ISRsp7
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY316747 | ND | Rhizobium sp. | Rhizobium sp. NGR234 megaplasmid 2 |
DNA section
IS Length : 2024 bp
Ends
IR Length : 11/15
IRL : CCAGCGGTCTCAGCGCAGTGGCGAAGTCCGCCCGGAGTCCATAGGCCGGC
IRR : CAAGCGGTCTATCCGGCCAATCGCCATATTGCGGTAAAGGTCCGACGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTCGTGATG | CAATTGTATC | 0 |
DNA sequence
CCAGCGGTCTCAGCGCAGTGGCGAAGTCCGCCCGGAGTCCATAGGCCGGCTCACTGCACGTTGATGTTTTGGTTGGTGGTAAGCGCCCGGTTTCCGGCGC
GATCATGTCCGGAAAATAGCGACGCTGCGGTGAGCCTTCCGGTGGATACTTTAGCCTGAATATCTCAAAGTAAGAGGTGCATCGGGCCCGCGAATCTGAG
AAACTTCTTTTGCTACAAAGGGTTATCAGATTCGTTGAGGGGGTCCGATGCAAACACACTGTATCGCCGAGCAGCTCGAATTTGAAGGCTTCGACGGTCA
CAAAGTGGTCGCTGGTTTCGACGGCGGAGCGATCACCTCGGATGCCGGCGCCCTGCTGCTTCGCCATGTCGATGGGGTCATCGGACTGTTCGACCGGGTG
GCCGCTTGCTTCGTTGATGACCGCGATCCGACGTGCACGGTCCACAGCGTGCGCACGCTGGTCGGGCAGCGCGTTGCGGCGATCGCGCTGGGCTACGAGG
ATGTCGATGACCACGACAGGCTGCGCCACGACCCGGTGCTCGCGCTTCTGTCGGAGCGGCTGACGCCGAAGCGGCAAGACTGTGCGGTGCTTGCCGGCAA
ATCCACCTTGAACCGGCTGGAGCACGGCCGTCTCGGCCAGCCGACGCGCTATCACAAGATCGCTTACGACAGGCAAGCGCTGGAAGCGCTGTTCATCGAG
CTGTTCCTGGACGCGCACGACAGCCCGCCTGAGGAAATCGTGCTCGATCTCGACGCCACCGATGATCCGCTGCACGGTCACCAGGAGGGTCGGTTCTTTC
ACGGCTATTACAACTGCTATTGCTATCTGCCGCTGTACATCTTCTGCGGCCGCCACCTGCTTTCGGCCAAGCTACGGCGTTCGAACATCGACGCCAGCGC
AGGCTCGGTCGCCGAAATCGATCGTATCATCGGGCAGATCCGCCAAAGCTGGCCAAACGTGCGCATCATCCTGCGCGCCGATTCCGGCTTCGCCCGCGAC
GAACTGATGGACTGGTGCGAGACCAACAAGGTCGACTATGTCTTTGGCCTTGCTCGCAACCCGCGGCTGGAAAGGCAAATCGCGCCGGCCATGGAGGAAG
CAAGCCTGTTATCCCAGGCAAGCGCCCAGGCGACCCGCGTCTTCCGCGACTTCCTGTGGTCGACCAAGGACAGCTGGACACGACGACGGCGGGTCGTTGG
AAAAGCGGAATGGACGCTGCTGGGCGCCAATCCGCGCTTCATCGTCACCTCCCTTAAGTCAGAGCGCTGGGCGGCACAGACGCTTTACGAGGATCTCTAC
TGCGCCCGCGGTGACATGGAGAACCGCATCAAAGAATGCCAGCTCGATCTCTACGCCGACCGCACCAGCGCCCACACCATGCACGCCAATCAACTGCGCC
TCTGGTTCGCCTCGTTGGCCTACGTGCTGATCTGCGCCCTGCGCCGCCTTGGCCTTGCCCATACGCGGCTCGCCGAGGCGACCTGCGGCACCATCCGGCT
GAAGCTGTTAAAGATCGGCGCCCAGGTCCGCGTCTCGGTGCGTCGCATCAAAATCGCGATGGCATCCGCCTGTCCCTATGCCGACGAATTTGCACTGGCA
CACGCCCGAATACGTGCCGCGGCCCGCTGATGCCGCCGGCCTGAAACCCTTCCGCAACCAGAACAGGAGACATCGCCGAACCCAGACCCGCCGCTCACAG
TGGCGCCGACTCCGTTCGTCTTCGAAGCCGGAGCGCCAAACAGGCGTCCCGGCGGGCCGAGTTGCGCCACCGGCGCTAAAGGCGGTGAGAGAAGCGGGTT
AGGGCAGCACCAGACATCGCCGCGGCCATCAGAGAGCGGCTGCAACGGGTCGAGCGTTGGTCTTCAGCGGGGCGTCCGTGAGAGCCTCCTGTCGCTTCTG
CTCATTCTCACATTCATCCGGAGCGCGGGTTTCGCCTCGGCTACGGCCGCAGTTTGCCTGCCAGAAACGAGACGAAGCGTCGGACCTTTACCGCAATATG
GCGATTGGCCGGATAGACCGCTTG
GATCATGTCCGGAAAATAGCGACGCTGCGGTGAGCCTTCCGGTGGATACTTTAGCCTGAATATCTCAAAGTAAGAGGTGCATCGGGCCCGCGAATCTGAG
AAACTTCTTTTGCTACAAAGGGTTATCAGATTCGTTGAGGGGGTCCGATGCAAACACACTGTATCGCCGAGCAGCTCGAATTTGAAGGCTTCGACGGTCA
CAAAGTGGTCGCTGGTTTCGACGGCGGAGCGATCACCTCGGATGCCGGCGCCCTGCTGCTTCGCCATGTCGATGGGGTCATCGGACTGTTCGACCGGGTG
GCCGCTTGCTTCGTTGATGACCGCGATCCGACGTGCACGGTCCACAGCGTGCGCACGCTGGTCGGGCAGCGCGTTGCGGCGATCGCGCTGGGCTACGAGG
ATGTCGATGACCACGACAGGCTGCGCCACGACCCGGTGCTCGCGCTTCTGTCGGAGCGGCTGACGCCGAAGCGGCAAGACTGTGCGGTGCTTGCCGGCAA
ATCCACCTTGAACCGGCTGGAGCACGGCCGTCTCGGCCAGCCGACGCGCTATCACAAGATCGCTTACGACAGGCAAGCGCTGGAAGCGCTGTTCATCGAG
CTGTTCCTGGACGCGCACGACAGCCCGCCTGAGGAAATCGTGCTCGATCTCGACGCCACCGATGATCCGCTGCACGGTCACCAGGAGGGTCGGTTCTTTC
ACGGCTATTACAACTGCTATTGCTATCTGCCGCTGTACATCTTCTGCGGCCGCCACCTGCTTTCGGCCAAGCTACGGCGTTCGAACATCGACGCCAGCGC
AGGCTCGGTCGCCGAAATCGATCGTATCATCGGGCAGATCCGCCAAAGCTGGCCAAACGTGCGCATCATCCTGCGCGCCGATTCCGGCTTCGCCCGCGAC
GAACTGATGGACTGGTGCGAGACCAACAAGGTCGACTATGTCTTTGGCCTTGCTCGCAACCCGCGGCTGGAAAGGCAAATCGCGCCGGCCATGGAGGAAG
CAAGCCTGTTATCCCAGGCAAGCGCCCAGGCGACCCGCGTCTTCCGCGACTTCCTGTGGTCGACCAAGGACAGCTGGACACGACGACGGCGGGTCGTTGG
AAAAGCGGAATGGACGCTGCTGGGCGCCAATCCGCGCTTCATCGTCACCTCCCTTAAGTCAGAGCGCTGGGCGGCACAGACGCTTTACGAGGATCTCTAC
TGCGCCCGCGGTGACATGGAGAACCGCATCAAAGAATGCCAGCTCGATCTCTACGCCGACCGCACCAGCGCCCACACCATGCACGCCAATCAACTGCGCC
TCTGGTTCGCCTCGTTGGCCTACGTGCTGATCTGCGCCCTGCGCCGCCTTGGCCTTGCCCATACGCGGCTCGCCGAGGCGACCTGCGGCACCATCCGGCT
GAAGCTGTTAAAGATCGGCGCCCAGGTCCGCGTCTCGGTGCGTCGCATCAAAATCGCGATGGCATCCGCCTGTCCCTATGCCGACGAATTTGCACTGGCA
CACGCCCGAATACGTGCCGCGGCCCGCTGATGCCGCCGGCCTGAAACCCTTCCGCAACCAGAACAGGAGACATCGCCGAACCCAGACCCGCCGCTCACAG
TGGCGCCGACTCCGTTCGTCTTCGAAGCCGGAGCGCCAAACAGGCGTCCCGGCGGGCCGAGTTGCGCCACCGGCGCTAAAGGCGGTGAGAGAAGCGGGTT
AGGGCAGCACCAGACATCGCCGCGGCCATCAGAGAGCGGCTGCAACGGGTCGAGCGTTGGTCTTCAGCGGGGCGTCCGTGAGAGCCTCCTGTCGCTTCTG
CTCATTCTCACATTCATCCGGAGCGCGGGTTTCGCCTCGGCTACGGCCGCAGTTTGCCTGCCAGAAACGAGACGAAGCGTCGGACCTTTACCGCAATATG
GCGATTGGCCGGATAGACCGCTTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1383 bp | 460 aa | 248 | 1630 | + | No |
Chemistry : DDE
ORF sequence :
MQTHCIAEQLEFEGFDGHKVVAGFDGGAITSDAGALLLRHVDGVIGLFDRVAACFVDDRDPTCTVHSVRTLVGQRVAAIALGYEDVDDHDRLRHDPVLAL
LSERLTPKRQDCAVLAGKSTLNRLEHGRLGQPTRYHKIAYDRQALEALFIELFLDAHDSPPEEIVLDLDATDDPLHGHQEGRFFHGYYNCYCYLPLYIFC
GRHLLSAKLRRSNIDASAGSVAEIDRIIGQIRQSWPNVRIILRADSGFARDELMDWCETNKVDYVFGLARNPRLERQIAPAMEEASLLSQASAQATRVFR
DFLWSTKDSWTRRRRVVGKAEWTLLGANPRFIVTSLKSERWAAQTLYEDLYCARGDMENRIKECQLDLYADRTSAHTMHANQLRLWFASLAYVLICALRR
LGLAHTRLAEATCGTIRLKLLKIGAQVRVSVRRIKIAMASACPYADEFALAHARIRAAAR
LSERLTPKRQDCAVLAGKSTLNRLEHGRLGQPTRYHKIAYDRQALEALFIELFLDAHDSPPEEIVLDLDATDDPLHGHQEGRFFHGYYNCYCYLPLYIFC
GRHLLSAKLRRSNIDASAGSVAEIDRIIGQIRQSWPNVRIILRADSGFARDELMDWCETNKVDYVFGLARNPRLERQIAPAMEEASLLSQASAQATRVFR
DFLWSTKDSWTRRRRVVGKAEWTLLGANPRFIVTSLKSERWAAQTLYEDLYCARGDMENRIKECQLDLYADRTSAHTMHANQLRLWFASLAYVLICALRR
LGLAHTRLAEATCGTIRLKLLKIGAQVRVSVRRIKIAMASACPYADEFALAHARIRAAAR
Blast result :
Comments
ISRsp7 is 68% aa similar to IS1380.
References
1] ISfinder annotation (2009)
2] Broughton,W.J., Perret,X., Staehelin,C., Schmitz,R.A., Raasch,C., Liesegang,H., Gottschalk,G. and Streit,W.R. (2003) Direct submission GenBank.
2] Broughton,W.J., Perret,X., Staehelin,C., Schmitz,R.A., Raasch,C., Liesegang,H., Gottschalk,G. and Streit,W.R. (2003) Direct submission GenBank.