ISCra1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ787200 ND Cylindrospermopsis raciborskii
Cylindrospermopsis raciborskii T3
DNA section
IS Length : 1753 bp

Ends


IR Length : 14

IRL : CCTGGATTATTCATCAGAGTAGAATAAAAATCGCTGAAAGGGTTATACTG
IRR : CCTGCATTATTCATGAAGGCAAAAACAGGAAAAACAAAACCTAACATTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GCAAGCCTATTTAAACAGCA0

DNA sequence

CCTGGATTATTCATCAGAGTAGAATAAAAATCGCTGAAAGGGTTATACTGCAACAGCTACGGCAATTTTGTCATCCCAACACTCTGTAATTCCTATCCGT
CACCAAATTAAATAATAACTAACTTTAGTTATAAACTGAAAAAAAGGAATAAAAACAGCTATAATAAATCAGGATTTTAAAAATTAAACCTATCCACTAT
ATATGACTAAATCTTCCTCAAGATTATCTTTAAATTTCTTCGATAAAAAAACTTTAGATCTGACTTTTTCTGATATGAGTTTAAGTAGTGATGGCGGAAT
TATTCTGGCACGACAAGTAGAAGAAAAGGTAAAAATTTGTCAAGATATGGCAGATTGTTTGACGGATAATCGGGACCAAACTAAAGTCAAACATTCTCTT
TCTCAATTAATTAGCCAACGAATTTATCAAATAATTGCTGGCTATGAAGATAGCAACGATAGTAATAAATTGCGCCAAGATCCAATTTTTAAGCTAGTTT
GTAATCAAGTTCCCACAGTAGGAGAAAACTTATTAGCTAGTCAACCAACTATGAGTCGTTTAGAAAATCAGGTGACTCAAAAAGATATCAAACAAATTCG
TCGGTTATTTGTTGATAAATTCCTAGAATCCTATCCTCGGGAATCAAAAGAGATTGTCCTGGACATAGATGCGTGGGATGCTCTAACTCATGGTCATCAA
CAACTGAGCTTATTTAATGGTTACCATAGGCATGATATCTACTTTCCAGTTCTGATTAATGAAGCTTCCAGTGGTTATCCATTAGTTCTACAACTAAGGG
CGGGAAATTCTCACTCTGGTAAAGGAGTAGCTGGCATTCTAAAATGGTTATTTTTGCGAATCAAAAGAGCCTTACCTGAAATTAGAATTGTTCTGAGGGG
AGACGGGGGTTTCTCGTTACCAGAAATCATTGAGGTTTGTGAAAAAAGCGGGGTTGGATATGTTTTTGGATTCAGCAATAATGATGTCTTAAAACGAAAA
ATTAATTACCTTCTTGACCGAGCCAGACTGGAATATTGTCGCACAGGAGAAAAAGTTCGTTTATTTGATGATGTGTATTACGCAGCTCGGAGTTGGTCAG
AACCTCGGCGAGTAATTATGAAAGCAGAATGGCTAGAAAAAGGACCCAATCCTAGATTTATAATTACTAGCTTGGAAACAGAAGCTCAGGATTTATACGA
TAAATTTTATGTTCAAAGAGGAGCTACTTCAGAGCATAGAATTAAGGAATTAAAACTGGGGATAAAATCAGATAGACTCAGCTGTGAGAAATTTATTGTC
AATCAGTTTCGGTTATTTTTATCTCAAGCAGCTTACATTTTAATGTTGGGAATTCGGCAAGCAGCACAGGGAACAAAACTGGCTAAAGCCCAGGTTCCTA
GGTTAAGGGAAACGATTATCAAAATAGCAGCGAAGGTGACAGTTTCCGCAAGAAGGGTGTTGGTAGAGCTACCATATTACTGTCCTTTTTCGTCTGAAAT
TAATTTGATTATGGAGCGTTTGGCGAGCGAGTTTGAAATAATTTTTTCTTAAAATTAAGCCTTGATAGGATAGGTGTGTCTAAATGGGGGATTAAGAGAA
GTTTTGAGGTTTAAAATATTGATTTTGGGGTTAAAATCAGGGATTTTAATTAGGTTTAATTTACTTTTTACTTATTAAGTTAGTTCCGCCATAAATTGGG
GTATAAATGTTAGGTTTTGTTTTTCCTGTTTTTGCCTTCATGAATAATGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa2031552+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKSSSRLSLNFFDKKTLDLTFSDMSLSSDGGIILARQVEEKVKICQDMADCLTDNRDQTKVKHSLSQLISQRIYQIIAGYEDSNDSNKLRQDPIFKLVC
NQVPTVGENLLASQPTMSRLENQVTQKDIKQIRRLFVDKFLESYPRESKEIVLDIDAWDALTHGHQQLSLFNGYHRHDIYFPVLINEASSGYPLVLQLRA
GNSHSGKGVAGILKWLFLRIKRALPEIRIVLRGDGGFSLPEIIEVCEKSGVGYVFGFSNNDVLKRKINYLLDRARLEYCRTGEKVRLFDDVYYAARSWSE
PRRVIMKAEWLEKGPNPRFIITSLETEAQDLYDKFYVQRGATSEHRIKELKLGIKSDRLSCEKFIVNQFRLFLSQAAYILMLGIRQAAQGTKLAKAQVPR
LRETIIKIAAKVTVSARRVLVELPYYCPFSSEINLIMERLASEFEIIFS

 

Blast result :
Comments
ISCra1 is 75% aa similar to ISAcma21.
References
1] ISfinder annotation (2009)
2] Kellmann,R., Mihali,T.K., Jeon,Y.J., Pickford,R., Pomati,F. and Neilan,B.A. (2008) Appl. Environ. Microbiol. 74 (13), 4044-4053.