ISDeac1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY078159 | ND | Delftia acidovorans | Delftia acidovorans P4a |
DNA section
IS Length : 1736 bp
Ends
IR Length : 16/19
IRL : CCCGAATTTTTCATAAACAGAGGCTGGTCTCGTTTAACCTTTTGATATAA
IRR : CCCGGATGTTTCATAAAAACGGCAATCTGCTCAAATTTTGAGCAGATTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGCAGGCA | CTAG | ATTCGGATGG | 4 |
DNA sequence
CCCGAATTTTTCATAAACAGAGGCTGGTCTCGTTTAACCTTTTGATATAAAAGGAGTTACGCCAATAACGCTTCGTACGAAGCTTAAACGAGACCGCCAT
GCGTGATTCTACCCAAAACCAGTTGCGCTTTCCTGCCATTGCCGGCTTTACCGTGCGCGCCGACTTCGAAGGAGGCGCGCTTTCGAGCGACTTTGGCCCA
TTGCTGCTGCGTGGCGTCGAACAGCAGTGCGGGCTGATCGGCCGCCTGGCGGGGGCGATCCATGACGGCCGGCATCCGTCCTATATCGAGCACAGCGTCG
TCGATCTGCTGCGCCAGCGGATCTACCAGAGCGCCTGCGGCTATGTCGACGGCAATGACGCCAACAGCCTGCGCCGCGACCCTATGTTCAAGCTGGCGCT
GGGGCATGCACCGTTGGATGAAGCCACTGCGCTGGCCTCGGGGCCGACCTTCTCGCGCCTGGAGAACAGCCTCAGCCGCAAAGACATCTACCGCTTGGCC
AGGGCCTTCGTCGAGGGCTTCATCGCCAGTTACGCGCAGGCCCCGCGCATTATCGTGCTGGACATGGACCACTCCGAAGACCGTACCCACGGCCAGCAGG
AGCTGGCCTTCTATAACCATCATTACCAAAGCCATTGCTACCTGCCGCTGTTTCTCTTCGAGGGGCTGTCGGGCAAACTCATCACCGCCGTGCTGCGCCC
GGGCAAGCGGCCCACGGGGCGAGAGAACGCCGCCATCGTCGGGCGCGTGCTGCGTCTGCTGCGCCGGGCCTGGCCGCACACCCACATTGTCCTGCGCGGT
GACGGGCACTTCGCCAATCCCGAACTGATGGCCCTGTGCGAATCGGATGAACAACTCGACTTCATCTTCGGCCTGGCCGGCAACTCGGTCTTGTCCCCCA
AAGCTGAGCCACTGCTCAACAAGGCGCGGGCGTTGCGCCAATCCCGACTCGACTACGCCCGCCGCACAGGCACAGCAGCGCCGGGCGCCGTACGGCTGTA
TGAAAATCTCGACTACAAGGCGCGCTCCTGGGCCAAATCCTACCGGGTGGTACTCAAGGCCGAGGTGATGGCGCTCGGCGCCAACCCGCGCTTCGTGGTC
ACGTCGCTCGGCGATCCGAGCCCAGAGGCGCTGTACCGGGACCTGTACTGCGCCCGCGGCCAGGACGAGAACTTCATCAAGGCGGTGAAGAACGACCTGG
CCAGTGACCGCACCTCCGATCATGCATTCCTGGCCAACCACCTGCGCCTGTTCTATGCCTGCGCCGCCTACTGCCTGATCCACAACCTGCGCGAGAACAC
GCTGTGCCATACCGAGTTGGCCCGGGCGCAGCCGATGTCGATCATCCTGAAGCTGTTTAAACTGGCCGTGCGGGTGGTGCAATACAAGGACCGGATCAAG
TTGCACCTGCCGAGCGCCTGTCCGGTCAAGGGCCTGCTGCACCGCGTCAGCGAACTGCTCTACCTCGCTCGCCCGCCTGCCCCAGGCTAGCGGCTGACGC
AGAACGCCGCCTCGGCAACCGCAATGACCTTGATCTGGCACCGCCAGCGGCACTGGCACGCCTGGAGCCAGCCATTCAGGGCGTGCCGCTCCAACAATGC
GTACCGCAGCCTTGGTTTTTGTGCACAGCACATCAACGCCGACCTGGCCGCGCCCGGCCCAGCCTCCAAGCGCGCGAGCAAAAACGGCAATCTGCTCAAA
ATTTGAGCAGATTGCCGTTTTTATGAAACATCCGGG
GCGTGATTCTACCCAAAACCAGTTGCGCTTTCCTGCCATTGCCGGCTTTACCGTGCGCGCCGACTTCGAAGGAGGCGCGCTTTCGAGCGACTTTGGCCCA
TTGCTGCTGCGTGGCGTCGAACAGCAGTGCGGGCTGATCGGCCGCCTGGCGGGGGCGATCCATGACGGCCGGCATCCGTCCTATATCGAGCACAGCGTCG
TCGATCTGCTGCGCCAGCGGATCTACCAGAGCGCCTGCGGCTATGTCGACGGCAATGACGCCAACAGCCTGCGCCGCGACCCTATGTTCAAGCTGGCGCT
GGGGCATGCACCGTTGGATGAAGCCACTGCGCTGGCCTCGGGGCCGACCTTCTCGCGCCTGGAGAACAGCCTCAGCCGCAAAGACATCTACCGCTTGGCC
AGGGCCTTCGTCGAGGGCTTCATCGCCAGTTACGCGCAGGCCCCGCGCATTATCGTGCTGGACATGGACCACTCCGAAGACCGTACCCACGGCCAGCAGG
