ISCph6
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008639 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides DSM 266 |
DNA section
IS Length : 1778 bp
Ends
IR Length : 16/17
IRL : CCTGAATAATTCACGAGGGCAATAAAAAAGGGATGCATAATCGCCACAAA
IRR : CCTGAATAATTCATGAGACTGCAAAAGAGAGGCATCTCGAGCCAAAAATG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGCCGGCAGG | ATAG | GTGGTATCAT | 4 |
| AACAGATGAA | TTAG | GTCGTGAAGT | 4 |
| AATAACCCAT | ATAA | GACCACAACG | 4 |
| CTGCGTGAAT | TTAA | ACTCATGCTG | 4 |
| TAATAAGATC | ATAA | TAGCGTATTT | 4 |
DNA sequence
CCTGAATAATTCACGAGGGCAATAAAAAAGGGATGCATAATCGCCACAAAGTGTTATTTTATTGGTGCTTAGACAACAAATAACCACTGGACGGCTATGC
AACTCCCTTACACCAATATACACACTGACCAACCCAACCAACAAGCGCTATTTCCTGATTGTTTCGAAGTATCCGTTGCCCCTGTCAAGGGCAAAAAAGT
GGTTCTTGATTTCCAGGGAGGCAACGCCACCAGCGATGCCGGTGTCCTGCTGTTGAAGGAAGTCGAGTCCATGACCAGGATCGTTCCGAAGCTTGCCGAT
TGCATTGCTGATTCCCGTCGGACCTCATCTGTCATGCATTCGATCCCTGACCTGATCGCCCAGCGGGTCTACCAGATCGCCTGCGGCTATGAGGACGGCA
ACGACAGCAATTCCATGCGGAAGGATCCCGCTCTCAAGATGGCCCTCAACCGTCTTCCTGAAAGCGGCGATGACCTTGCCAGCCAGCCTACCTTCAGCAG
GCTGGAGAACATGGTTACCCGTCCGGAGCTCTATCGTATGGCTGTCGGGTTCCTCGATCATTTCCTTGACTCCTACACCGAGGCACCGCGGGTCATCGTC
CTGGACTTTGACGATACCGAGGATGTTGTTCATGGCAAACAGCAGCTGGCGCTTTTCAACGGCTATCACCAGGAGACCTGTTACCAGCCTCTCCATGTTT
TCGAGGGGTTGACTGGCAAGCTGATCGCCTCGATCCTTCGCCCCGGCAGGCGTCCTACCGGCAAGGAGATTGTATCATACGTGAAGCGCATTGTCCGCCA
TATCCGGAGCAGGTGGCCGGAAACAATCATCGTCTACCGCGGCGACAGCCATTACGGTGTGCCGGAAGTCTACTCCTTCCTTGCCAGAGAGCAGAACTGC
TACAGCGTGACCGGCCTCGGCGGTAATGACGTGCTGCTTCGCTCCGTCAAGGACATTATTGAGGAGGTCAAGAAGCATGGAGCCGGATACCGCCGTTACC
ATACCTTTCAGTATCAGGCACGGAGCTGGAAGGAGACCCGCAGAGTGGTCGCCAAGGTCGAGATGACCGAAAAGGGGCTGAACGTGCGCTTCATCAGCAC
CGACATGCAGGAGGCAAAGGCCAAGACTCTGTACGAGCAGATTTACAGTGCACGTGGCAACGATGAACTCTACATCAAGGCGCATAAAACGTTCATGAAA
AGCGACCGGACCTCATGCCATCGCTTTCTTGCCAACCAGTTCAGGGTCTTCCTGCATTCGGCGGCCTATGTCCTGGTCCACGCCTTCCAGACCAACCTGC
TCCGGGGCACCGCCCTTGCCACGGCGACCTTCGAGACAATCCGATTGAAGCTCCTGAAAATCGGAGCGAAGGTCATTGAGATGAAGACACGCATCAAGGT
GCATCTGCCGACCTCATATCCGTACAAACCGATACTGAACAAGTGCTTCGCCGTCCTTGAGCACCTGCGATCAGTCCCATGGCCATCAACAGCAATTCCG
TAATGCTGTATCGTTTCCAGAAGGGGAAGGTAACAATCAAACAGAGCTACAGGAAGGGCGTAAAAGTCATGACGTCAAGGCAAGACTATGGCCTCATGGT
ATCTGAGGCCATAGTCTTACGGGGATAAGCCGCTTTTCCGGCATCAGTAAATTTCCGATAAGGGGTGAACGTATGACGCGAAGACAAGACAGGTCGGCAT
CTCAGGTTGGCTTCGCCTATGGCAGGCTCATTTTTGGCTCGAGATGCCTCTCTTTTGCAGTCTCATGAATTATTCAGG
AACTCCCTTACACCAATATACACACTGACCAACCCAACCAACAAGCGCTATTTCCTGATTGTTTCGAAGTATCCGTTGCCCCTGTCAAGGGCAAAAAAGT
GGTTCTTGATTTCCAGGGAGGCAACGCCACCAGCGATGCCGGTGTCCTGCTGTTGAAGGAAGTCGAGTCCATGACCAGGATCGTTCCGAAGCTTGCCGAT
TGCATTGCTGATTCCCGTCGGACCTCATCTGTCATGCATTCGATCCCTGACCTGATCGCCCAGCGGGTCTACCAGATCGCCTGCGGCTATGAGGACGGCA
ACGACAGCAATTCCATGCGGAAGGATCCCGCTCTCAAGATGGCCCTCAACCGTCTTCCTGAAAGCGGCGATGACCTTGCCAGCCAGCCTACCTTCAGCAG
GCTGGAGAACATGGTTACCCGTCCGGAGCTCTATCGTATGGCTGTCGGGTTCCTCGATCATTTCCTTGACTCCTACACCGAGGCACCGCGGGTCATCGTC
CTGGACTTTGACGATACCGAGGATGTTGTTCATGGCAAACAGCAGCTGGCGCTTTTCAACGGCTATCACCAGGAGACCTGTTACCAGCCTCTCCATGTTT
TCGAGGGGTTGACTGGCAAGCTGATCGCCTCGATCCTTCGCCCCGGCAGGCGTCCTACCGGCAAGGAGATTGTATCATACGTGAAGCGCATTGTCCGCCA
TATCCGGAGCAGGTGGCCGGAAACAATCATCGTCTACCGCGGCGACAGCCATTACGGTGTGCCGGAAGTCTACTCCTTCCTTGCCAGAGAGCAGAACTGC
TACAGCGTGACCGGCCTCGGCGGTAATGACGTGCTGCTTCGCTCCGTCAAGGACATTATTGAGGAGGTCAAGAAGCATGGAGCCGGATACCGCCGTTACC
ATACCTTTCAGTATCAGGCACGGAGCTGGAAGGAGACCCGCAGAGTGGTCGCCAAGGTCGAGATGACCGAAAAGGGGCTGAACGTGCGCTTCATCAGCAC
CGACATGCAGGAGGCAAAGGCCAAGACTCTGTACGAGCAGATTTACAGTGCACGTGGCAACGATGAACTCTACATCAAGGCGCATAAAACGTTCATGAAA
AGCGACCGGACCTCATGCCATCGCTTTCTTGCCAACCAGTTCAGGGTCTTCCTGCATTCGGCGGCCTATGTCCTGGTCCACGCCTTCCAGACCAACCTGC
TCCGGGGCACCGCCCTTGCCACGGCGACCTTCGAGACAATCCGATTGAAGCTCCTGAAAATCGGAGCGAAGGTCATTGAGATGAAGACACGCATCAAGGT
GCATCTGCCGACCTCATATCCGTACAAACCGATACTGAACAAGTGCTTCGCCGTCCTTGAGCACCTGCGATCAGTCCCATGGCCATCAACAGCAATTCCG
TAATGCTGTATCGTTTCCAGAAGGGGAAGGTAACAATCAAACAGAGCTACAGGAAGGGCGTAAAAGTCATGACGTCAAGGCAAGACTATGGCCTCATGGT
ATCTGAGGCCATAGTCTTACGGGGATAAGCCGCTTTTCCGGCATCAGTAAATTTCCGATAAGGGGTGAACGTATGACGCGAAGACAAGACAGGTCGGCAT
CTCAGGTTGGCTTCGCCTATGGCAGGCTCATTTTTGGCTCGAGATGCCTCTCTTTTGCAGTCTCATGAATTATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1407 bp | 468 aa | 97 | 1503 | + | No |
Chemistry : DDE
ORF sequence :
MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNATSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYED
GNDSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLH
VFEGLTGKLIASILRPGRRPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRR
YHTFQYQARSWKETRRVVAKVEMTEKGLNVRFISTDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTN
LLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCFAVLEHLRSVPWPSTAIP
GNDSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLH
VFEGLTGKLIASILRPGRRPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRR
YHTFQYQARSWKETRRVVAKVEMTEKGLNVRFISTDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTN
LLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCFAVLEHLRSVPWPSTAIP
Blast result :
Comments
ISCph6 is 62% aa similar to ISMesp2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Bryant,D.A. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Bryant,D.A. and Richardson,P. (2006) Direct submission GenBank.