ISVsp19

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ01000001 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1802 bp

Ends


IR Length : 17/18

IRL : CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTA
IRR : CCCGCATTTCTCATACCCCCTGACTTGACAACCCAAGATCAGCGGGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCTCGGACTTAGCGTGAAGACC4
TATCTGTCCCCTAGTTGCAGCCGC4
TTCATCATTCCTAGTTTCCGAAGC4
CCGCCGCTCCTTAGGGGGCTGAAA4
CATCGTCTAGCTAAAGGAAG0

DNA sequence

CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTAGTCTTTGATTACCAAGGCAAAAACCAAGGCATGCACCAGACTCAAGCAGC
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGCGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1497 bp498 aa811577+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHQTQAATQCTQAKLEFQALGGRRVEADFSGGYLSSEGGSLLLRQIDQKLGLCEKLAGCFTDRRDQRFVEHDLAGMLRQRIFGLALGYEDLNDHDCLRRD
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP

 

Blast result :
Comments
ISVsp19 is 58% aa similar to IS1380.
References
1] ISfinder annotation
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank