ISCysp11
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXW01000003 | ND | Cyanothece sp. | Cyanothece sp. CCY 0110 |
DNA section
IS Length : 1754 bp
Ends
IR Length : 20/21
IRL : CCTGCATTATTCATGAGAGAATTGCGAAAAAGCCTGAAAGCCTTATGCCA
IRR : CCTGCATTATTCATGAAGAAAAAACAAAACCAAAAACATAAGAAATTAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCGCCACAC | ATAA | GTTATACCAA | 4 |
TTTGTTCTAA | TTAAGCAACG | 0 | |
AAAATATAAT | TTAG | ATTTAGGAGA | 4 |
GATTATCTAG | ATAAATTAAA | 0 | |
TTAGAAAGAG | CTAA | AGAGATTGTC | 4 |
DNA sequence
CCTGCATTATTCATGAGAGAATTGCGAAAAAGCCTGAAAGCCTTATGCCATCAGGAATATGGAGATTTGACCCCAATAACAGTCTGTGATTTTTATCTAT
TACTAATTATCGACTATTTAACTATCAAAAATAAGAGGTAAAAGTCGTTTACAAAAAGTTCATTTTAGCCTATAATAAATAAAGAAATAAAGGTTATATC
AATCAATCAATAATTAATGAAAGAGTCTTCAGAAAAACTCCCCTTTAATTTTAAGACGAAGAAAACATTGGAGGTAAAGTTTTCAGGACTAGACCTAAGT
TTGGATGCGGGATTATTGCTAATTAAGCAAGCAGAAGACAATCTGAAAGTTGGCCAAGGAATCTCAAATTGCTTGGAAGATAATAGAGAACAACATAAAG
TCAAACATTCACTGTTTCAGTTAGTAAGTCAAAGAATCTATCAAATAGCAGCAGGATATGAAGATACCAATGATAGTAATTACTTACGACATGATCCAAT
TTTCAAAATTATTTGTGATAAAGTCCCCGAAATGGGAGCAGAATTATTAGCTAGTCAACCGACAATGAGTCGACTAGAAAATGGAATAACTAAACAAGAA
ATTAAAAGGATACGTCGTTTTTTTGTCGATAAATTTCTTCAAAATCATCTCTCAAACCCAGAACAAATAGTATTAGATATAGATGGATTTGATGCTTACA
CTCATGGACATCAACAGTTAAGCTTATTTCATGGTTATTATGGACATCAAATTTACTTTCCTGTATTAGTTAATGAAGCCAAAAGTGGTTATCCTTTAAT
TTTACACTTAAGACCAGGAAATTCTCACGCAGGAAAAGGAGTTTTAGGATTACTAAGATGGTTATTTTGGCGTTTAAGAAAAGCTTGGCCTGATGTCAAA
ATAATCTTACGAGGCGATGGAGGGTTTTCTTTACCTGAAATTATTAATCTGTGCGAACAAAAAAATGTAAAATATGTTTTTGGTTTTAGTAGTAATGCTG
TTTTAAAACGGAAAATAAATTATCTTCTTGACTTAGCCAGATTACAGTATTTTCGGACTAAAGAGAAGGCTCGTTTGTTCGATGATGTATATTATGCTGC
AAAAAGTTGGAAAAAACCTCGTCGACTTATTATGAAAGCAGAATGGTTAGAAAAAGGAGCAAATCCTCGATTTTTAGTAACTAATTTGGAGGCAGATGCA
CAAGAAATTTATGATAATTTTTATGTTCAAAGAGGAGCTACTTCTGAACATCGAATCAAGGAATTGAAACTAGGAATTAATGCAGATCGTCTCAGTTGCC
ATAAATTTATTGTTAATCAATTTCGCTTATTTTTATGCCAAGCAGCTTATATTTTAATGCTTGAACTTCGGGCTTCTGCGGAAGGGACACGATTGGGGAA
GGCTCAAGTTTCTCGTTTGAGGGAAACCATCATAAAAATAGCTGCCAAAGTGACTGTTTCTGTTAGAAGAACTTTAGTAGAATTAGCTGCTCATTGTCCT
TTTCGTGAGGAAATACTCTGCATAATACAACGATTATCTTCGGGTAAACAATTGATTTTTTCCTAACATTCATCTCTCATAGGATTGGTGTATCCATCTA
ACGTTAAATTAGTCTTTTTTCTGTTCTTCCATTAATTTTCTGTGATTGAATTACGCCAATTCACTACTTTTTAAGAATCTATTTAATAAAAAATCGCTTT
TGATGCTAATTTCTTATGTTTTTGGTTTTGTTTTTTCTTCATGAATAATGCAGG
TACTAATTATCGACTATTTAACTATCAAAAATAAGAGGTAAAAGTCGTTTACAAAAAGTTCATTTTAGCCTATAATAAATAAAGAAATAAAGGTTATATC
AATCAATCAATAATTAATGAAAGAGTCTTCAGAAAAACTCCCCTTTAATTTTAAGACGAAGAAAACATTGGAGGTAAAGTTTTCAGGACTAGACCTAAGT
