ISCysp11

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXW01000003 ND Cyanothece sp.
Cyanothece sp. CCY 0110
DNA section
IS Length : 1754 bp

Ends


IR Length : 20/21

IRL : CCTGCATTATTCATGAGAGAATTGCGAAAAAGCCTGAAAGCCTTATGCCA
IRR : CCTGCATTATTCATGAAGAAAAAACAAAACCAAAAACATAAGAAATTAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCGCCACACATAAGTTATACCAA4
TTTGTTCTAATTAAGCAACG0
AAAATATAATTTAGATTTAGGAGA4
GATTATCTAGATAAATTAAA0
TTAGAAAGAGCTAAAGAGATTGTC4

DNA sequence

CCTGCATTATTCATGAGAGAATTGCGAAAAAGCCTGAAAGCCTTATGCCATCAGGAATATGGAGATTTGACCCCAATAACAGTCTGTGATTTTTATCTAT
TACTAATTATCGACTATTTAACTATCAAAAATAAGAGGTAAAAGTCGTTTACAAAAAGTTCATTTTAGCCTATAATAAATAAAGAAATAAAGGTTATATC
AATCAATCAATAATTAATGAAAGAGTCTTCAGAAAAACTCCCCTTTAATTTTAAGACGAAGAAAACATTGGAGGTAAAGTTTTCAGGACTAGACCTAAGT
TTGGATGCGGGATTATTGCTAATTAAGCAAGCAGAAGACAATCTGAAAGTTGGCCAAGGAATCTCAAATTGCTTGGAAGATAATAGAGAACAACATAAAG
TCAAACATTCACTGTTTCAGTTAGTAAGTCAAAGAATCTATCAAATAGCAGCAGGATATGAAGATACCAATGATAGTAATTACTTACGACATGATCCAAT
TTTCAAAATTATTTGTGATAAAGTCCCCGAAATGGGAGCAGAATTATTAGCTAGTCAACCGACAATGAGTCGACTAGAAAATGGAATAACTAAACAAGAA
ATTAAAAGGATACGTCGTTTTTTTGTCGATAAATTTCTTCAAAATCATCTCTCAAACCCAGAACAAATAGTATTAGATATAGATGGATTTGATGCTTACA
CTCATGGACATCAACAGTTAAGCTTATTTCATGGTTATTATGGACATCAAATTTACTTTCCTGTATTAGTTAATGAAGCCAAAAGTGGTTATCCTTTAAT
TTTACACTTAAGACCAGGAAATTCTCACGCAGGAAAAGGAGTTTTAGGATTACTAAGATGGTTATTTTGGCGTTTAAGAAAAGCTTGGCCTGATGTCAAA
ATAATCTTACGAGGCGATGGAGGGTTTTCTTTACCTGAAATTATTAATCTGTGCGAACAAAAAAATGTAAAATATGTTTTTGGTTTTAGTAGTAATGCTG
TTTTAAAACGGAAAATAAATTATCTTCTTGACTTAGCCAGATTACAGTATTTTCGGACTAAAGAGAAGGCTCGTTTGTTCGATGATGTATATTATGCTGC
AAAAAGTTGGAAAAAACCTCGTCGACTTATTATGAAAGCAGAATGGTTAGAAAAAGGAGCAAATCCTCGATTTTTAGTAACTAATTTGGAGGCAGATGCA
CAAGAAATTTATGATAATTTTTATGTTCAAAGAGGAGCTACTTCTGAACATCGAATCAAGGAATTGAAACTAGGAATTAATGCAGATCGTCTCAGTTGCC
ATAAATTTATTGTTAATCAATTTCGCTTATTTTTATGCCAAGCAGCTTATATTTTAATGCTTGAACTTCGGGCTTCTGCGGAAGGGACACGATTGGGGAA
GGCTCAAGTTTCTCGTTTGAGGGAAACCATCATAAAAATAGCTGCCAAAGTGACTGTTTCTGTTAGAAGAACTTTAGTAGAATTAGCTGCTCATTGTCCT
TTTCGTGAGGAAATACTCTGCATAATACAACGATTATCTTCGGGTAAACAATTGATTTTTTCCTAACATTCATCTCTCATAGGATTGGTGTATCCATCTA
ACGTTAAATTAGTCTTTTTTCTGTTCTTCCATTAATTTTCTGTGATTGAATTACGCCAATTCACTACTTTTTAAGAATCTATTTAATAAAAAATCGCTTT
TGATGCTAATTTCTTATGTTTTTGGTTTTGTTTTTTCTTCATGAATAATGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa2171566+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKESSEKLPFNFKTKKTLEVKFSGLDLSLDAGLLLIKQAEDNLKVGQGISNCLEDNREQHKVKHSLFQLVSQRIYQIAAGYEDTNDSNYLRHDPIFKIIC
DKVPEMGAELLASQPTMSRLENGITKQEIKRIRRFFVDKFLQNHLSNPEQIVLDIDGFDAYTHGHQQLSLFHGYYGHQIYFPVLVNEAKSGYPLILHLRP
GNSHAGKGVLGLLRWLFWRLRKAWPDVKIILRGDGGFSLPEIINLCEQKNVKYVFGFSSNAVLKRKINYLLDLARLQYFRTKEKARLFDDVYYAAKSWKK
PRRLIMKAEWLEKGANPRFLVTNLEADAQEIYDNFYVQRGATSEHRIKELKLGINADRLSCHKFIVNQFRLFLCQAAYILMLELRASAEGTRLGKAQVSR
LRETIIKIAAKVTVSVRRTLVELAAHCPFREEILCIIQRLSSGKQLIFS

 

Blast result :
Comments
ISCysp11 is 74% aa similar to ISAcma21.
References
1] ISfinder annotation (2009)
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.