACGTCATCCGCCGCATCCGGCGCCACTGGCCCCGGGTCG
AGATCACCGTGCGCGGGGACGGTCATTACGGCACCCCCGAGGTCATGGACCTGCTCGAAGACCAGGGTTGCGGCTACATCTTCGGCCTCCCCGGCAACGC
CCGGCTGGCACGGATCGGCCAGCCCTGGTGCGAGGACGCGGCGGTGCGCCGGGTGCGCTCGCGCAAGGACAAGGTGCGCCGCTTCTTCCGCATCGGCTAC
CGGGCCGGAAGCTGGTCGCGGATGCGCACCGTCATCGCCCGCGTCGAGGCCACATCGAAGGGCTGCGACATCCGCTTCATCGTCACCAACCTGCCCGGCC
GCGCCAAGGTGCTCTACGAGAAGGTCTATTGCGCCCGCGGGCGGATGGAAAACATGATCAAGGAGCACAAGCTCTACACCAAGTCCGACCGCACCTCGTG
CCACCGCTGGGAAGCCAACCAGTTCCGATTGTTCCTGCACAGCGGCGCCTATTGGCTGCTGCATCAGCTGCGCCAGGCCGCGCCCCGGCGCTCGCTCTGG
CGCACGGCGACGTTCGAAACCATTCGCCGCGCCTTCCTCAAGATCGCCGTGCGCATCCAGGAGCTCAAGTCCCGCGTGCGCGTCGCCCTGCCATCGGCCT
ATCCATATCGGCCAGCCCTCGTCTCCATGGCCGGCTGCATCGCCGCCCAAGGCCCCTGAGCCAAGCGGCAAGTGCCGCCATATGAACCCCGAGCTTCAAC
CCCAAGCCGCCTTCAAAATCCGTCAAGAAAACAGCCGTCAACCCGGACGATGGCGCTTGCCTCGCCCAAAATACCTGCCCCTCATGAATAATCCGGG
AGGAGAACCCAGCTCACCATGACCGAGACTATCGCCTACCTGCCCGGTCTGTCACCCGTCGAGAACAAGGAGCTGTGCGCCCGGTTCGACGGCGGCCGGC
TGTCGTCCGACGGGGGCGTTCTGGTGCTGCGCGGGATCGAGACGCGTCTCGGGATCGCCGATCGCCTTGCCTCCTGCCTGGCCGACGCGCGCGATCCGGC
GAGCACGATACATTCCTACGCCGACATGATCCGGGCACGGCTGTTCGCCATCGCCTGTGGCTACGAGGATTGCGACGACCTCGATTCCTTGCGCGTCGAT
CCGGCGTTCAAGCTGGCCTGTGGCCGCCTGCCCGAGAGCGGTCGCGATCTGATGAGCCAGCCAACCCTGTCGCGCCTCGAGAACGCGCCGTCGTGGCGCG
CGCTCGCGCGCATGGGGCTGTCGATGATCGATCTGTTCCTCGGAAGCTTCGAGCGTGGTCCCCAGCGCATCACCCTCGATATCGACGATACCCTCGATGC
CGTCCACGGCGGCCAGCAGCTGGCCCTGTTCAACGCCCACTACGACGAGTACTGCTTCCAGCCCATCCACATCTTCGACGCGGCAACCGGCAAGCCGGTG
CTGTCGCTGCTGCGTCCCGGCAAGCGGCCCTCGGGAGAAGAGGCGGCGCGTATCCTCGGGCACGTCATCCGCCGCATCCGGCGCCACTGGCCCCGGGTCG
AGATCACCGTGCGCGGGGACGGTCATTACGGCACCCCCGAGGTCATGGACCTGCTCGAAGACCAGGGTTGCGGCTACATCTTCGGCCTCCCCGGCAACGC
CCGGCTGGCACGGATCGGCCAGCCCTGGTGCGAGGACGCGGCGGTGCGCCGGGTGCGCTCGCGCAAGGACAAGGTGCGCCGCTTCTTCCGCATCGGCTAC
