ISMpo3
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 1617 bp
Ends
IR Length : 26/33
IRL : CCCGTCTTATTCACGAGGACGGTGGATCTGGGGTGGCGAGCGTAGCATAA
IRR : CCCGTCTTATTCACCGGGCAGTGGTTTGCGGCGTGTTTTGGGCTGATGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCCGGGCCAG | CTAG | AGCTTGCGCA | 4 |
| ACACGCAGAC | CTAG | GGCCTTGCGG | 4 |
| AGGCCGGGAA | CTAA | GGGCATTTTC | 4 |
| AGAGCCCTTC | CTAG | CGCCTAGTGT | 4 |
| GCAGCCCTAA | CTAGGTAGGG | 0 | |
| ATGCGGGTGT | CTAG | GAAATGCAGT | 4 |
| ATCGTGCTAG | CTAAGATCAT | 0 | |
| GCGAGTACAT | CTAG | ACCATCTGCG | 4 |
| CACTGTTCGT | CTAG | ACATCCGTGT | 4 |
| CACGGATATT | CTAA | CGCATCACAC | 4 |
| TCCGGCTCCT | TTAG | GAGCGCCACA | 4 |
| GACGGGGGGT | CTAG | CAGGTATCGA | 4 |
| TCCGCCTGAT | CTAG | GCGGAGGAAC | 4 |
| CGCTGACGCA | CTAG | ATCGGCAAGG | 4 |
| ATCGCCACAC | CTAG | GGTCGAGACT | 4 |
DNA sequence
CCCGTCTTATTCACGAGGACGGTGGATCTGGGGTGGCGAGCGTAGCATAAAGCATTGATGTAGCTTAGAGATTGGGTGCTGACGCCAAGCCTTCAGATCG
CACCGAGCCTGCCACGCCCGCCATGTCCGATCCTACGTGTCTCCCGTTCGCGTTTCCATCCGTTCGGGGCAAGAAGCTCACAGCCGCCTTCGACGGCGGA
CGCCTGACCTCGGATGGCGGCGTCCTGCTGCTCGCCCAGGCCGCCCGGCGGTTGGACATTGCCGACAAGCTCGCTGCTGTGATCCCGGACCGTCGTGACC
CCAGCCGGGTTCTGCATCCGTTGCCCGAGATCCTGCTGGCGCGCATCCTGGCGATTGCCTGCGGGTATGAGGATGCGGACGACCTCGACCACCTGCGCGC
CGACCCCGCCTTCAAGCTCGCCTGCGGCCGCCTGCCCGAGAGCGGGCACGACCTGATGAGCCAGCCCACCGTCTCGCGGCTGGAGAACACGCCGGGTCTG
CGCGACCTCATCCGGCTCGGGCGGGTGCTGGTCGACCTCTACTGCGCCAGCTACCCCGTCCCGCCCGACGCCGTCACCCTGGACATCGACGACACGTGCG
ACGTGGTGCACGGCCAGCAGCAACTGTCGCTGTTCAACGCTCATCACGATGAGCGCTGCTTTCTGCCGATCCACGTCTACGACACCGCCACCAGCCGCCC
GGTCGCGATGATCCTGCGGCCGGGCAAGACGCCCTCGGGCCGCGAAGTGCGTGGACATCTGCGCCGCCTCGTCCGGGCGATCCGCCGTCATTGGCCGAAC
ACCGCGATCACCATCCGGGGCGATGGCCATTACGGGCGGCCCGAGGCCATGGACTGGTGCGAGAACCATGGGGTCAGCTACGTCTTCGGCCTGAGCGGCA
CCAAAGCGCTGGCGGCCAAGGTGGAACAGACGGCCGATCACATCAGAGTTGTGCGAGCCATCGACAACGAGGACGCGGTGCGCGGCTTTGCCGAGACCCG
GCACGCGGCCAAATCCTGGCGGCAGGAGCGGCGCGTCGTCGCCCGTATCGAGGCGACCCGGCTCGGCCTCGACATCCGCTATGTCGTCACAAACATCACG
ACCGGCACGCCGGAATGGCTCTATGCCGACCTGTACTGTGCCCGCGGACAGGCCGAGAACCTGATCAAGCTGCACAAGAGCCAGCTCGCCTCCGACCGTA
CCTCGTGCCGGCATCCCGCCGCCAACCAGATGCGGCTCGTCCTGCACACGGCGGCCTACTGGCTGATGCTGAGCGTGCGTGAGGCCATCCCGAAGGCGCA
CCGCCTCGCCACGGCCGAGTTCGCCACGCTCCGGCTGCGCCTCCTGAAGCTCGGCGCCCGCATCCGCGAGACCGCCAGCCGGGTTCGCCTCGCCTTCGCC
GCCGCCTGTCCTGAGGCCGACCTACTGAGCCATCTCGCGGCCACGCTCGCCCCAGCACCTGGTTAAACCAAGGGGCCGTGATGCCCCCACAAACCCGCTC
CCGTCCCTCCAGTGCTGACAGAACGATCCAGGTCCACACGCGTCAGAACAGACGCCCGATCCCGCGCGCCATCAGCCCAAAACACGCCGCAAACCACTGC
CCGGTGAATAAGACGGG
CACCGAGCCTGCCACGCCCGCCATGTCCGATCCTACGTGTCTCCCGTTCGCGTTTCCATCCGTTCGGGGCAAGAAGCTCACAGCCGCCTTCGACGGCGGA
CGCCTGACCTCGGATGGCGGCGTCCTGCTGCTCGCCCAGGCCGCCCGGCGGTTGGACATTGCCGACAAGCTCGCTGCTGTGATCCCGGACCGTCGTGACC
CCAGCCGGGTTCTGCATCCGTTGCCCGAGATCCTGCTGGCGCGCATCCTGGCGATTGCCTGCGGGTATGAGGATGCGGACGACCTCGACCACCTGCGCGC
CGACCCCGCCTTCAAGCTCGCCTGCGGCCGCCTGCCCGAGAGCGGGCACGACCTGATGAGCCAGCCCACCGTCTCGCGGCTGGAGAACACGCCGGGTCTG
CGCGACCTCATCCGGCTCGGGCGGGTGCTGGTCGACCTCTACTGCGCCAGCTACCCCGTCCCGCCCGACGCCGTCACCCTGGACATCGACGACACGTGCG
ACGTGGTGCACGGCCAGCAGCAACTGTCGCTGTTCAACGCTCATCACGATGAGCGCTGCTTTCTGCCGATCCACGTCTACGACACCGCCACCAGCCGCCC
GGTCGCGATGATCCTGCGGCCGGGCAAGACGCCCTCGGGCCGCGAAGTGCGTGGACATCTGCGCCGCCTCGTCCGGGCGATCCGCCGTCATTGGCCGAAC
ACCGCGATCACCATCCGGGGCGATGGCCATTACGGGCGGCCCGAGGCCATGGACTGGTGCGAGAACCATGGGGTCAGCTACGTCTTCGGCCTGAGCGGCA
CCAAAGCGCTGGCGGCCAAGGTGGAACAGACGGCCGATCACATCAGAGTTGTGCGAGCCATCGACAACGAGGACGCGGTGCGCGGCTTTGCCGAGACCCG
GCACGCGGCCAAATCCTGGCGGCAGGAGCGGCGCGTCGTCGCCCGTATCGAGGCGACCCGGCTCGGCCTCGACATCCGCTATGTCGTCACAAACATCACG
ACCGGCACGCCGGAATGGCTCTATGCCGACCTGTACTGTGCCCGCGGACAGGCCGAGAACCTGATCAAGCTGCACAAGAGCCAGCTCGCCTCCGACCGTA
CCTCGTGCCGGCATCCCGCCGCCAACCAGATGCGGCTCGTCCTGCACACGGCGGCCTACTGGCTGATGCTGAGCGTGCGTGAGGCCATCCCGAAGGCGCA
CCGCCTCGCCACGGCCGAGTTCGCCACGCTCCGGCTGCGCCTCCTGAAGCTCGGCGCCCGCATCCGCGAGACCGCCAGCCGGGTTCGCCTCGCCTTCGCC
GCCGCCTGTCCTGAGGCCGACCTACTGAGCCATCTCGCGGCCACGCTCGCCCCAGCACCTGGTTAAACCAAGGGGCCGTGATGCCCCCACAAACCCGCTC
CCGTCCCTCCAGTGCTGACAGAACGATCCAGGTCCACACGCGTCAGAACAGACGCCCGATCCCGCGCGCCATCAGCCCAAAACACGCCGCAAACCACTGC
CCGGTGAATAAGACGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 123 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MSDPTCLPFAFPSVRGKKLTAAFDGGRLTSDGGVLLLAQAARRLDIADKLAAVIPDRRDPSRVLHPLPEILLARILAIACGYEDADDLDHLRADPAFKLA
CGRLPESGHDLMSQPTVSRLENTPGLRDLIRLGRVLVDLYCASYPVPPDAVTLDIDDTCDVVHGQQQLSLFNAHHDERCFLPIHVYDTATSRPVAMILRP
GKTPSGREVRGHLRRLVRAIRRHWPNTAITIRGDGHYGRPEAMDWCENHGVSYVFGLSGTKALAAKVEQTADHIRVVRAIDNEDAVRGFAETRHAAKSWR
QERRVVARIEATRLGLDIRYVVTNITTGTPEWLYADLYCARGQAENLIKLHKSQLASDRTSCRHPAANQMRLVLHTAAYWLMLSVREAIPKAHRLATAEF
ATLRLRLLKLGARIRETASRVRLAFAAACPEADLLSHLAATLAPAPG
CGRLPESGHDLMSQPTVSRLENTPGLRDLIRLGRVLVDLYCASYPVPPDAVTLDIDDTCDVVHGQQQLSLFNAHHDERCFLPIHVYDTATSRPVAMILRP
GKTPSGREVRGHLRRLVRAIRRHWPNTAITIRGDGHYGRPEAMDWCENHGVSYVFGLSGTKALAAKVEQTADHIRVVRAIDNEDAVRGFAETRHAAKSWR
QERRVVARIEATRLGLDIRYVVTNITTGTPEWLYADLYCARGQAENLIKLHKSQLASDRTSCRHPAANQMRLVLHTAAYWLMLSVREAIPKAHRLATAEF
ATLRLRLLKLGARIRETASRVRLAFAAACPEADLLSHLAATLAPAPG
Blast result :
Comments
ISMpo3 is 93% aa similar to ISMex4.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.