ISRssp8
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMV01000012 | ND | Roseovarius sp. | Roseovarius sp. 217 |
DNA section
IS Length : 1614 bp
Ends
IR Length : 15/16
IRL : CCCGGATAATTCACGAGAAGGCGGCGGAGGTATCGTAACCATCTGAAATG
IRR : CCCGGATAATTCATGAAGCTGCATTAATGTGTTCCCGGGGCCGGTTTCAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGAACTATT | TTAG | GATTGCAGAA | 4 |
DNA sequence
CCCGGATAATTCACGAGAAGGCGGCGGAGGTATCGTAACCATCTGAAATGCTGTATGTTTTGGGTGCTACCGCCAAACATGCAGCTTTTGAGAGGACGAC
CCCCGCCATGGTCCAATCTACGTGCTCCACGCCCCGCCTGTCACCCCTCAATGGCAAGCCGATCCTGCTTGGATTTGACGGCGCAGACATGAGCTCCGAC
GCAGGGCTGACGCTGCTGCGCGAGATCGAGCGCGAGGCGGGTCTGGCGCAGCGGCTTGCAGATTGCCTGTGCGATCCGCGCGATCCGGCAAAAGTTCAGC
ATAGCCTGTGCGACATCATCCGTTTCCGGATCATGATGATCGCAGCTGGGTATGAAGACGGCAATGACGCGAACGCCTTGCGGCACGATCCCAGCTTCAG
GATTGCACTGGAGCGCGGCCCGGAAACCGGGGCGGCATTATGTTCGCAGCCGACGATTCCACGCATGGAAAACCTGCCCGATACTCGCGCGCTGATCCAC
ATGGGTCGCGAGATGGTCCGGTTCTACTGTCAGTCCTTTGCGCGCGCTCCAGGCCGGATCGTGCTCGATATAGATGATACCTTTGATGCGGTGAATGGCC
ACCAGCACCTGCGCCTGTTCAATGCGTTCTACGACGAGTTCGGCTTCCAGCCGATCGTCGTGTTCGACGGTGAAGGCCGGCTCGTGGGGATACTGTTGCG
CCCGGCCCGCCGGCCCAAGGGAGCCGAGAGCGCGGCCCATATCCGCCGGTTGATCCGGCAGATTGCCAGGCATTGGCCCGAGACGGAAATCCTGCTGCGG
GCGGACGGCCATTACTGCACCCCGGAGGTTCTGGACCTGTGTGACAGGCTCGGGCTGAGCTATGTCTTCGGTCTGTCAAAGAACGGCCGTCTGGCGCAAA
ACATCTCGGCTATGGAGGCATCGACGGCAGCGCGCTACACACGCACCCCTGGTCAGAAACTGCGCCGGTTCAAGACCTTTTCCTACGCGGCCCGGTCGTG
GTCGAAACCGCGCCGCGTGATAGCCCGCGTCGAGGTTGGCCCAATGGGGCGCGATACCCGCTACATCGTCACCAATCTCGAGGGCGGTCGCGGCAAGCAT
CTCTACGAGAAGTTCTATTCCGCACGCGGTCAGGCGGAAAACCACATCAAGGCATGGAAGACCCATCTCCCATCAGACCGAACATCATGCTCGAAGGCGA
ACGCCAACCAGATGCGTCTGATGCTGCACAGTTGCGCCTACTGGCTCTGGTGGAAATTGCGCGCCGCCTGTCCAAGGAGATCCCCATGGCGCCGCGCCCA
ATTCGACACCCTGCGGCTGCATCTCGTCAAGCTGGCTGCAACCATCGTCGAGAAGAAGACCCGGATCAGCATCACACTGCCGACATCATGTCCGCGACAG
GGTCTCCTCCATCTTCTCTTCGACGCGCTCGCCCCACCGAAAGCAGCCTGACGCGAGCGGCCCGACAACCCCGAAACATCAATCCATATTACCCAACAAC
CACGTCAACGACCGGCCAGCAAACCGGACGCAAACATCGGATGCGCGCGACAGACCCGAGATCCGTGAAACCGGCCCCGGGAACACATTAATGCAGCTTC
ATGAATTATCCGGG
CCCCGCCATGGTCCAATCTACGTGCTCCACGCCCCGCCTGTCACCCCTCAATGGCAAGCCGATCCTGCTTGGATTTGACGGCGCAGACATGAGCTCCGAC
GCAGGGCTGACGCTGCTGCGCGAGATCGAGCGCGAGGCGGGTCTGGCGCAGCGGCTTGCAGATTGCCTGTGCGATCCGCGCGATCCGGCAAAAGTTCAGC
ATAGCCTGTGCGACATCATCCGTTTCCGGATCATGATGATCGCAGCTGGGTATGAAGACGGCAATGACGCGAACGCCTTGCGGCACGATCCCAGCTTCAG