AGCTGGCCTTCTATAACCATCATTACCAAAGCCATTGCTACCTGCCGCTGTTTCTCTTCGAGGGGCTGTCGGGCAAACTCATCACCGCCGTGCTGCGCCC
GGGCAAGCGGCCCACGGGGCGAGAGAACGCCGCCATCGTCGGGCGCGTGCTGCGTCTGCTGCGCCGGGCCTGGCCGCACACCCACATTGTCCTGCGCGGT
GACGGGCACTTCGCCAATCCCGAACTGATGGCCCTGTGCGAATCGGATGAACAACTCGACTTCATCTTCGGCCTGGCCGGCAACTCGGTCTTGTCCCCCA
AAGCTGAGCCACTGCTCAACAAGGCGCGGGCGTTGCGCCAATCCCGACTCGACTACGCCCGCCGCACAGGCACAGCAGCGCCGGGCGCCGTACGGCTGTA
TGAAAATCTCGACTACAAGGCGCGCTCCTGGGCCAAATCCTACCGGGTGGTACTCAAGGCCGAGGTGATGGCGCTCGGCGCCAACCCGCGCTTCGTGGTC
ACGTCGCTCGGCGATCCGAGCCCAGAGGCGCTGTACCGGGACCTGTACTGCGCCCGCGGCCAGGACGAGAACTTCATCAAGGCGGTGAAGAACGACCTGG
CCAGTGACCGCACCTCCGATCATGCATTCCTGGCCAACCACCTGCGCCTGTTCTATGCCTGCGCCGCCTACTGCCTGATCCACAACCTGCGCGAGAACAC
GCTGTGCCATACCGAGTTGGCCCGGGCGCAGCCGATGTCGATCATCCTGAAGCTGTTTAAACTGGCCGTGCGGGTGGTGCAATACAAGGACCGGATCAAG
TTGCACCTGCCGAGCGCCTGTCCGGTCAAGGGCCTGCTGCACCGCGTCAGCGAACTGCTCTACCTCGCTCGCCCGCCTGCCCCAGGCTAGCGGCTGACGC
AGAACGCCGCCTCGGCAACCGCAATGACCTTGATCTGGCACCGCCAGCGGCACTGGCACGCCTGGAGCCAGCCATTCAGGGCGTGCCGCTCCAACAATGC
GTACCGCAGCCTTGGTTTTTGTGCACAGCACATCAACGCCGACCTGGCCGCGCCCGGCCCAGCCTCCAAGCGCGCGAGCAAAAACGGCAATCTGCTCAAA
ATTTGAGCAGATTGCCGTTTTTATGAAACATCCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1392 bp | 463 aa | 99 | 1490 | + | No |
Chemistry : DDE
ORF sequence :
MRDSTQNQLRFPAIAGFTVRADFEGGALSSDFGPLLLRGVEQQCGLIGRLAGAIHDGRHPSYIEHSVVDLLRQRIYQSACGYVDGNDANSLRRDPMFKLA
LGHAPLDEATALASGPTFSRLENSLSRKDIYRLARAFVEGFIASYAQAPRIIVLDMDHSEDRTHGQQELAFYNHHYQSHCYLPLFLFEGLSGKLITAVLR
PGKRPTGRENAAIVGRVLRLLRRAWPHTHIVLRGDGHFANPELMALCESDEQLDFIFGLAGNSVLSPKAEPLLNKARALRQSRLDYARRTGTAAPGAVRL
YENLDYKARSWAKSYRVVLKAEVMALGANPRFVVTSLGDPSPEALYRDLYCARGQDENFIKAVKNDLASDRTSDHAFLANHLRLFYACAAYCLIHNLREN
TLCHTELARAQPMSIILKLFKLAVRVVQYKDRIKLHLPSACPVKGLLHRVSELLYLARPPAPG
LGHAPLDEATALASGPTFSRLENSLSRKDIYRLARAFVEGFIASYAQAPRIIVLDMDHSEDRTHGQQELAFYNHHYQSHCYLPLFLFEGLSGKLITAVLR
PGKRPTGRENAAIVGRVLRLLRRAWPHTHIVLRGDGHFANPELMALCESDEQLDFIFGLAGNSVLSPKAEPLLNKARALRQSRLDYARRTGTAAPGAVRL
YENLDYKARSWAKSYRVVLKAEVMALGANPRFVVTSLGDPSPEALYRDLYCARGQDENFIKAVKNDLASDRTSDHAFLANHLRLFYACAAYCLIHNLREN
TLCHTELARAQPMSIILKLFKLAVRVVQYKDRIKLHLPSACPVKGLLHRVSELLYLARPPAPG
Blast result :
Comments
ISDeac1 is 69% aa similar to ISCARN98.
References
1] Isfinder annotation (2009)
2] Hoffmann,D., Kleinsteuber,S., Mueller,R.H. and Babel,W. (2001) Acta Biotechnol. 21, 321-331.
3] Hoffmann,D., Kleinsteuber,S., Muller,R.H. and Babel,W. (2003) Microbiology (Reading, Engl.) 149 (Pt 9), 2545-2556
2] Hoffmann,D., Kleinsteuber,S., Mueller,R.H. and Babel,W. (2001) Acta Biotechnol. 21, 321-331.
3] Hoffmann,D., Kleinsteuber,S., Muller,R.H. and Babel,W. (2003) Microbiology (Reading, Engl.) 149 (Pt 9), 2545-2556