ISSfu1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008554 | ND | Syntrophobacter fumaroxidans | Syntrophobacter fumaroxidans MPOB |
DNA section
IS Length : 1666 bp
Ends
IR Length : 20/32
IRL : CCCGGAAAATTCATAAATAGTGCTTGAAAAAGAAACGGACATCCTGTAAC
IRR : CCCGCATTATTCACGAGGCTTGGCGAGAAAGCCGTTGAATGTGACCATCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AACAACCATA | TTAG | AGAAGAATAT | 4 |
| CGAAAGTGGC | TTAG | AAAATTAAGG | 4 |
| AATAAACGTA | GTAG | GTGATGTCGT | 4 |
| GTGCGGGAAA | CTAG | GCGCTGTGTC | 4 |
| AACTTGTACT | TTAA | AGGACTTTTA | 4 |
DNA sequence
CCCGGAAAATTCATAAATAGTGCTTGAAAAAGAAACGGACATCCTGTAACGTGTTGACTTGACAAGAGAAAACACGAAACAAAAGGAATGTCCGTTGAAT
ACAGTCTGTCATAAACAACTCTCTTTTGCAAACCTTGATTCGCGCTCTGTTGTGGCCGAGTTTTCGGCCGGCCCAATGACCTCGGACGGCGGCTCATTGC
TGCTGCGGGAAATCGATCGCGCAACGGATCTTTCTTCCTCCATGAGCCGGGCACTTTCCGACCGTCGCGATCAGGCCAAAGTGCACCATGGCCAGGAGGA
ACTCTTGCGCCAACGCCTTTTCGCCATTGCGATGGGCTACGAAGACGGCAACGATCATCAATCCCTGCGCTTTGATCCGGGGCTCAAAACCGCCGTTGGC
AGGTTGCCCGAAACCGATCCGGCACTGGCTTCCCAACCGACGCTCTCACGTTTCGAAAACCGTGTAGGGAACTGTGAGCTTCGCCGCCTGAGCGACGCCC
TGATTGACGCCTATGTGGCCGCACACCCGGCTCCGCGCAAGGTAATCGTGCTCGATATGGACGCAACGGATGATCCCGTTCACGGCTTGCAGCAACTCTC
CTTCTTCCACGGCTACTACGATCAGTACATGCTGCATCCGCTGCTGATCTTTGACGGGCTCACCGGTTTTCCGGTAGCCGCGGTGCTGCGCGCGGGCAAC
GCACACGCGTCCAAAGGAGCGGCGGCAATCTTGAAGCGCATCATCCGCCGCCTCAAACATGCCTATCCGGGCGCCACTATTCTGGTGCGCGCCGATGCAG
GCTTTGCCGTACCGGCCATCTACAGGCTCCTTGAGCGCGAGAAGGTCAAATACACGATCGGCCTGATCACCAATGACCGTCTTCGCAAACGTGCCGCCAA
CCTGGTGATCAAAGCCGAGAGGCAGTTCGCCAAAACCGGAGCGAAGCAAAGACTCTTTGGCAGCTTTTACCATCGAGCCGGATCCTGGCAACGATCACGT
CGGGTTATTGCCAAGGTCGAGCGACTCTCCCGGGGCCTCAACACCCGCTTTGTGGTGACCAACATCCTTGAATCCGCCGCAGGGATTTATGACGGCATCT
ACACCGGCCGGGGCGATGCCGAGAACCGGATCAAGGAGCTCAAGGTTCATCTCAAAGCCGATCGGCTGAGCTGCACCCGGTTCCAGGCCAACCAGTTTCG
GCTGCTGCTGCACACCTTCGCCTTCGTTCTGTTTTGGCACCTGCGCCGGAGCCTTGCCGGAACGGAACTGGCTGCCGCCACAGTCGACACCCTCAAGCTC
AAACTGCTCAAAGTCGGCGCACGGGTGGTCCAGAGCGTGCGGCGCATCCTCTTTACCATGCCGCGCGCCTATCCCTATCAACGCCTCTTTGCCACCGCAC
TGCAAAATATTCGGCAAATGCCGCTCCGATGCTGAAGGCACGGCCTCCCGTACCGAAGCCTGATCACCATGAAAACCGATGTCAACACTACAGGTGCGCC
CAATATCGGGCTGTCGGGCACAAAAATATGAGGCGAAAACCGAAACACAGGATTCGGGACCGATTCCAGTGCCTCTCAACAGCACGGACCACCGAAAAAT
CCGTCTCCGTCACTCATGATGGTCACATTCAACGGCTTTCTCGCCAAGCCTCGTGAATAATGCGGG
ACAGTCTGTCATAAACAACTCTCTTTTGCAAACCTTGATTCGCGCTCTGTTGTGGCCGAGTTTTCGGCCGGCCCAATGACCTCGGACGGCGGCTCATTGC
TGCTGCGGGAAATCGATCGCGCAACGGATCTTTCTTCCTCCATGAGCCGGGCACTTTCCGACCGTCGCGATCAGGCCAAAGTGCACCATGGCCAGGAGGA
ACTCTTGCGCCAACGCCTTTTCGCCATTGCGATGGGCTACGAAGACGGCAACGATCATCAATCCCTGCGCTTTGATCCGGGGCTCAAAACCGCCGTTGGC
AGGTTGCCCGAAACCGATCCGGCACTGGCTTCCCAACCGACGCTCTCACGTTTCGAAAACCGTGTAGGGAACTGTGAGCTTCGCCGCCTGAGCGACGCCC
TGATTGACGCCTATGTGGCCGCACACCCGGCTCCGCGCAAGGTAATCGTGCTCGATATGGACGCAACGGATGATCCCGTTCACGGCTTGCAGCAACTCTC
CTTCTTCCACGGCTACTACGATCAGTACATGCTGCATCCGCTGCTGATCTTTGACGGGCTCACCGGTTTTCCGGTAGCCGCGGTGCTGCGCGCGGGCAAC
GCACACGCGTCCAAAGGAGCGGCGGCAATCTTGAAGCGCATCATCCGCCGCCTCAAACATGCCTATCCGGGCGCCACTATTCTGGTGCGCGCCGATGCAG
GCTTTGCCGTACCGGCCATCTACAGGCTCCTTGAGCGCGAGAAGGTCAAATACACGATCGGCCTGATCACCAATGACCGTCTTCGCAAACGTGCCGCCAA
CCTGGTGATCAAAGCCGAGAGGCAGTTCGCCAAAACCGGAGCGAAGCAAAGACTCTTTGGCAGCTTTTACCATCGAGCCGGATCCTGGCAACGATCACGT
CGGGTTATTGCCAAGGTCGAGCGACTCTCCCGGGGCCTCAACACCCGCTTTGTGGTGACCAACATCCTTGAATCCGCCGCAGGGATTTATGACGGCATCT
ACACCGGCCGGGGCGATGCCGAGAACCGGATCAAGGAGCTCAAGGTTCATCTCAAAGCCGATCGGCTGAGCTGCACCCGGTTCCAGGCCAACCAGTTTCG
GCTGCTGCTGCACACCTTCGCCTTCGTTCTGTTTTGGCACCTGCGCCGGAGCCTTGCCGGAACGGAACTGGCTGCCGCCACAGTCGACACCCTCAAGCTC
AAACTGCTCAAAGTCGGCGCACGGGTGGTCCAGAGCGTGCGGCGCATCCTCTTTACCATGCCGCGCGCCTATCCCTATCAACGCCTCTTTGCCACCGCAC
TGCAAAATATTCGGCAAATGCCGCTCCGATGCTGAAGGCACGGCCTCCCGTACCGAAGCCTGATCACCATGAAAACCGATGTCAACACTACAGGTGCGCC
CAATATCGGGCTGTCGGGCACAAAAATATGAGGCGAAAACCGAAACACAGGATTCGGGACCGATTCCAGTGCCTCTCAACAGCACGGACCACCGAAAAAT
CCGTCTCCGTCACTCATGATGGTCACATTCAACGGCTTTCTCGCCAAGCCTCGTGAATAATGCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1194 bp | 397 aa | 242 | 1435 | + | No |
Chemistry : DDE
ORF sequence :
MSRALSDRRDQAKVHHGQEELLRQRLFAIAMGYEDGNDHQSLRFDPGLKTAVGRLPETDPALASQPTLSRFENRVGNCELRRLSDALIDAYVAAHPAPRK
VIVLDMDATDDPVHGLQQLSFFHGYYDQYMLHPLLIFDGLTGFPVAAVLRAGNAHASKGAAAILKRIIRRLKHAYPGATILVRADAGFAVPAIYRLLERE
KVKYTIGLITNDRLRKRAANLVIKAERQFAKTGAKQRLFGSFYHRAGSWQRSRRVIAKVERLSRGLNTRFVVTNILESAAGIYDGIYTGRGDAENRIKEL
KVHLKADRLSCTRFQANQFRLLLHTFAFVLFWHLRRSLAGTELAAATVDTLKLKLLKVGARVVQSVRRILFTMPRAYPYQRLFATALQNIRQMPLRC
VIVLDMDATDDPVHGLQQLSFFHGYYDQYMLHPLLIFDGLTGFPVAAVLRAGNAHASKGAAAILKRIIRRLKHAYPGATILVRADAGFAVPAIYRLLERE
KVKYTIGLITNDRLRKRAANLVIKAERQFAKTGAKQRLFGSFYHRAGSWQRSRRVIAKVERLSRGLNTRFVVTNILESAAGIYDGIYTGRGDAENRIKEL
KVHLKADRLSCTRFQANQFRLLLHTFAFVLFWHLRRSLAGTELAAATVDTLKLKLLKVGARVVQSVRRILFTMPRAYPYQRLFATALQNIRQMPLRC
Blast result :
Comments
ISSfu1 is 59% aa similar to ISSp1.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and Richardson,P. (2006) Direct submission GenBank.