CGGGCCGGAAGCTGGTCGCGGATGCGCACCGTCATCGCCCGCGTCGAGGCCACATCGAAGGGCTGCGACATCCGCTTCATCGTCACCAACCTGCCCGGCC
GCGCCAAGGTGCTCTACGAGAAGGTCTATTGCGCCCGCGGGCGGATGGAAAACATGATCAAGGAGCACAAGCTCTACACCAAGTCCGACCGCACCTCGTG
CCACCGCTGGGAAGCCAACCAGTTCCGATTGTTCCTGCACAGCGGCGCCTATTGGCTGCTGCATCAGCTGCGCCAGGCCGCGCCCCGGCGCTCGCTCTGG
CGCACGGCGACGTTCGAAACCATTCGCCGCGCCTTCCTCAAGATCGCCGTGCGCATCCAGGAGCTCAAGTCCCGCGTGCGCGTCGCCCTGCCATCGGCCT
ATCCATATCGGCCAGCCCTCGTCTCCATGGCCGGCTGCATCGCCGCCCAAGGCCCCTGAGCCAAGCGGCAAGTGCCGCCATATGAACCCCGAGCTTCAAC
CCCAAGCCGCCTTCAAAATCCGTCAAGAAAACAGCCGTCAACCCGGACGATGGCGCTTGCCTCGCCCAAAATACCTGCCCCTCATGAATAATCCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 59 | 1459 | + | No |
Chemistry : DDE
ORF sequence :
MPYDFGVWTRSCGTRRTQLTMTETIAYLPGLSPVENKELCARFDGGRLSSDGGVLVLRGIETRLGIADRLASCLADARDPASTIHSYADMIRARLFAIAC
GYEDCDDLDSLRVDPAFKLACGRLPESGRDLMSQPTLSRLENAPSWRALARMGLSMIDLFLGSFERGPQRITLDIDDTLDAVHGGQQLALFNAHYDEYCF
QPIHIFDAATGKPVLSLLRPGKRPSGEEAARILGHVIRRIRRHWPRVEITVRGDGHYGTPEVMDLLEDQGCGYIFGLPGNARLARIGQPWCEDAAVRRVR
SRKDKVRRFFRIGYRAGSWSRMRTVIARVEATSKGCDIRFIVTNLPGRAKVLYEKVYCARGRMENMIKEHKLYTKSDRTSCHRWEANQFRLFLHSGAYWL
LHQLRQAAPRRSLWRTATFETIRRAFLKIAVRIQELKSRVRVALPSAYPYRPALVSMAGCIAAQGP
GYEDCDDLDSLRVDPAFKLACGRLPESGRDLMSQPTLSRLENAPSWRALARMGLSMIDLFLGSFERGPQRITLDIDDTLDAVHGGQQLALFNAHYDEYCF
QPIHIFDAATGKPVLSLLRPGKRPSGEEAARILGHVIRRIRRHWPRVEITVRGDGHYGTPEVMDLLEDQGCGYIFGLPGNARLARIGQPWCEDAAVRRVR
SRKDKVRRFFRIGYRAGSWSRMRTVIARVEATSKGCDIRFIVTNLPGRAKVLYEKVYCARGRMENMIKEHKLYTKSDRTSCHRWEANQFRLFLHSGAYWL
LHQLRQAAPRRSLWRTATFETIRRAFLKIAVRIQELKSRVRVALPSAYPYRPALVSMAGCIAAQGP
Blast result :
Comments
ISUnCu12 is 66% aa similar to ISMpo3.
References
1] ISfinder annotation (2009)
2] Konstantinidis,K.T. and Delong,E.F. (2008) ISME J 2 (10), 1052-1065.
2] Konstantinidis,K.T. and Delong,E.F. (2008) ISME J 2 (10), 1052-1065.