ISDeac1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY078159 ND Delftia acidovorans
Delftia acidovorans P4a
DNA section
IS Length : 1736 bp

Ends


IR Length : 16/19

IRL : CCCGAATTTTTCATAAACAGAGGCTGGTCTCGTTTAACCTTTTGATATAA
IRR : CCCGGATGTTTCATAAAAACGGCAATCTGCTCAAATTTTGAGCAGATTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GATGCAGGCACTAGATTCGGATGG4

DNA sequence

CCCGAATTTTTCATAAACAGAGGCTGGTCTCGTTTAACCTTTTGATATAAAAGGAGTTACGCCAATAACGCTTCGTACGAAGCTTAAACGAGACCGCCAT
GCGTGATTCTACCCAAAACCAGTTGCGCTTTCCTGCCATTGCCGGCTTTACCGTGCGCGCCGACTTCGAAGGAGGCGCGCTTTCGAGCGACTTTGGCCCA
TTGCTGCTGCGTGGCGTCGAACAGCAGTGCGGGCTGATCGGCCGCCTGGCGGGGGCGATCCATGACGGCCGGCATCCGTCCTATATCGAGCACAGCGTCG
TCGATCTGCTGCGCCAGCGGATCTACCAGAGCGCCTGCGGCTATGTCGACGGCAATGACGCCAACAGCCTGCGCCGCGACCCTATGTTCAAGCTGGCGCT
GGGGCATGCACCGTTGGATGAAGCCACTGCGCTGGCCTCGGGGCCGACCTTCTCGCGCCTGGAGAACAGCCTCAGCCGCAAAGACATCTACCGCTTGGCC
AGGGCCTTCGTCGAGGGCTTCATCGCCAGTTACGCGCAGGCCCCGCGCATTATCGTGCTGGACATGGACCACTCCGAAGACCGTACCCACGGCCAGCAGG
AGCTGGCCTTCTATAACCATCATTACCAAAGCCATTGCTACCTGCCGCTGTTTCTCTTCGAGGGGCTGTCGGGCAAACTCATCACCGCCGTGCTGCGCCC
GGGCAAGCGGCCCACGGGGCGAGAGAACGCCGCCATCGTCGGGCGCGTGCTGCGTCTGCTGCGCCGGGCCTGGCCGCACACCCACATTGTCCTGCGCGGT
GACGGGCACTTCGCCAATCCCGAACTGATGGCCCTGTGCGAATCGGATGAACAACTCGACTTCATCTTCGGCCTGGCCGGCAACTCGGTCTTGTCCCCCA
AAGCTGAGCCACTGCTCAACAAGGCGCGGGCGTTGCGCCAATCCCGACTCGACTACGCCCGCCGCACAGGCACAGCAGCGCCGGGCGCCGTACGGCTGTA
TGAAAATCTCGACTACAAGGCGCGCTCCTGGGCCAAATCCTACCGGGTGGTACTCAAGGCCGAGGTGATGGCGCTCGGCGCCAACCCGCGCTTCGTGGTC
ACGTCGCTCGGCGATCCGAGCCCAGAGGCGCTGTACCGGGACCTGTACTGCGCCCGCGGCCAGGACGAGAACTTCATCAAGGCGGTGAAGAACGACCTGG
CCAGTGACCGCACCTCCGATCATGCATTCCTGGCCAACCACCTGCGCCTGTTCTATGCCTGCGCCGCCTACTGCCTGATCCACAACCTGCGCGAGAACAC
GCTGTGCCATACCGAGTTGGCCCGGGCGCAGCCGATGTCGATCATCCTGAAGCTGTTTAAACTGGCCGTGCGGGTGGTGCAATACAAGGACCGGATCAAG
TTGCACCTGCCGAGCGCCTGTCCGGTCAAGGGCCTGCTGCACCGCGTCAGCGAACTGCTCTACCTCGCTCGCCCGCCTGCCCCAGGCTAGCGGCTGACGC
AGAACGCCGCCTCGGCAACCGCAATGACCTTGATCTGGCACCGCCAGCGGCACTGGCACGCCTGGAGCCAGCCATTCAGGGCGTGCCGCTCCAACAATGC
GTACCGCAGCCTTGGTTTTTGTGCACAGCACATCAACGCCGACCTGGCCGCGCCCGGCCCAGCCTCCAAGCGCGCGAGCAAAAACGGCAATCTGCTCAAA
ATTTGAGCAGATTGCCGTTTTTATGAAACATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1392 bp463 aa991490+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRDSTQNQLRFPAIAGFTVRADFEGGALSSDFGPLLLRGVEQQCGLIGRLAGAIHDGRHPSYIEHSVVDLLRQRIYQSACGYVDGNDANSLRRDPMFKLA
LGHAPLDEATALASGPTFSRLENSLSRKDIYRLARAFVEGFIASYAQAPRIIVLDMDHSEDRTHGQQELAFYNHHYQSHCYLPLFLFEGLSGKLITAVLR
PGKRPTGRENAAIVGRVLRLLRRAWPHTHIVLRGDGHFANPELMALCESDEQLDFIFGLAGNSVLSPKAEPLLNKARALRQSRLDYARRTGTAAPGAVRL
YENLDYKARSWAKSYRVVLKAEVMALGANPRFVVTSLGDPSPEALYRDLYCARGQDENFIKAVKNDLASDRTSDHAFLANHLRLFYACAAYCLIHNLREN
TLCHTELARAQPMSIILKLFKLAVRVVQYKDRIKLHLPSACPVKGLLHRVSELLYLARPPAPG

 

Blast result :
Comments
ISDeac1 is 69% aa similar to ISCARN98.
References
1] Isfinder annotation (2009)
2] Hoffmann,D., Kleinsteuber,S., Mueller,R.H. and Babel,W. (2001) Acta Biotechnol. 21, 321-331.
3] Hoffmann,D., Kleinsteuber,S., Muller,R.H. and Babel,W. (2003) Microbiology (Reading, Engl.) 149 (Pt 9), 2545-2556