ISMesp2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008242 | ND | Mesorhizobium sp. | Mesorhizobium sp. BNC1 plasmid 1 |
DNA section
IS Length : 1618 bp
Ends
IR Length : 24/29
IRL : CCCGTCTTATTCATGACGGCGCGTTTGCGAGGCTGGCGGGTGTAGCATAA
IRR : CCCGTCCTATTCATGAGCACGGCTTTGCGGATGACGCAGATCGATGGTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAACAACCAT | CTAG | CCTCGGGCAA | 4 |
DNA sequence
CCCGTCTTATTCATGACGGCGCGTTTGCGAGGCTGGCGGGTGTAGCATAAGCCATTGATGTGGCGTAGGATTCGGTTGCTTAGGCCAGTCCTGCAGACAA
CATCTCGCGAGCCACACCCGCCATGATCGACGATACGCTGCTGCCGTTCTCTTTTCCAGCCGTTCGCGCCAAGAAGATCACGGCTGCCTTCGACGGCGGT
CGCATCACCTCGGATGCCGGGATCATGCTTTTGGCCGCCGCCGAGCGGCGCCTGAAGCTGGCCGAGAAGCTCGCTGCCGCCATCCGCGACCCGCGCGATC
CGGCGCGTGTCAGGCACAGCTTGACCGACATCCTGCGCGCCCGCATCTTCGCCATTGCCTGCGGCTACGAGGATGCCAACGACCTCGACCGCCTTCGCAA
CGATCCGGCCTTCAAGCTCGCCTGCGGTCGGCTGCCCGACAGCGGTCAGGATCTGTGCTCGCAGCCGACCTGCTCGCGTCTGGAGAACCTGCCCGACCTC
AGGACCGTCATCCGCCTCGGCCGGGTTCTGGTCGACCTGTGGCTGTCGAGCTACCCTGCGCCGCCGAAAAGCGTCACCCTCGACATCGACGACACGCTCG
ACGTCGTTCACGGCCATCAGCAACTCTCGCTCTTCAACGGCCACCACGACGAACGCTGCTTCCTGCCGATCCACATCTACGACGCCGCCACTGGACGCCC
GGTCGCCATGATCCTGCGTCCGGGCAAGACCCCGTCGGGCAAGGAGATCCGTGGTCATCTGCGCCGGCTCGCGCGGTGCATCCGTGCCCGCTGGCCGGAC
ACCCGCATCCTCGTGCGCGGTGACAGCCATTATGGCCGGGTCGAAGTCATGGCCTGGTGCGAGGAAAACGCGATCGACTACGTCTTCGGCCTTGCTGGCA
ACAAGGTCCTGAAGCGTCTCGTTGACGCGAGCGCCGACGACATCCGCACCCGCCGCGCGCTCGAGCAGAAGCCGGTGCTGCGGGGCTATGTCGAGACCCG
CTACGAGGCCAAATCCTGGAAGGCCGAGCGCCGCGTCGCGGCCCGCATCGAGGCGACCACGATGGGCCTCGACATCCGCTTCGTCGTCACCAACCTCGCC
AAAGGCTCCGCTGAGCACATCTACGACGTCGTCTACTGTGCGCGCGGCCAGGCCGAGAACCTGATCAAGATGCACAAGAGCCAACTCGCCTCCGATCGAA
CCTCCTGTCGCCGGGCCGTCGCCAACCAGATGCGCCTCGTTCTCCACACCGCCGCCTACTGGCTCATGCTCACGCTGCGCGAGGCGGTGCCCGCTACCCA
TCATCTTGGCAAAGCCGAGTTCGCCACGCTGCGGCTCAGGCTTCTCAAACTCGGCGCCCGTGTAACCGAAACCGTCTCGCGCATCCGATTGGCATTCGCC
GCCGCCTGTCCCGAGGCAAGTCTGTTCCGTTCCATTGCCGCCAAGCTGCAGCCGGCAGGACCTTGAGACGACCAGGGCGGAATGCCCCCGCAACCAAGCC
CGTCAACCTCCAGCGCGTTCAACAAGTCCAGCCTCGCCCGCGGTGAAAGAGACGCCTCGACTGCCCGCGCACCATCGATCTGCGTCATCCGCAAAGCCGT
GCTCATGAATAGGACGGG
CATCTCGCGAGCCACACCCGCCATGATCGACGATACGCTGCTGCCGTTCTCTTTTCCAGCCGTTCGCGCCAAGAAGATCACGGCTGCCTTCGACGGCGGT
CGCATCACCTCGGATGCCGGGATCATGCTTTTGGCCGCCGCCGAGCGGCGCCTGAAGCTGGCCGAGAAGCTCGCTGCCGCCATCCGCGACCCGCGCGATC
CGGCGCGTGTCAGGCACAGCTTGACCGACATCCTGCGCGCCCGCATCTTCGCCATTGCCTGCGGCTACGAGGATGCCAACGACCTCGACCGCCTTCGCAA
