ISRsp7

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY316747 ND Rhizobium sp.
Rhizobium sp. NGR234 megaplasmid 2
DNA section
IS Length : 2024 bp

Ends


IR Length : 11/15

IRL : CCAGCGGTCTCAGCGCAGTGGCGAAGTCCGCCCGGAGTCCATAGGCCGGC
IRR : CAAGCGGTCTATCCGGCCAATCGCCATATTGCGGTAAAGGTCCGACGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATTCGTGATGCAATTGTATC0

DNA sequence

CCAGCGGTCTCAGCGCAGTGGCGAAGTCCGCCCGGAGTCCATAGGCCGGCTCACTGCACGTTGATGTTTTGGTTGGTGGTAAGCGCCCGGTTTCCGGCGC
GATCATGTCCGGAAAATAGCGACGCTGCGGTGAGCCTTCCGGTGGATACTTTAGCCTGAATATCTCAAAGTAAGAGGTGCATCGGGCCCGCGAATCTGAG
AAACTTCTTTTGCTACAAAGGGTTATCAGATTCGTTGAGGGGGTCCGATGCAAACACACTGTATCGCCGAGCAGCTCGAATTTGAAGGCTTCGACGGTCA
CAAAGTGGTCGCTGGTTTCGACGGCGGAGCGATCACCTCGGATGCCGGCGCCCTGCTGCTTCGCCATGTCGATGGGGTCATCGGACTGTTCGACCGGGTG
GCCGCTTGCTTCGTTGATGACCGCGATCCGACGTGCACGGTCCACAGCGTGCGCACGCTGGTCGGGCAGCGCGTTGCGGCGATCGCGCTGGGCTACGAGG
ATGTCGATGACCACGACAGGCTGCGCCACGACCCGGTGCTCGCGCTTCTGTCGGAGCGGCTGACGCCGAAGCGGCAAGACTGTGCGGTGCTTGCCGGCAA
ATCCACCTTGAACCGGCTGGAGCACGGCCGTCTCGGCCAGCCGACGCGCTATCACAAGATCGCTTACGACAGGCAAGCGCTGGAAGCGCTGTTCATCGAG
CTGTTCCTGGACGCGCACGACAGCCCGCCTGAGGAAATCGTGCTCGATCTCGACGCCACCGATGATCCGCTGCACGGTCACCAGGAGGGTCGGTTCTTTC
ACGGCTATTACAACTGCTATTGCTATCTGCCGCTGTACATCTTCTGCGGCCGCCACCTGCTTTCGGCCAAGCTACGGCGTTCGAACATCGACGCCAGCGC
AGGCTCGGTCGCCGAAATCGATCGTATCATCGGGCAGATCCGCCAAAGCTGGCCAAACGTGCGCATCATCCTGCGCGCCGATTCCGGCTTCGCCCGCGAC
GAACTGATGGACTGGTGCGAGACCAACAAGGTCGACTATGTCTTTGGCCTTGCTCGCAACCCGCGGCTGGAAAGGCAAATCGCGCCGGCCATGGAGGAAG
CAAGCCTGTTATCCCAGGCAAGCGCCCAGGCGACCCGCGTCTTCCGCGACTTCCTGTGGTCGACCAAGGACAGCTGGACACGACGACGGCGGGTCGTTGG
AAAAGCGGAATGGACGCTGCTGGGCGCCAATCCGCGCTTCATCGTCACCTCCCTTAAGTCAGAGCGCTGGGCGGCACAGACGCTTTACGAGGATCTCTAC
TGCGCCCGCGGTGACATGGAGAACCGCATCAAAGAATGCCAGCTCGATCTCTACGCCGACCGCACCAGCGCCCACACCATGCACGCCAATCAACTGCGCC
TCTGGTTCGCCTCGTTGGCCTACGTGCTGATCTGCGCCCTGCGCCGCCTTGGCCTTGCCCATACGCGGCTCGCCGAGGCGACCTGCGGCACCATCCGGCT
GAAGCTGTTAAAGATCGGCGCCCAGGTCCGCGTCTCGGTGCGTCGCATCAAAATCGCGATGGCATCCGCCTGTCCCTATGCCGACGAATTTGCACTGGCA
CACGCCCGAATACGTGCCGCGGCCCGCTGATGCCGCCGGCCTGAAACCCTTCCGCAACCAGAACAGGAGACATCGCCGAACCCAGACCCGCCGCTCACAG
TGGCGCCGACTCCGTTCGTCTTCGAAGCCGGAGCGCCAAACAGGCGTCCCGGCGGGCCGAGTTGCGCCACCGGCGCTAAAGGCGGTGAGAGAAGCGGGTT
AGGGCAGCACCAGACATCGCCGCGGCCATCAGAGAGCGGCTGCAACGGGTCGAGCGTTGGTCTTCAGCGGGGCGTCCGTGAGAGCCTCCTGTCGCTTCTG
CTCATTCTCACATTCATCCGGAGCGCGGGTTTCGCCTCGGCTACGGCCGCAGTTTGCCTGCCAGAAACGAGACGAAGCGTCGGACCTTTACCGCAATATG
GCGATTGGCCGGATAGACCGCTTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa2481630+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQTHCIAEQLEFEGFDGHKVVAGFDGGAITSDAGALLLRHVDGVIGLFDRVAACFVDDRDPTCTVHSVRTLVGQRVAAIALGYEDVDDHDRLRHDPVLAL
LSERLTPKRQDCAVLAGKSTLNRLEHGRLGQPTRYHKIAYDRQALEALFIELFLDAHDSPPEEIVLDLDATDDPLHGHQEGRFFHGYYNCYCYLPLYIFC
GRHLLSAKLRRSNIDASAGSVAEIDRIIGQIRQSWPNVRIILRADSGFARDELMDWCETNKVDYVFGLARNPRLERQIAPAMEEASLLSQASAQATRVFR
DFLWSTKDSWTRRRRVVGKAEWTLLGANPRFIVTSLKSERWAAQTLYEDLYCARGDMENRIKECQLDLYADRTSAHTMHANQLRLWFASLAYVLICALRR
LGLAHTRLAEATCGTIRLKLLKIGAQVRVSVRRIKIAMASACPYADEFALAHARIRAAAR

 

Blast result :
Comments
ISRsp7 is 68% aa similar to IS1380.
References
1] ISfinder annotation (2009)
2] Broughton,W.J., Perret,X., Staehelin,C., Schmitz,R.A., Raasch,C., Liesegang,H., Gottschalk,G. and Streit,W.R. (2003) Direct submission GenBank.