TTGGATGCGGGATTATTGCTAATTAAGCAAGCAGAAGACAATCTGAAAGTTGGCCAAGGAATCTCAAATTGCTTGGAAGATAATAGAGAACAACATAAAG
TCAAACATTCACTGTTTCAGTTAGTAAGTCAAAGAATCTATCAAATAGCAGCAGGATATGAAGATACCAATGATAGTAATTACTTACGACATGATCCAAT
TTTCAAAATTATTTGTGATAAAGTCCCCGAAATGGGAGCAGAATTATTAGCTAGTCAACCGACAATGAGTCGACTAGAAAATGGAATAACTAAACAAGAA
ATTAAAAGGATACGTCGTTTTTTTGTCGATAAATTTCTTCAAAATCATCTCTCAAACCCAGAACAAATAGTATTAGATATAGATGGATTTGATGCTTACA
CTCATGGACATCAACAGTTAAGCTTATTTCATGGTTATTATGGACATCAAATTTACTTTCCTGTATTAGTTAATGAAGCCAAAAGTGGTTATCCTTTAAT
TTTACACTTAAGACCAGGAAATTCTCACGCAGGAAAAGGAGTTTTAGGATTACTAAGATGGTTATTTTGGCGTTTAAGAAAAGCTTGGCCTGATGTCAAA
ATAATCTTACGAGGCGATGGAGGGTTTTCTTTACCTGAAATTATTAATCTGTGCGAACAAAAAAATGTAAAATATGTTTTTGGTTTTAGTAGTAATGCTG
TTTTAAAACGGAAAATAAATTATCTTCTTGACTTAGCCAGATTACAGTATTTTCGGACTAAAGAGAAGGCTCGTTTGTTCGATGATGTATATTATGCTGC
AAAAAGTTGGAAAAAACCTCGTCGACTTATTATGAAAGCAGAATGGTTAGAAAAAGGAGCAAATCCTCGATTTTTAGTAACTAATTTGGAGGCAGATGCA
CAAGAAATTTATGATAATTTTTATGTTCAAAGAGGAGCTACTTCTGAACATCGAATCAAGGAATTGAAACTAGGAATTAATGCAGATCGTCTCAGTTGCC
ATAAATTTATTGTTAATCAATTTCGCTTATTTTTATGCCAAGCAGCTTATATTTTAATGCTTGAACTTCGGGCTTCTGCGGAAGGGACACGATTGGGGAA
GGCTCAAGTTTCTCGTTTGAGGGAAACCATCATAAAAATAGCTGCCAAAGTGACTGTTTCTGTTAGAAGAACTTTAGTAGAATTAGCTGCTCATTGTCCT
TTTCGTGAGGAAATACTCTGCATAATACAACGATTATCTTCGGGTAAACAATTGATTTTTTCCTAACATTCATCTCTCATAGGATTGGTGTATCCATCTA
ACGTTAAATTAGTCTTTTTTCTGTTCTTCCATTAATTTTCTGTGATTGAATTACGCCAATTCACTACTTTTTAAGAATCTATTTAATAAAAAATCGCTTT
TGATGCTAATTTCTTATGTTTTTGGTTTTGTTTTTTCTTCATGAATAATGCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 217 | 1566 | + | No |
Chemistry : DDE
ORF sequence :
MKESSEKLPFNFKTKKTLEVKFSGLDLSLDAGLLLIKQAEDNLKVGQGISNCLEDNREQHKVKHSLFQLVSQRIYQIAAGYEDTNDSNYLRHDPIFKIIC
DKVPEMGAELLASQPTMSRLENGITKQEIKRIRRFFVDKFLQNHLSNPEQIVLDIDGFDAYTHGHQQLSLFHGYYGHQIYFPVLVNEAKSGYPLILHLRP
GNSHAGKGVLGLLRWLFWRLRKAWPDVKIILRGDGGFSLPEIINLCEQKNVKYVFGFSSNAVLKRKINYLLDLARLQYFRTKEKARLFDDVYYAAKSWKK
PRRLIMKAEWLEKGANPRFLVTNLEADAQEIYDNFYVQRGATSEHRIKELKLGINADRLSCHKFIVNQFRLFLCQAAYILMLELRASAEGTRLGKAQVSR
LRETIIKIAAKVTVSVRRTLVELAAHCPFREEILCIIQRLSSGKQLIFS
DKVPEMGAELLASQPTMSRLENGITKQEIKRIRRFFVDKFLQNHLSNPEQIVLDIDGFDAYTHGHQQLSLFHGYYGHQIYFPVLVNEAKSGYPLILHLRP
GNSHAGKGVLGLLRWLFWRLRKAWPDVKIILRGDGGFSLPEIINLCEQKNVKYVFGFSSNAVLKRKINYLLDLARLQYFRTKEKARLFDDVYYAAKSWKK
PRRLIMKAEWLEKGANPRFLVTNLEADAQEIYDNFYVQRGATSEHRIKELKLGINADRLSCHKFIVNQFRLFLCQAAYILMLELRASAEGTRLGKAQVSR
LRETIIKIAAKVTVSVRRTLVELAAHCPFREEILCIIQRLSSGKQLIFS
Blast result :
Comments
ISCysp11 is 74% aa similar to ISAcma21.
References
1] ISfinder annotation (2009)
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.