ISVsp19
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ01000001 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1802 bp
Ends
IR Length : 17/18
IRL : CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTA
IRR : CCCGCATTTCTCATACCCCCTGACTTGACAACCCAAGATCAGCGGGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCTCGGAC | TTAG | CGTGAAGACC | 4 |
TATCTGTCCC | CTAG | TTGCAGCCGC | 4 |
TTCATCATTC | CTAG | TTTCCGAAGC | 4 |
CCGCCGCTCC | TTAG | GGGGCTGAAA | 4 |
CATCGTCTAG | CTAAAGGAAG | 0 |
DNA sequence
CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTAGTCTTTGATTACCAAGGCAAAAACCAAGGCATGCACCAGACTCAAGCAGC
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGCGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGCGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1497 bp | 498 aa | 81 | 1577 | + | No |
Chemistry : DDE
ORF sequence :
MHQTQAATQCTQAKLEFQALGGRRVEADFSGGYLSSEGGSLLLRQIDQKLGLCEKLAGCFTDRRDQRFVEHDLAGMLRQRIFGLALGYEDLNDHDCLRRD
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP
Blast result :
Comments
ISVsp19 is 58% aa similar to IS1380.
References
1] ISfinder annotation
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank