ISMaq3

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008740 ND Marinobacter aquaeolei
Marinobacter aquaeolei VT8
DNA section
IS Length : 1560 bp

Ends


IR Length : 15/19

IRL : CCCGAATTTCTCATGAGGGGATAAAAGAAAGCGGCTGAAAGTGTTAAAAT
IRR : CCCGGATTTCTCATAGTGCTCCAACAACCTTCGCAGACCAAGCCTGGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCAGACTCCTAGAGCATCAGGG4

DNA sequence

CCCGAATTTCTCATGAGGGGATAAAAGAAAGCGGCTGAAAGTGTTAAAATTTCAGGACCTTACACCATCAATCAACACCAACAACCGCTATCCAAAATGG
TACCTCAAAAACTGACCTTCTCGCCACTTTCCCGCCGCCAGATTGAAACCGACTTCTCCGGAGGCCATATCACCTCCGATGCCGGCTTGCTGTTACTGCG
CGAAGTCGACAAACAACACCGGTTAACCCAACGGCTGGCCGAGACTCTGACCGACCAGCGGGATCCCCGGATGATTCGTCATGAGCTCAAGTCCCTGGTC
CGGCAACGGGTCTACGGTGTGGCCGGTGGCTACGAAGATCTGAATGATCATGAAGCGCTTCGCTTTGATCAGGCACTACAAACCGCCACGGGGAATGCCT
CGACTCTGGCCGGCAAGTCCACGCTTTGTCGAATGGAGCAGGCGATGGATCGGCAAACCATTGTCAAAGCGCATGAGTTGCTCTGGCACCACTTTATCGA
GCAGCATGAGAAGCCGCCCAAGGAAATCGTGCTGGATTTTGACGGCACCGATATTCCGGTGCACGGCGACCAGCCGGGTAAGTTCTTTAACCGGTATTAC
GACCATCACTGCTACTTCCCGCTTTACGTCTTCTGCGGTAGGCACTTGCTGGTGAGCTATCTGCGCACCAGCAATCGAGGTGATGCCCGGCACAGCTGGG
CCATTCTGGCGCTGCTGGTGCGATTTATTCGCGAGTATTGGCCACAGACCCGGATCGTGTTCCGGGGCGACTCCCACTTCAGCAAGCCCCGACTGCTGGC
CTGGTGCGATCGCAACCAGGTGGATTACATCGTAGGCATGGCCCGCAACCAGCGGCTGGAGGCGCTTGCCGCCCCAGCCATGGACAAAGTCCGGACCTAC
TACGAGGCTCATGGCCATAAGCTCGCCAGCACCTTCCGCTTCCGCTACAAAGCCCGAAGCTGGCATAAGCCACGCTGGGTGGTTGCGCGCCTGGAATATG
GCCCTCAAGGCCCGAACCCCCGGTTCGTTATCAGCTCCCGCTACGATGACGGATTCAAGCTCTACTACGAACAGTATTGCGCACGGGGTGATATGGAGAA
CCGGATCAAGGATCAACAACTGGATCTGTTTGCCGGTCGCACCTCCAGCACACACTGGTGGACCAACCAGTGGCGGCTGATCTTATCCGGCTTCGCCTAC
ACCCTGTTCGAGCGTTTGCGGGTGCATCTGAAAAACACGCCCTTCGAACGTATGAGTGCCGGCACCTTGCGCTTGAAGCTGATCAAGGTTGGCGCAGTCA
TCATCCGCAACACCCGCCGAATACGGGTGTTGATGAGTGATAGCTATCCACACAAGAACGATCTCTCAGCACTGGTTCAGCGCTTGGTGCCCCAGTAGAT
AATCGGGCTCCCCCGGCCCGATACCAATGGGGGAAAGGGGGAGTTGTGCCTGAATGCCGGAAACTGGCTAAATAATCGCCAACTTCGACCATGACCACTC
GGATCTGGCACTACCAGGCTTGGTCTGCGAAGGTTGTTGGAGCACTATGAGAAATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa971398+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVPQKLTFSPLSRRQIETDFSGGHITSDAGLLLLREVDKQHRLTQRLAETLTDQRDPRMIRHELKSLVRQRVYGVAGGYEDLNDHEALRFDQALQTATGN
ASTLAGKSTLCRMEQAMDRQTIVKAHELLWHHFIEQHEKPPKEIVLDFDGTDIPVHGDQPGKFFNRYYDHHCYFPLYVFCGRHLLVSYLRTSNRGDARHS
WAILALLVRFIREYWPQTRIVFRGDSHFSKPRLLAWCDRNQVDYIVGMARNQRLEALAAPAMDKVRTYYEAHGHKLASTFRFRYKARSWHKPRWVVARLE
YGPQGPNPRFVISSRYDDGFKLYYEQYCARGDMENRIKDQQLDLFAGRTSSTHWWTNQWRLILSGFAYTLFERLRVHLKNTPFERMSAGTLRLKLIKVGA
VIIRNTRRIRVLMSDSYPHKNDLSALVQRLVPQ

 

Blast result :
Comments
ISMaq3 is 61% aa similar to ISThsp13.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2007) Direct submission GenBank.