GATTGCACTGGAGCGCGGCCCGGAAACCGGGGCGGCATTATGTTCGCAGCCGACGATTCCACGCATGGAAAACCTGCCCGATACTCGCGCGCTGATCCAC
ATGGGTCGCGAGATGGTCCGGTTCTACTGTCAGTCCTTTGCGCGCGCTCCAGGCCGGATCGTGCTCGATATAGATGATACCTTTGATGCGGTGAATGGCC
ACCAGCACCTGCGCCTGTTCAATGCGTTCTACGACGAGTTCGGCTTCCAGCCGATCGTCGTGTTCGACGGTGAAGGCCGGCTCGTGGGGATACTGTTGCG
CCCGGCCCGCCGGCCCAAGGGAGCCGAGAGCGCGGCCCATATCCGCCGGTTGATCCGGCAGATTGCCAGGCATTGGCCCGAGACGGAAATCCTGCTGCGG
GCGGACGGCCATTACTGCACCCCGGAGGTTCTGGACCTGTGTGACAGGCTCGGGCTGAGCTATGTCTTCGGTCTGTCAAAGAACGGCCGTCTGGCGCAAA
ACATCTCGGCTATGGAGGCATCGACGGCAGCGCGCTACACACGCACCCCTGGTCAGAAACTGCGCCGGTTCAAGACCTTTTCCTACGCGGCCCGGTCGTG
GTCGAAACCGCGCCGCGTGATAGCCCGCGTCGAGGTTGGCCCAATGGGGCGCGATACCCGCTACATCGTCACCAATCTCGAGGGCGGTCGCGGCAAGCAT
CTCTACGAGAAGTTCTATTCCGCACGCGGTCAGGCGGAAAACCACATCAAGGCATGGAAGACCCATCTCCCATCAGACCGAACATCATGCTCGAAGGCGA
ACGCCAACCAGATGCGTCTGATGCTGCACAGTTGCGCCTACTGGCTCTGGTGGAAATTGCGCGCCGCCTGTCCAAGGAGATCCCCATGGCGCCGCGCCCA
ATTCGACACCCTGCGGCTGCATCTCGTCAAGCTGGCTGCAACCATCGTCGAGAAGAAGACCCGGATCAGCATCACACTGCCGACATCATGTCCGCGACAG
GGTCTCCTCCATCTTCTCTTCGACGCGCTCGCCCCACCGAAAGCAGCCTGACGCGAGCGGCCCGACAACCCCGAAACATCAATCCATATTACCCAACAAC
CACGTCAACGACCGGCCAGCAAACCGGACGCAAACATCGGATGCGCGCGACAGACCCGAGATCCGTGAAACCGGCCCCGGGAACACATTAATGCAGCTTC
ATGAATTATCCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 108 | 1451 | + | No |
Chemistry : DDE
ORF sequence :
MVQSTCSTPRLSPLNGKPILLGFDGADMSSDAGLTLLREIEREAGLAQRLADCLCDPRDPAKVQHSLCDIIRFRIMMIAAGYEDGNDANALRHDPSFRIA
LERGPETGAALCSQPTIPRMENLPDTRALIHMGREMVRFYCQSFARAPGRIVLDIDDTFDAVNGHQHLRLFNAFYDEFGFQPIVVFDGEGRLVGILLRPA
RRPKGAESAAHIRRLIRQIARHWPETEILLRADGHYCTPEVLDLCDRLGLSYVFGLSKNGRLAQNISAMEASTAARYTRTPGQKLRRFKTFSYAARSWSK
PRRVIARVEVGPMGRDTRYIVTNLEGGRGKHLYEKFYSARGQAENHIKAWKTHLPSDRTSCSKANANQMRLMLHSCAYWLWWKLRAACPRRSPWRRAQFD
TLRLHLVKLAATIVEKKTRISITLPTSCPRQGLLHLLFDALAPPKAA
LERGPETGAALCSQPTIPRMENLPDTRALIHMGREMVRFYCQSFARAPGRIVLDIDDTFDAVNGHQHLRLFNAFYDEFGFQPIVVFDGEGRLVGILLRPA
RRPKGAESAAHIRRLIRQIARHWPETEILLRADGHYCTPEVLDLCDRLGLSYVFGLSKNGRLAQNISAMEASTAARYTRTPGQKLRRFKTFSYAARSWSK
PRRVIARVEVGPMGRDTRYIVTNLEGGRGKHLYEKFYSARGQAENHIKAWKTHLPSDRTSCSKANANQMRLMLHSCAYWLWWKLRAACPRRSPWRRAQFD
TLRLHLVKLAATIVEKKTRISITLPTSCPRQGLLHLLFDALAPPKAA
Blast result :
Comments
ISRssp8 is 62% aa similar to ISSp1.
References
1] ISfinder annotation (2009)
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.