CGATCCGGCCTTCAAGCTCGCCTGCGGTCGGCTGCCCGACAGCGGTCAGGATCTGTGCTCGCAGCCGACCTGCTCGCGTCTGGAGAACCTGCCCGACCTC
AGGACCGTCATCCGCCTCGGCCGGGTTCTGGTCGACCTGTGGCTGTCGAGCTACCCTGCGCCGCCGAAAAGCGTCACCCTCGACATCGACGACACGCTCG
ACGTCGTTCACGGCCATCAGCAACTCTCGCTCTTCAACGGCCACCACGACGAACGCTGCTTCCTGCCGATCCACATCTACGACGCCGCCACTGGACGCCC
GGTCGCCATGATCCTGCGTCCGGGCAAGACCCCGTCGGGCAAGGAGATCCGTGGTCATCTGCGCCGGCTCGCGCGGTGCATCCGTGCCCGCTGGCCGGAC
ACCCGCATCCTCGTGCGCGGTGACAGCCATTATGGCCGGGTCGAAGTCATGGCCTGGTGCGAGGAAAACGCGATCGACTACGTCTTCGGCCTTGCTGGCA
ACAAGGTCCTGAAGCGTCTCGTTGACGCGAGCGCCGACGACATCCGCACCCGCCGCGCGCTCGAGCAGAAGCCGGTGCTGCGGGGCTATGTCGAGACCCG
CTACGAGGCCAAATCCTGGAAGGCCGAGCGCCGCGTCGCGGCCCGCATCGAGGCGACCACGATGGGCCTCGACATCCGCTTCGTCGTCACCAACCTCGCC
AAAGGCTCCGCTGAGCACATCTACGACGTCGTCTACTGTGCGCGCGGCCAGGCCGAGAACCTGATCAAGATGCACAAGAGCCAACTCGCCTCCGATCGAA
CCTCCTGTCGCCGGGCCGTCGCCAACCAGATGCGCCTCGTTCTCCACACCGCCGCCTACTGGCTCATGCTCACGCTGCGCGAGGCGGTGCCCGCTACCCA
TCATCTTGGCAAAGCCGAGTTCGCCACGCTGCGGCTCAGGCTTCTCAAACTCGGCGCCCGTGTAACCGAAACCGTCTCGCGCATCCGATTGGCATTCGCC
GCCGCCTGTCCCGAGGCAAGTCTGTTCCGTTCCATTGCCGCCAAGCTGCAGCCGGCAGGACCTTGAGACGACCAGGGCGGAATGCCCCCGCAACCAAGCC
CGTCAACCTCCAGCGCGTTCAACAAGTCCAGCCTCGCCCGCGGTGAAAGAGACGCCTCGACTGCCCGCGCACCATCGATCTGCGTCATCCGCAAAGCCGT
GCTCATGAATAGGACGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 123 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MIDDTLLPFSFPAVRAKKITAAFDGGRITSDAGIMLLAAAERRLKLAEKLAAAIRDPRDPARVRHSLTDILRARIFAIACGYEDANDLDRLRNDPAFKLA
CGRLPDSGQDLCSQPTCSRLENLPDLRTVIRLGRVLVDLWLSSYPAPPKSVTLDIDDTLDVVHGHQQLSLFNGHHDERCFLPIHIYDAATGRPVAMILRP
GKTPSGKEIRGHLRRLARCIRARWPDTRILVRGDSHYGRVEVMAWCEENAIDYVFGLAGNKVLKRLVDASADDIRTRRALEQKPVLRGYVETRYEAKSWK
AERRVAARIEATTMGLDIRFVVTNLAKGSAEHIYDVVYCARGQAENLIKMHKSQLASDRTSCRRAVANQMRLVLHTAAYWLMLTLREAVPATHHLGKAEF
ATLRLRLLKLGARVTETVSRIRLAFAAACPEASLFRSIAAKLQPAGP
CGRLPDSGQDLCSQPTCSRLENLPDLRTVIRLGRVLVDLWLSSYPAPPKSVTLDIDDTLDVVHGHQQLSLFNGHHDERCFLPIHIYDAATGRPVAMILRP
GKTPSGKEIRGHLRRLARCIRARWPDTRILVRGDSHYGRVEVMAWCEENAIDYVFGLAGNKVLKRLVDASADDIRTRRALEQKPVLRGYVETRYEAKSWK
AERRVAARIEATTMGLDIRFVVTNLAKGSAEHIYDVVYCARGQAENLIKMHKSQLASDRTSCRRAVANQMRLVLHTAAYWLMLTLREAVPATHHLGKAEF
ATLRLRLLKLGARVTETVSRIRLAFAAACPEASLFRSIAAKLQPAGP
Blast result :
Comments
ISMesp2 is 80% aa similar to ISMex4.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.(2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.(2006) Direct submission GenBank.